PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000291860	[[55235983, 55236035], [55236712, 55236748], [55237518, 55237803], [55239076, 55239376], [55240958, 55241252], [55246719, 55246824], [55247286, 55247339], [55247437, 55248003]]	[[55236001, 55236035], [55236712, 55236748], [55237518, 55237803], [55239076, 55239376], [55240958, 55241252], [55246719, 55246824], [55247286, 55247339], [55247437, 55247563]]
NM_153443	[[55235951, 55236035], [55236712, 55236748], [55237518, 55237803], [55239076, 55239376], [55240958, 55241252], [55246719, 55246824], [55247286, 55247339], [55247437, 55248003]]	[[55236001, 55236035], [55236712, 55236748], [55237518, 55237803], [55239076, 55239376], [55240958, 55241252], [55246719, 55246824], [55247286, 55247339], [55247437, 55247563]]

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I054695	54695801	54698000	0.75	[{'connected_gene': 'LILRP1', 'score': 550.77}, {'connected_gene': 'KIR3DL3', 'score': 12.26}, {'connected_gene': 'KIR2DL3', 'score': 12.23}, {'connected_gene': 'KIR2DL4', 'score': 12.09}, {'connected_gene': 'KIR3DL1', 'score': 12.08}, {'connected_gene': 'KIR3DX1', 'score': 10.84}, {'connected_gene': 'GP6', 'score': 10.04}, {'connected_gene': 'ENSG00000228790', 'score': 0.44}]
chr19	GH19I054368	54368401	54377270	2.06	[{'connected_gene': 'LAIR1', 'score': 572.15}, {'connected_gene': 'FCAR', 'score': 25.76}, {'connected_gene': 'LILRB2', 'score': 12.26}, {'connected_gene': 'OSCAR', 'score': 10.48}, {'connected_gene': 'LILRA5', 'score': 10.28}, {'connected_gene': 'VSTM1', 'score': 9.64}, {'connected_gene': 'LILRB3', 'score': 7.49}, {'connected_gene': 'LILRB4', 'score': 6.18}, {'connected_gene': 'LILRB1', 'score': 5.94}, {'connected_gene': 'LILRA2', 'score': 4.88}, {'connected_gene': 'LILRA1', 'score': 4.45}, {'connected_gene': 'LENG8', 'score': 2.58}, {'connected_gene': 'LAIR2', 'score': 2.57}, {'connected_gene': 'KIR3DL3', 'score': 1.51}, {'connected_gene': 'LILRA6', 'score': 1.35}, {'connected_gene': 'TARM1', 'score': 1.15}, {'connected_gene': 'ENSG00000237955', 'score': 0.44}]
chr19	GH19I054792	54792401	54793400	0.38	[{'connected_gene': 'KIR2DL3', 'score': 11.57}, {'connected_gene': 'KIR3DL1', 'score': 11.33}, {'connected_gene': 'KIR3DL3', 'score': 11.2}, {'connected_gene': 'NLRP2', 'score': 10.98}, {'connected_gene': 'NLRP7', 'score': 10.98}, {'connected_gene': 'ENSG00000243494', 'score': 10.97}, {'connected_gene': 'KIR3DX1', 'score': 10.09}, {'connected_gene': 'EPS8L1', 'score': 9.88}, {'connected_gene': 'RDH13', 'score': 9.88}, {'connected_gene': 'KIR3DP1', 'score': 0.44}, {'connected_gene': 'KIR2DL4', 'score': 0.39}, {'connected_gene': 'ENSG00000215765', 'score': 0.2}]
chr19	GH19I054859	54859466	54859837	0.76	[{'connected_gene': 'FCAR', 'score': 11.02}, {'connected_gene': 'TNNT1', 'score': 10.61}, {'connected_gene': 'TMEM86B', 'score': 9.96}, {'connected_gene': 'LAIR1', 'score': 6.16}, {'connected_gene': 'LILRB1', 'score': 6.16}, {'connected_gene': 'LILRA1', 'score': 5.88}, {'connected_gene': 'LILRA2', 'score': 5.78}, {'connected_gene': 'TMEM150B', 'score': 5.23}, {'connected_gene': 'LILRB4', 'score': 4.22}, {'connected_gene': 'PPP1R12C', 'score': 2.78}, {'connected_gene': 'KIR3DL3', 'score': 2.41}, {'connected_gene': 'KIR2DS4', 'score': 1.66}, {'connected_gene': 'LENG8', 'score': 1.55}, {'connected_gene': 'LAIR2', 'score': 1.21}, {'connected_gene': 'GC19M054869', 'score': 0.44}, {'connected_gene': 'RNU6-222P', 'score': 0.44}, {'connected_gene': 'KIR3DL2', 'score': 0.44}]
chr19	GH19I054612	54612401	54613000	0.69	[{'connected_gene': 'FCAR', 'score': 12.17}, {'connected_gene': 'LAIR1', 'score': 11.3}, {'connected_gene': 'LILRB1', 'score': 5.28}, {'connected_gene': 'LILRB2', 'score': 3.69}, {'connected_gene': 'LILRB3', 'score': 3.49}, {'connected_gene': 'LILRB4', 'score': 3.37}, {'connected_gene': 'LILRA5', 'score': 2.98}, {'connected_gene': 'LILRA2', 'score': 2.42}, {'connected_gene': 'LILRA1', 'score': 2.24}, {'connected_gene': 'LAIR2', 'score': 2.06}, {'connected_gene': 'KIR3DL3', 'score': 1.6}, {'connected_gene': 'ENSG00000238094', 'score': 0.77}]
chr19	GH19I054660	54660193	54664400	1.65	[{'connected_gene': 'LILRB4', 'score': 564.55}, {'connected_gene': 'FCAR', 'score': 14.54}, {'connected_gene': 'LAIR1', 'score': 13.61}, {'connected_gene': 'LILRB1', 'score': 13.55}, {'connected_gene': 'KIR3DX1', 'score': 11.3}, {'connected_gene': 'LILRB2', 'score': 10.51}, {'connected_gene': 'KIR2DL3', 'score': 10.44}, {'connected_gene': 'LILRA5', 'score': 9.83}, {'connected_gene': 'LILRB3', 'score': 7.75}, {'connected_gene': 'LILRA1', 'score': 6.52}, {'connected_gene': 'LILRA2', 'score': 6.26}, {'connected_gene': 'PPP1R12C', 'score': 2.75}, {'connected_gene': 'LENG8', 'score': 2.31}, {'connected_gene': 'LAIR2', 'score': 1.98}, {'connected_gene': 'LILRA6', 'score': 1.84}, {'connected_gene': 'KIR3DL3', 'score': 1.46}, {'connected_gene': 'ENSG00000225370', 'score': 0.44}, {'connected_gene': 'ENSG00000237323', 'score': 0.39}]
chr19	GH19I054318	54318601	54319600	1.1	[{'connected_gene': 'LILRB2', 'score': 18.86}, {'connected_gene': 'LILRB3', 'score': 16.56}, {'connected_gene': 'LAIR1', 'score': 16.41}, {'connected_gene': 'LILRA6', 'score': 13.4}, {'connected_gene': 'TTYH1', 'score': 12.11}, {'connected_gene': 'ENSG00000227407', 'score': 12.09}, {'connected_gene': 'LILRB5', 'score': 11.95}, {'connected_gene': 'ENSG00000249189', 'score': 11.93}, {'connected_gene': 'CNOT3', 'score': 11.2}, {'connected_gene': 'ENSG00000237017', 'score': 11.2}, {'connected_gene': 'PRPF31', 'score': 11.19}, {'connected_gene': 'TMC4', 'score': 11.18}, {'connected_gene': 'MYADM', 'score': 9.28}, {'connected_gene': 'OSCAR', 'score': 8.8}, {'connected_gene': 'LILRA5', 'score': 6.2}, {'connected_gene': 'VSTM1', 'score': 5.48}, {'connected_gene': 'LILRB4', 'score': 3.94}, {'connected_gene': 'LILRB1', 'score': 3.69}, {'connected_gene': 'LILRA2', 'score': 3.57}, {'connected_gene': 'LILRA1', 'score': 2.9}, {'connected_gene': 'LAIR2', 'score': 2.4}, {'connected_gene': 'LENG8', 'score': 1.71}, {'connected_gene': 'KIR3DL3', 'score': 1.16}, {'connected_gene': 'VN1R104P', 'score': 0.77}, {'connected_gene': 'ENSG00000275210', 'score': 0.37}]
chr19	GH19I054670	54670602	54671412	0.42	[{'connected_gene': 'LOC102724290', 'score': 550.77}, {'connected_gene': 'ENSG00000225370', 'score': 550.77}, {'connected_gene': 'TNNI3', 'score': 10.99}, {'connected_gene': 'DNAAF3', 'score': 10.98}, {'connected_gene': 'ENSG00000239137', 'score': 10.98}, {'connected_gene': 'KIR3DX1', 'score': 10.65}, {'connected_gene': 'LILRA5', 'score': 10.11}, {'connected_gene': 'LILRA1', 'score': 8.84}, {'connected_gene': 'LILRB1', 'score': 8.57}, {'connected_gene': 'LILRB2', 'score': 8.19}, {'connected_gene': 'LILRB3', 'score': 5.56}, {'connected_gene': 'LILRA2', 'score': 4.86}, {'connected_gene': 'LAIR1', 'score': 4.79}, {'connected_gene': 'FCAR', 'score': 4.18}, {'connected_gene': 'LILRB4', 'score': 3.66}, {'connected_gene': 'LILRA6', 'score': 2.51}, {'connected_gene': 'KIR3DL3', 'score': 2.46}, {'connected_gene': 'ENSG00000237323', 'score': 0.37}]
chr19	GH19I054269	54269063	54269283	0.45	[{'connected_gene': 'LOC100420187', 'score': 550.77}, {'connected_gene': 'LAIR1', 'score': 9.96}, {'connected_gene': 'LILRB2', 'score': 9.19}, {'connected_gene': 'LILRA5', 'score': 6.33}, {'connected_gene': 'OSCAR', 'score': 6.16}, {'connected_gene': 'MYADM', 'score': 4.83}, {'connected_gene': 'LILRB3', 'score': 4.73}, {'connected_gene': 'VSTM1', 'score': 4.43}, {'connected_gene': 'LILRB4', 'score': 2.94}, {'connected_gene': 'NLRP12', 'score': 2.92}, {'connected_gene': 'LILRA1', 'score': 2.89}, {'connected_gene': 'LILRB1', 'score': 2.87}, {'connected_gene': 'LILRA2', 'score': 2.42}, {'connected_gene': 'TARM1', 'score': 1.69}, {'connected_gene': 'KIR3DL3', 'score': 1.62}, {'connected_gene': 'LAIR2', 'score': 1.31}, {'connected_gene': 'LENG8', 'score': 1.2}]
chr19	GH19I054724	54724397	54724456	0.61	[{'connected_gene': 'ENSG00000215765', 'score': 550.77}, {'connected_gene': 'KIR3DL3', 'score': 550.77}, {'connected_gene': 'LILRP2', 'score': 0.37}]