PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000282026	[[50202434, 50202751], [50204565, 50208008]]	[[50204583, 50205174]]
ENST00000490932	[[50202658, 50202751], [50204169, 50204235], [50206315, 50206373]]	None
NM_138450	[[50202434, 50202751], [50204565, 50208008]]	[[50204583, 50205174]]

Promoter

Chrom	Start	End	Description
chr13	50202625	50202669	CAGE_peak_1_at_ARL11_5end
chr13	50202674	50202687	CAGE_peak_2_at_ARL11_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I049649	49649308	49653468	0.83	[{'connected_gene': 'EBPL', 'score': 28.28}, {'connected_gene': 'ARL11', 'score': 13.05}, {'connected_gene': 'KPNA3', 'score': 10.96}, {'connected_gene': 'PHF11', 'score': 10.55}, {'connected_gene': 'RCBTB1', 'score': 5.97}, {'connected_gene': 'GC13M049652', 'score': 0.77}, {'connected_gene': 'LOC105370205', 'score': 0.39}]
chr13	GH13I049442	49442897	49448355	2.47	[{'connected_gene': 'SETDB2', 'score': 562.96}, {'connected_gene': 'CAB39L', 'score': 561.63}, {'connected_gene': 'PHF11', 'score': 23.78}, {'connected_gene': 'ARL11', 'score': 10.83}, {'connected_gene': 'EBPL', 'score': 6.37}, {'connected_gene': 'SNRPGP14', 'score': 0.26}, {'connected_gene': 'GC13P049390', 'score': 0.22}]
chr13	GH13I049435	49435788	49437085	0.49	[{'connected_gene': 'SETDB2', 'score': 14.17}, {'connected_gene': 'ARL11', 'score': 4.51}, {'connected_gene': 'CAB39L', 'score': 0.44}, {'connected_gene': 'GC13P049413', 'score': 0.34}, {'connected_gene': 'GC13P049390', 'score': 0.25}]
chr13	GH13I049634	49634991	49636670	0.91	[{'connected_gene': 'RCBTB1', 'score': 13.42}, {'connected_gene': 'EBPL', 'score': 4.56}, {'connected_gene': 'CAB39L', 'score': 4.2}, {'connected_gene': 'ARL11', 'score': 1.64}, {'connected_gene': 'SETDB2', 'score': 1.23}, {'connected_gene': 'LOC105370205', 'score': 0.77}]
chr13	GH13I049624	49624858	49626854	1	[{'connected_gene': 'RCBTB1', 'score': 12.33}, {'connected_gene': 'PHF11', 'score': 8.56}, {'connected_gene': 'ARL11', 'score': 0.77}, {'connected_gene': 'LOC105370204', 'score': 0.44}]
chr13	GH13I049606	49606801	49607814	0.96	[{'connected_gene': 'RCBTB1', 'score': 24.41}, {'connected_gene': 'ARL11', 'score': 13.34}, {'connected_gene': 'PHF11', 'score': 11.67}, {'connected_gene': 'EBPL', 'score': 10.42}, {'connected_gene': 'GC13P049617', 'score': 0.39}]
chr13	GH13I049551	49551001	49551800	0.2	[{'connected_gene': 'RCBTB1', 'score': 14.15}, {'connected_gene': 'ARL11', 'score': 8.51}, {'connected_gene': 'PHF11', 'score': 0.22}, {'connected_gene': 'GC13P049390', 'score': 0.1}]
chr13	GH13I049494	49494389	49500998	2.39	[{'connected_gene': 'PHF11', 'score': 564.24}, {'connected_gene': 'SETDB2', 'score': 27.92}, {'connected_gene': 'TRIM13', 'score': 12.87}, {'connected_gene': 'KCNRG', 'score': 11.51}, {'connected_gene': 'EBPL', 'score': 10.61}, {'connected_gene': 'ARL11', 'score': 5.5}, {'connected_gene': 'RCBTB1', 'score': 0.17}, {'connected_gene': 'GC13P049390', 'score': 0.14}]
chr13	GH13I049640	49640976	49644200	1.31	[{'connected_gene': 'PHF11', 'score': 20.79}, {'connected_gene': 'RCBTB1', 'score': 13.03}, {'connected_gene': 'ARL11', 'score': 12.88}, {'connected_gene': 'EBPL', 'score': 11.77}, {'connected_gene': 'KPNA3', 'score': 10.65}, {'connected_gene': 'SETDB2', 'score': 10.26}, {'connected_gene': 'CAB39L', 'score': 4.77}, {'connected_gene': 'LOC105370205', 'score': 0.77}, {'connected_gene': 'GC13M049652', 'score': 0.39}]
chr13	GH13I049627	49627772	49630549	1.8	[{'connected_gene': 'ARL11', 'score': 563.09}, {'connected_gene': 'RCBTB1', 'score': 10.22}, {'connected_gene': 'PHF11', 'score': 7.91}, {'connected_gene': 'CAB39L', 'score': 4.47}, {'connected_gene': 'LOC105370205', 'score': 0.39}]
chr13	GH13I050121	50121689	50131823	2.28	[{'connected_gene': 'DLEU2', 'score': 555.7}, {'connected_gene': 'ENSG00000274270', 'score': 550.77}, {'connected_gene': 'SETDB2', 'score': 51.06}, {'connected_gene': 'TRIM13', 'score': 34.63}, {'connected_gene': 'KCNRG', 'score': 26.25}, {'connected_gene': 'DLEU1', 'score': 25.23}, {'connected_gene': 'RNASEH2B-AS1', 'score': 23.01}, {'connected_gene': 'CTAGE10P', 'score': 13.18}, {'connected_gene': 'RNASEH2B', 'score': 11.42}, {'connected_gene': 'EBPL', 'score': 9.37}, {'connected_gene': 'ARL11', 'score': 1.93}, {'connected_gene': 'ST13P4', 'score': 0.25}]
chr13	GH13I049653	49653585	49653772	0.31	[{'connected_gene': 'GC13M049652', 'score': 550.77}, {'connected_gene': 'GC13P049655', 'score': 550.77}, {'connected_gene': 'ARL11', 'score': 13.03}, {'connected_gene': 'EBPL', 'score': 11.76}, {'connected_gene': 'KPNA3', 'score': 10.7}, {'connected_gene': 'PHF11', 'score': 10.55}, {'connected_gene': 'LOC105370205', 'score': 0.39}]
chr13	GH13I049619	49619011	49620718	0.74	[{'connected_gene': 'GC13P049618', 'score': 550.77}, {'connected_gene': 'ENSG00000176882', 'score': 550.77}, {'connected_gene': 'LOC105370204', 'score': 550.77}, {'connected_gene': 'RCBTB1', 'score': 25.16}, {'connected_gene': 'ARL11', 'score': 15.53}, {'connected_gene': 'EBPL', 'score': 10.74}, {'connected_gene': 'KPNA3', 'score': 10.18}]