PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000314355	[[91926112, 91926266], [91930084, 91930212], [91931287, 91931618]]	[[91926207, 91926266], [91930084, 91930212], [91931287, 91931340]]
NM_001827	[[91926109, 91926266], [91930084, 91930212], [91931287, 91931618]]	[[91926207, 91926266], [91930084, 91930212], [91931287, 91931340]]

Promoter

Chrom	Start	End	Description
chr9	91926103	91926119	CAGE_peak_1_at_CKS2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I089380	89380884	89384760	0.38	[{'connected_gene': 'SECISBP2', 'score': 11.79}, {'connected_gene': 'CKS2', 'score': 5.02}, {'connected_gene': 'PIR43063', 'score': 0.31}, {'connected_gene': 'PA2G4P6', 'score': 0.2}, {'connected_gene': 'SEMA4D', 'score': 0.13}]
chr9	GH09I089361	89361520	89364844	0.38	[{'connected_gene': 'SECISBP2', 'score': 6.64}, {'connected_gene': 'SEMA4D', 'score': 6.47}, {'connected_gene': 'CKS2', 'score': 5.28}, {'connected_gene': 'PIR43063', 'score': 0.44}, {'connected_gene': 'PA2G4P6', 'score': 0.17}]
chr9	GH09I089316	89316724	89320738	2.09	[{'connected_gene': 'SECISBP2', 'score': 582.59}, {'connected_gene': 'SEMA4D', 'score': 7.92}, {'connected_gene': 'CKS2', 'score': 5.48}, {'connected_gene': 'PIR43063', 'score': 0.28}]
chr9	GH09I089136	89136157	89140528	1.19	[{'connected_gene': 'SHC3', 'score': 27.17}, {'connected_gene': 'ENSG00000224945', 'score': 11.26}, {'connected_gene': 'CKS2', 'score': 5.44}]
chr9	GH09I089152	89152952	89156112	1.06	[{'connected_gene': 'SHC3', 'score': 22.91}, {'connected_gene': 'ENSG00000224945', 'score': 11.6}, {'connected_gene': 'CKS2', 'score': 6.51}]
chr9	GH09I089340	89340187	89341742	0.59	[{'connected_gene': 'CKS2', 'score': 4.36}, {'connected_gene': 'PIR43063', 'score': 0.39}, {'connected_gene': 'SECISBP2', 'score': 0.34}]
chr9	GH09I089350	89350938	89352155	1.09	[{'connected_gene': 'CKS2', 'score': 5.31}, {'connected_gene': 'PIR43063', 'score': 0.77}, {'connected_gene': 'SECISBP2', 'score': 0.29}]
chr9	GH09I089344	89344960	89346771	0.31	[{'connected_gene': 'CKS2', 'score': 5.34}, {'connected_gene': 'PIR43063', 'score': 0.44}, {'connected_gene': 'SECISBP2', 'score': 0.31}]
chr9	GH09I089305	89305446	89306587	0.38	[{'connected_gene': 'CKS2', 'score': 5.13}, {'connected_gene': 'GC09M089309', 'score': 0.77}, {'connected_gene': 'LOC105376136', 'score': 0.44}, {'connected_gene': 'PIR43267', 'score': 0.16}]
chr9	GH09I089367	89367599	89371310	0.64	[{'connected_gene': 'CKS2', 'score': 11.81}, {'connected_gene': 'SEMA4D', 'score': 4.74}, {'connected_gene': 'SHC3', 'score': 4.3}, {'connected_gene': 'PIR43063', 'score': 0.39}, {'connected_gene': 'PA2G4P6', 'score': 0.18}]
chr9	GH09I089309	89309131	89315483	2.06	[{'connected_gene': 'CKS2', 'score': 566.17}, {'connected_gene': 'MIR3153', 'score': 550.77}, {'connected_gene': 'LOC105376136', 'score': 550.77}, {'connected_gene': 'GC09M089309', 'score': 550.77}, {'connected_gene': 'SECISBP2', 'score': 15.01}, {'connected_gene': 'SEMA4D', 'score': 6.29}]
chr9	GH09I089395	89395465	89399600	0.2	[{'connected_gene': 'SEMA4D', 'score': 20.42}, {'connected_gene': 'SECISBP2', 'score': 15.89}, {'connected_gene': 'CKS2', 'score': 5.06}, {'connected_gene': 'PIR43063', 'score': 0.26}, {'connected_gene': 'PA2G4P6', 'score': 0.23}]
chr9	GH09I089414	89413718	89416963	0.43	[{'connected_gene': 'SEMA4D', 'score': 22.48}, {'connected_gene': 'CKS2', 'score': 6.84}, {'connected_gene': 'SECISBP2', 'score': 4.32}, {'connected_gene': 'PA2G4P6', 'score': 0.29}, {'connected_gene': 'PIR43063', 'score': 0.21}]
chr9	GH09I089417	89417490	89430409	1.6	[{'connected_gene': 'SEMA4D', 'score': 24.03}, {'connected_gene': 'CKS2', 'score': 6.08}, {'connected_gene': 'SECISBP2', 'score': 4.48}, {'connected_gene': 'S1PR3', 'score': 1.5}, {'connected_gene': 'C9orf47', 'score': 1.3}, {'connected_gene': 'PA2G4P6', 'score': 0.31}, {'connected_gene': 'PIR43063', 'score': 0.2}]
chr9	GH09I089462	89462743	89470112	1.22	[{'connected_gene': 'SEMA4D', 'score': 13.36}, {'connected_gene': 'CKS2', 'score': 5.51}, {'connected_gene': 'LOC101927785', 'score': 0.77}, {'connected_gene': 'PA2G4P6', 'score': 0.37}]