Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000503225 [[35949842, 35950070], [35969444, 35969578], [35986851, 35986989], [36008524, 36008668], [36014184, 36014453], [36017007, 36017254], [36017521, 36017580], [36020765, 36020908], [36047600, 36047698], [36048331, 36048471], [36053627, 36053675], [36059591, 36059765], [36075310, 36075457]] None
ENST00000513032 [[36006986, 36008668], [36014184, 36014453], [36047600, 36047656]] None
ENST00000303965 [[36067619, 36069900], [36075310, 36075445], [36081837, 36081901], [36083872, 36083908], [36084989, 36085072], [36093502, 36093642], [36109186, 36109315], [36115791, 36115909], [36118682, 36118757], [36121271, 36121340], [36122800, 36122948], [36126483, 36126589], [36130154, 36130367], [36134847, 36135011], [36148917, 36148981], [36149169, 36149368], [36150026, 36150129], [36152521, 36152666], [36160351, 36160486], [36160952, 36161127], [36162080, 36162263], [36163086, 36163172], [36166535, 36166735], [36168553, 36168669], [36179448, 36179627], [36189072, 36189193], [36195199, 36195269], [36212011, 36212365], [36214017, 36214109], [36214864, 36214941], [36216043, 36216102], [36230203, 36231267], [36245800, 36246131]] [[36069528, 36069900], [36075310, 36075445], [36081837, 36081901], [36083872, 36083908], [36084989, 36085072], [36093502, 36093642], [36109186, 36109315], [36115791, 36115909], [36118682, 36118757], [36121271, 36121340], [36122800, 36122948], [36126483, 36126589], [36130154, 36130367], [36134847, 36135011], [36148917, 36148981], [36149169, 36149368], [36150026, 36150129], [36152521, 36152666], [36160351, 36160486], [36160952, 36161127], [36162080, 36162263], [36163086, 36163172], [36166535, 36166735], [36168553, 36168669], [36179448, 36179627], [36189072, 36189193], [36195199, 36195269], [36212011, 36212365], [36214017, 36214109], [36214864, 36214941], [36216043, 36216102], [36230203, 36231108]]
ENST00000508066 [[36161733, 36162263], [36163086, 36163172], [36166535, 36166735], [36168553, 36168669], [36179448, 36179627], [36189072, 36189193], [36195199, 36195269], [36212011, 36212365], [36214017, 36214109], [36214864, 36214941], [36216043, 36216102], [36230203, 36231267], [36245312, 36245484]] None
ENST00000505837 [[36047597, 36047698], [36048331, 36048907]] None
ENST00000512804 [[36150062, 36150129], [36152521, 36152666], [36160351, 36160486], [36160952, 36161363]] None
ENST00000503904 [[36159025, 36159172], [36160351, 36160417]] None
ENST00000511416 [[36210996, 36211036], [36212011, 36212367]] [[36210996, 36211036], [36212011, 36212123]]
ENST00000506189 [[36230967, 36231267], [36245230, 36245561]] [[36230967, 36231108]]
NM_015230 [[36067619, 36069900], [36075310, 36075445], [36081837, 36081901], [36083872, 36083908], [36084989, 36085072], [36093502, 36093642], [36109186, 36109315], [36115791, 36115909], [36118682, 36118757], [36121271, 36121340], [36122800, 36122948], [36126483, 36126589], [36130154, 36130367], [36134847, 36135011], [36148917, 36148981], [36149169, 36149368], [36150026, 36150129], [36152521, 36152666], [36160351, 36160486], [36160952, 36161127], [36162080, 36162263], [36163086, 36163172], [36166535, 36166735], [36168553, 36168669], [36179448, 36179627], [36189072, 36189193], [36195199, 36195269], [36212011, 36212365], [36214017, 36214109], [36214864, 36214941], [36216043, 36216102], [36230203, 36231267], [36245800, 36245979]] [[36069528, 36069900], [36075310, 36075445], [36081837, 36081901], [36083872, 36083908], [36084989, 36085072], [36093502, 36093642], [36109186, 36109315], [36115791, 36115909], [36118682, 36118757], [36121271, 36121340], [36122800, 36122948], [36126483, 36126589], [36130154, 36130367], [36134847, 36135011], [36148917, 36148981], [36149169, 36149368], [36150026, 36150129], [36152521, 36152666], [36160351, 36160486], [36160952, 36161127], [36162080, 36162263], [36163086, 36163172], [36166535, 36166735], [36168553, 36168669], [36179448, 36179627], [36189072, 36189193], [36195199, 36195269], [36212011, 36212365], [36214017, 36214109], [36214864, 36214941], [36216043, 36216102], [36230203, 36231108]]
Promoter
Chrom Start End Description
chr4 36163411 36163416 CAGE_peak_14_at_ARAP2_5end
chr4 36245476 36245490 CAGE_peak_9_at_ARAP2_5end
chr4 36245578 36245601 CAGE_peak_4_at_ARAP2_5end
chr4 36245611 36245622 CAGE_peak_15_at_ARAP2_5end
chr4 36245643 36245697 CAGE_peak_5_at_ARAP2_5end
chr4 36245700 36245716 CAGE_peak_13_at_ARAP2_5end
chr4 36245956 36245972 CAGE_peak_6_at_ARAP2_5end
chr4 36245985 36246005 CAGE_peak_3_at_ARAP2_5end
chr4 36246020 36246034 CAGE_peak_10_at_ARAP2_5end
chr4 36246039 36246051 CAGE_peak_11_at_ARAP2_5end
chr4 36246060 36246167 CAGE_peak_1_at_ARAP2_5end
chr4 36246229 36246251 CAGE_peak_7_at_ARAP2_5end
chr4 36246287 36246290 CAGE_peak_18_at_ARAP2_5end
chr4 36246367 36246380 CAGE_peak_12_at_ARAP2_5end
chr4 36246391 36246453 CAGE_peak_2_at_ARAP2_5end
chr4 36246458 36246477 CAGE_peak_8_at_ARAP2_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr4 GH04I036128 36128601 36128800 0.54 [{'connected_gene': 'LOC651644', 'score': 0.21}, {'connected_gene': 'LOC439933', 'score': 0.13}, {'connected_gene': 'ARAP2', 'score': 0.13}]
chr4 GH04I036054 36054079 36054208 0.54 [{'connected_gene': 'LOC651644', 'score': 0.39}, {'connected_gene': 'LOC105374397', 'score': 0.18}, {'connected_gene': 'ARAP2', 'score': 0.08}]
chr4 GH04I036231 36231291 36236676 0.66 [{'connected_gene': 'LOC439933', 'score': 15.07}, {'connected_gene': 'DTHD1', 'score': 10.66}, {'connected_gene': 'ARAP2', 'score': 5.06}, {'connected_gene': 'LOC651644', 'score': 0.1}]
chr4 GH04I036254 36254458 36257183 1.17 [{'connected_gene': 'LOC439933', 'score': 14.82}, {'connected_gene': 'DTHD1', 'score': 11.98}, {'connected_gene': 'ARAP2', 'score': 4.61}]
chr4 GH04I036262 36262361 36263406 0.2 [{'connected_gene': 'LOC439933', 'score': 8.66}, {'connected_gene': 'DTHD1', 'score': 0.37}, {'connected_gene': 'ARAP2', 'score': 0.37}]
chr4 GH04I036251 36251838 36253281 0.46 [{'connected_gene': 'LOC439933', 'score': 17.15}, {'connected_gene': 'DTHD1', 'score': 10.58}, {'connected_gene': 'ARAP2', 'score': 5.31}]
chr4 GH04I036217 36217797 36220808 0.43 [{'connected_gene': 'LOC439933', 'score': 11.58}, {'connected_gene': 'ARAP2', 'score': 11.56}, {'connected_gene': 'LOC651644', 'score': 0.1}]
chr4 GH04I036188 36188246 36190385 0.82 [{'connected_gene': 'LOC439933', 'score': 5.37}, {'connected_gene': 'ARAP2', 'score': 0.22}, {'connected_gene': 'LOC651644', 'score': 0.13}]
chr4 GH04I036185 36185981 36186991 0.2 [{'connected_gene': 'LOC439933', 'score': 11.03}, {'connected_gene': 'ARAP2', 'score': 11.03}, {'connected_gene': 'LOC651644', 'score': 0.13}]
chr4 GH04I036197 36197217 36199418 0.2 [{'connected_gene': 'LOC439933', 'score': 0.25}, {'connected_gene': 'ARAP2', 'score': 0.25}, {'connected_gene': 'LOC651644', 'score': 0.12}]
chr4 GH04I036163 36163218 36169521 0.57 [{'connected_gene': 'LOC439933', 'score': 0.18}, {'connected_gene': 'ARAP2', 'score': 0.18}, {'connected_gene': 'LOC651644', 'score': 0.15}]
chr4 GH04I036190 36190412 36191820 0.31 [{'connected_gene': 'LOC439933', 'score': 0.23}, {'connected_gene': 'ARAP2', 'score': 0.23}, {'connected_gene': 'LOC651644', 'score': 0.13}]
chr4 GH04I036171 36171576 36175343 0.56 [{'connected_gene': 'LOC439933', 'score': 0.19}, {'connected_gene': 'ARAP2', 'score': 0.19}, {'connected_gene': 'LOC651644', 'score': 0.14}]
chr4 GH04I036223 36223210 36224276 0.2 [{'connected_gene': 'LOC439933', 'score': 16.59}, {'connected_gene': 'ARAP2', 'score': 11.89}, {'connected_gene': 'LOC651644', 'score': 0.1}]
chr4 GH04I036181 36181517 36181864 0.46 [{'connected_gene': 'LOC439933', 'score': 0.21}, {'connected_gene': 'ARAP2', 'score': 0.21}, {'connected_gene': 'LOC651644', 'score': 0.13}]
chr4 GH04I036177 36177314 36179144 0.74 [{'connected_gene': 'LOC439933', 'score': 0.2}, {'connected_gene': 'ARAP2', 'score': 0.2}, {'connected_gene': 'LOC651644', 'score': 0.14}]
chr4 GH04I036212 36212838 36215745 0.31 [{'connected_gene': 'LOC439933', 'score': 11.79}, {'connected_gene': 'ARAP2', 'score': 11.77}, {'connected_gene': 'LOC651644', 'score': 0.11}]
chr4 GH04I036195 36195574 36196539 0.2 [{'connected_gene': 'LOC439933', 'score': 0.25}, {'connected_gene': 'ARAP2', 'score': 0.25}, {'connected_gene': 'LOC651644', 'score': 0.12}]
chr4 GH04I036182 36182474 36184255 0.67 [{'connected_gene': 'LOC439933', 'score': 0.21}, {'connected_gene': 'ARAP2', 'score': 0.21}, {'connected_gene': 'LOC651644', 'score': 0.13}]
chr4 GH04I036240 36240456 36245871 1.59 [{'connected_gene': 'LOC439933', 'score': 575.57}, {'connected_gene': 'ARAP2', 'score': 556.23}, {'connected_gene': 'LOC651644', 'score': 0.1}]
chr4 GH04I036208 36208433 36209691 0.51 [{'connected_gene': 'LOC439933', 'score': 11.75}, {'connected_gene': 'ARAP2', 'score': 11.75}, {'connected_gene': 'LOC651644', 'score': 0.11}]
chr4 GH04I036205 36205769 36207056 0.2 [{'connected_gene': 'LOC439933', 'score': 10.46}, {'connected_gene': 'ARAP2', 'score': 10.46}, {'connected_gene': 'LOC651644', 'score': 0.11}]
chr4 GH04I036238 36238099 36238228 0.4 [{'connected_gene': 'LOC439933', 'score': 0.44}, {'connected_gene': 'ARAP2', 'score': 0.44}, {'connected_gene': 'LOC651644', 'score': 0.09}]
chr4 GH04I036200 36200698 36204444 0.31 [{'connected_gene': 'LOC439933', 'score': 10.32}, {'connected_gene': 'ARAP2', 'score': 10.32}, {'connected_gene': 'LOC651644', 'score': 0.12}]
chr4 GH04I036292 36292601 36292800 0.4 [{'connected_gene': 'LOC439933', 'score': 10.86}, {'connected_gene': 'ARAP2', 'score': 10.86}, {'connected_gene': 'DTHD1', 'score': 0.39}, {'connected_gene': 'LOC105374399', 'score': 0.21}]
chr4 GH04I036288 36288064 36290296 0.46 [{'connected_gene': 'LOC439933', 'score': 19.32}, {'connected_gene': 'ARAP2', 'score': 10.87}, {'connected_gene': 'DTHD1', 'score': 0.44}, {'connected_gene': 'LOC105374399', 'score': 0.2}]
chr4 GH04I036270 36270589 36271062 0.2 [{'connected_gene': 'LOC439933', 'score': 11.1}, {'connected_gene': 'ARAP2', 'score': 11.1}, {'connected_gene': 'DTHD1', 'score': 0.39}]
chr4 GH04I036273 36273278 36274584 0.54 [{'connected_gene': 'LOC439933', 'score': 17.08}, {'connected_gene': 'ARAP2', 'score': 11.69}, {'connected_gene': 'DTHD1', 'score': 0.44}]
chr4 GH04I036277 36277124 36278272 0.31 [{'connected_gene': 'LOC439933', 'score': 11.67}, {'connected_gene': 'ARAP2', 'score': 11.67}, {'connected_gene': 'ENSG00000251438', 'score': 10.3}, {'connected_gene': 'DTHD1', 'score': 0.77}]
chr4 GH04I036278 36278529 36279567 0.58 [{'connected_gene': 'LOC439933', 'score': 17.2}, {'connected_gene': 'ARAP2', 'score': 10.75}, {'connected_gene': 'DTHD1', 'score': 0.77}]
chr4 GH04I036399 36399879 36400028 0.57 [{'connected_gene': 'LOC439933', 'score': 10.62}, {'connected_gene': 'ARAP2', 'score': 10.62}, {'connected_gene': 'ENSG00000251438', 'score': 0.44}, {'connected_gene': 'MIR1255B1', 'score': 0.31}]
chr4 GH04I036224 36224628 36231282 0.54 [{'connected_gene': 'DTHD1', 'score': 10.65}, {'connected_gene': 'LOC439933', 'score': 5.27}, {'connected_gene': 'ARAP2', 'score': 0.37}, {'connected_gene': 'LOC651644', 'score': 0.1}]
chr4 GH04I036280 36280610 36287366 1.93 [{'connected_gene': 'DTHD1', 'score': 585.68}, {'connected_gene': 'LOC439933', 'score': 19.72}, {'connected_gene': 'ARAP2', 'score': 17.43}, {'connected_gene': 'LOC105374399', 'score': 0.19}]
chr4 GH04I036260 36260523 36261502 0.2 [{'connected_gene': 'DTHD1', 'score': 12.01}, {'connected_gene': 'LOC439933', 'score': 5.53}, {'connected_gene': 'ARAP2', 'score': 0.37}]
chr4 GH04I036267 36267537 36270166 1.06 [{'connected_gene': 'DTHD1', 'score': 42.03}, {'connected_gene': 'LOC439933', 'score': 18.02}, {'connected_gene': 'ARAP2', 'score': 17.88}]
chr4 GH04I036076 36076378 36076567 0.26 [{'connected_gene': 'DTHD1', 'score': 1.87}, {'connected_gene': 'ARAP2', 'score': 1.54}, {'connected_gene': 'LOC651644', 'score': 0.39}, {'connected_gene': 'LOC439933', 'score': 0.1}]
chr4 GH04I036319 36319359 36321450 1.13 [{'connected_gene': 'DTHD1', 'score': 7.54}, {'connected_gene': 'ARAP2', 'score': 4.73}, {'connected_gene': 'LOC105374399', 'score': 0.28}, {'connected_gene': 'ENSG00000251438', 'score': 0.19}]
chr4 GH04I036129 36129409 36129782 0.24 [{'connected_gene': 'ARAP2', 'score': 1.57}, {'connected_gene': 'LOC651644', 'score': 0.21}, {'connected_gene': 'LOC439933', 'score': 0.14}]
chr4 GH04I036303 36303527 36303666 0.39 [{'connected_gene': 'ARAP2', 'score': 16.05}, {'connected_gene': 'LOC439933', 'score': 11.87}, {'connected_gene': 'DTHD1', 'score': 11.77}, {'connected_gene': 'LOC105374399', 'score': 0.23}]
chr4 GH04I036310 36310331 36311600 0.74 [{'connected_gene': 'ARAP2', 'score': 26.18}, {'connected_gene': 'LOC439933', 'score': 11.61}, {'connected_gene': 'DTHD1', 'score': 11.47}, {'connected_gene': 'LOC105374399', 'score': 0.26}, {'connected_gene': 'ENSG00000251438', 'score': 0.18}]
chr4 GH04I036313 36313367 36313669 0.29 [{'connected_gene': 'ARAP2', 'score': 13.03}, {'connected_gene': 'LOC439933', 'score': 11.11}, {'connected_gene': 'DTHD1', 'score': 0.29}, {'connected_gene': 'LOC105374399', 'score': 0.26}, {'connected_gene': 'ENSG00000251438', 'score': 0.18}]
chr4 GH04I036348 36348328 36349368 0.96 [{'connected_gene': 'ARAP2', 'score': 19.41}, {'connected_gene': 'ENSG00000251438', 'score': 12.4}, {'connected_gene': 'LOC439933', 'score': 11.87}, {'connected_gene': 'LOC105374399', 'score': 0.44}, {'connected_gene': 'DTHD1', 'score': 0.2}]
chr4 GH04I036325 36325139 36326935 1.16 [{'connected_gene': 'ARAP2', 'score': 17.48}, {'connected_gene': 'DTHD1', 'score': 15.92}, {'connected_gene': 'LOC439933', 'score': 11.69}, {'connected_gene': 'LOC105374399', 'score': 0.31}, {'connected_gene': 'ENSG00000251438', 'score': 0.2}]
chr4 GH04I036304 36303854 36304128 0.62 [{'connected_gene': 'ARAP2', 'score': 14.58}, {'connected_gene': 'DTHD1', 'score': 11.77}, {'connected_gene': 'LOC439933', 'score': 11.16}, {'connected_gene': 'LOC105374399', 'score': 0.23}]
chr4 GH04I036322 36322386 36324440 1.21 [{'connected_gene': 'ARAP2', 'score': 6.67}, {'connected_gene': 'DTHD1', 'score': 5.81}, {'connected_gene': 'LOC105374399', 'score': 0.29}, {'connected_gene': 'ENSG00000251438', 'score': 0.2}]
chr4 GH04I036385 36385519 36387032 1.13 [{'connected_gene': 'ARAP2', 'score': 2.98}, {'connected_gene': 'DTHD1', 'score': 1.74}, {'connected_gene': 'ENSG00000251438', 'score': 0.44}, {'connected_gene': 'LOC105374399', 'score': 0.29}]
chr4 GH04I036351 36351219 36351348 0.62 [{'connected_gene': 'ENSG00000251438', 'score': 12.4}, {'connected_gene': 'LOC439933', 'score': 11.87}, {'connected_gene': 'ARAP2', 'score': 11.87}, {'connected_gene': 'LOC105374399', 'score': 0.77}, {'connected_gene': 'DTHD1', 'score': 0.2}]

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