PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr10	95462156	95462167	CAGE_peak_2_at_FRA10AC1_5end
chr10	95462265	95462378	CAGE_peak_1_at_FRA10AC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I093753	93753695	93754101	0.66	[{'connected_gene': 'LGI1', 'score': 4.05}, {'connected_gene': 'FRA10AC1', 'score': 1.36}, {'connected_gene': 'LOC101927013', 'score': 0.77}, {'connected_gene': 'GC10P093720', 'score': 0.29}]
chr10	GH10I094361	94361242	94363573	2.08	[{'connected_gene': 'NOC3L', 'score': 578.21}, {'connected_gene': 'PIR55864', 'score': 550.77}, {'connected_gene': 'ENSG00000273450', 'score': 30.67}, {'connected_gene': 'FRA10AC1', 'score': 14.79}, {'connected_gene': 'PDE6C', 'score': 13.89}, {'connected_gene': 'PIPSL', 'score': 11.87}, {'connected_gene': 'PLCE1-AS1', 'score': 9.92}, {'connected_gene': 'PLCE1', 'score': 5.42}]
chr10	GH10I092838	92838081	92840563	1.29	[{'connected_gene': 'PDE6C', 'score': 20.6}, {'connected_gene': 'FRA10AC1', 'score': 14.79}, {'connected_gene': 'RPL17P34', 'score': 10.37}, {'connected_gene': 'BTAF1', 'score': 9.89}, {'connected_gene': 'MARK2P9', 'score': 4.15}, {'connected_gene': 'EXOC6', 'score': 0.77}, {'connected_gene': 'ENSG00000225118', 'score': 0.28}]
chr10	GH10I093615	93615401	93616400	0.31	[{'connected_gene': 'PDE6C', 'score': 0.77}, {'connected_gene': 'GC10P093599', 'score': 0.37}, {'connected_gene': 'FRA10AC1', 'score': 0.17}]
chr10	GH10I093701	93701338	93703626	2.14	[{'connected_gene': 'FRA10AC1', 'score': 625.13}, {'connected_gene': 'RPL17P34', 'score': 85.97}, {'connected_gene': 'NOC3L', 'score': 82.21}, {'connected_gene': 'PDE6C', 'score': 74.44}, {'connected_gene': 'ENSG00000273450', 'score': 31.65}, {'connected_gene': 'MYOF', 'score': 12.54}, {'connected_gene': 'HELLS', 'score': 10.7}]
chr10	GH10I093541	93541958	93543193	1.01	[{'connected_gene': 'FRA10AC1', 'score': 12.17}, {'connected_gene': 'RPL17P34', 'score': 10.4}, {'connected_gene': 'HELLS', 'score': 10.21}, {'connected_gene': 'RBP4', 'score': 5.57}, {'connected_gene': 'GC10M093549', 'score': 0.44}, {'connected_gene': 'RNA5SP323', 'score': 0.29}, {'connected_gene': 'GC10M093511', 'score': 0.29}]
chr10	GH10I093752	93752844	93753093	0.62	[{'connected_gene': 'FRA10AC1', 'score': 27.28}, {'connected_gene': 'PDE6C', 'score': 10.18}, {'connected_gene': 'LOC101927013', 'score': 0.77}, {'connected_gene': 'GC10P093720', 'score': 0.29}]
chr10	GH10I093748	93748364	93750218	0.96	[{'connected_gene': 'FRA10AC1', 'score': 25.19}, {'connected_gene': 'LOC101927013', 'score': 0.44}, {'connected_gene': 'GC10P093720', 'score': 0.31}]
chr10	GH10I093745	93745544	93745693	0.49	[{'connected_gene': 'FRA10AC1', 'score': 7.98}, {'connected_gene': 'LOC101927013', 'score': 0.39}, {'connected_gene': 'GC10P093720', 'score': 0.34}]
chr10	GH10I093742	93742601	93743400	0.66	[{'connected_gene': 'FRA10AC1', 'score': 6.23}, {'connected_gene': 'LOC101927013', 'score': 0.39}, {'connected_gene': 'GC10P093720', 'score': 0.34}]
chr10	GH10I093750	93750642	93751898	0.64	[{'connected_gene': 'FRA10AC1', 'score': 25.08}, {'connected_gene': 'LOC101927013', 'score': 0.44}, {'connected_gene': 'GC10P093720', 'score': 0.29}]
chr10	GH10I093754	93752001	93752400	0.65	[{'connected_gene': 'FRA10AC1', 'score': 19.84}, {'connected_gene': 'LOC101927013', 'score': 0.44}, {'connected_gene': 'GC10P093720', 'score': 0.29}]
chr10	GH10I093746	93746524	93748094	1.04	[{'connected_gene': 'FRA10AC1', 'score': 7.79}, {'connected_gene': 'LOC101927013', 'score': 0.39}, {'connected_gene': 'GC10P093720', 'score': 0.31}]
chr10	GH10I093715	93715445	93715644	0.98	[{'connected_gene': 'FRA10AC1', 'score': 9.33}, {'connected_gene': 'GC10P093720', 'score': 0.44}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000359204	[[95427639, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863], [95462131, 95462329]]	[[95429582, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863]]
ENST00000460752	[[95429380, 95429625], [95430526, 95435061]]	None
ENST00000536233	[[95429380, 95429625], [95430526, 95430605], [95431798, 95431846], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863], [95462131, 95462325]]	[[95431841, 95431846], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863]]
ENST00000483229	[[95429435, 95429625], [95430526, 95430605], [95431582, 95431661], [95431798, 95431848]]	None
ENST00000462771	[[95430531, 95430605], [95431798, 95432788]]	None
ENST00000371430	[[95431810, 95431846], [95435378, 95435458], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863], [95462131, 95462329]]	[[95431810, 95431846], [95435378, 95435458], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863]]
ENST00000394100	[[95433513, 95433566], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863], [95462131, 95462329]]	[[95433513, 95433566], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863]]
ENST00000472153	[[95443811, 95443855], [95445002, 95445220]]	None
ENST00000482719	[[95445009, 95445116], [95447160, 95447698]]	None
NM_001347712	[[95427639, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863], [95461930, 95462329]]	[[95429582, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863]]
NM_001347713	[[95427639, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863], [95461432, 95461552], [95462131, 95462329]]	[[95429582, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863]]
NM_001347715	[[95427639, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863], [95461475, 95461552], [95462131, 95462329]]	[[95429582, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863]]
NM_145246	[[95427639, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863], [95462131, 95462329]]	[[95429582, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863]]
NR_144635	[[95427639, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863], [95462131, 95462329]]	None
NM_001347714	[[95427639, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863], [95462405, 95462716]]	[[95429582, 95429625], [95430526, 95430605], [95436409, 95436448], [95441236, 95441355], [95443812, 95443855], [95445002, 95445116], [95447160, 95447206], [95451765, 95451850], [95452402, 95452486], [95454617, 95454694], [95457892, 95457938], [95458057, 95458153], [95459786, 95459863]]