PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000259938	[[35762758, 35763054], [35763507, 35763630], [35764981, 35765088]]	[[35762922, 35763054], [35763507, 35763630], [35764981, 35765065]]
NM_001252597	[[35762758, 35763054], [35763507, 35763630], [35764585, 35764683], [35764981, 35765121]]	[[35762922, 35763054], [35763507, 35763630], [35764585, 35764627]]
NM_001832	[[35762758, 35763054], [35763507, 35763630], [35764981, 35765121]]	[[35762922, 35763054], [35763507, 35763630], [35764981, 35765065]]
NM_001252598	[[35762758, 35763054], [35764981, 35765121]]	[[35762922, 35763054], [35764981, 35765065]]

Promoter

Chrom	Start	End	Description
chr6	35765092	35765107	CAGE_peak_1_at_CLPS_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I035894	35894822	35896779	0.52	[{'connected_gene': 'SRPK1', 'score': 24.37}, {'connected_gene': 'MAPK14', 'score': 10.78}, {'connected_gene': 'SLC26A8', 'score': 10.28}, {'connected_gene': 'CLPS', 'score': 10.27}, {'connected_gene': 'GC06M038606', 'score': 0.34}]
chr6	GH06I035973	35973243	35974447	0.96	[{'connected_gene': 'SRPK1', 'score': 15.89}, {'connected_gene': 'SLC26A8', 'score': 11.51}, {'connected_gene': 'MAPK13', 'score': 10.73}, {'connected_gene': 'CLPS', 'score': 10.57}, {'connected_gene': 'ARMC12', 'score': 9.97}, {'connected_gene': 'ENSG00000232909', 'score': 9.97}, {'connected_gene': 'FKBP5', 'score': 9.97}, {'connected_gene': 'LOC105375035', 'score': 0.77}, {'connected_gene': 'DPRXP2', 'score': 0.37}]
chr6	GH06I035907	35907774	35907962	0.6	[{'connected_gene': 'SRSF3', 'score': 13.02}, {'connected_gene': 'SLC26A8', 'score': 12.1}, {'connected_gene': 'ZNF76', 'score': 11.47}, {'connected_gene': 'CLPS', 'score': 10.33}, {'connected_gene': 'SRPK1', 'score': 2.39}, {'connected_gene': 'BRPF3', 'score': 2.26}, {'connected_gene': 'MAPK14', 'score': 1.99}, {'connected_gene': 'MAPK13', 'score': 1.26}, {'connected_gene': 'GC06M038606', 'score': 0.29}]
chr6	GH06I036290	36289844	36292859	1.1	[{'connected_gene': 'C6orf222', 'score': 11.87}, {'connected_gene': 'PNPLA1', 'score': 11.4}, {'connected_gene': 'CLPS', 'score': 9.63}, {'connected_gene': 'BRPF3', 'score': 5.01}, {'connected_gene': 'MAPK13', 'score': 4.34}, {'connected_gene': 'LOC105375036', 'score': 0.26}]
chr6	GH06I035776	35776284	35776991	1.83	[{'connected_gene': 'CLPSL2', 'score': 558.92}, {'connected_gene': 'CLPS', 'score': 12.19}, {'connected_gene': 'ENSG00000232909', 'score': 10.54}, {'connected_gene': 'ARMC12', 'score': 10.52}, {'connected_gene': 'FKBP5', 'score': 10.51}, {'connected_gene': 'CLPSL1', 'score': 0.77}, {'connected_gene': 'GC06M038606', 'score': 0.15}]
chr6	GH06I035796	35796921	35796980	0.68	[{'connected_gene': 'LHFPL5', 'score': 550.77}, {'connected_gene': 'CLPS', 'score': 550.77}, {'connected_gene': 'CLPSL2', 'score': 7.76}, {'connected_gene': 'SRPK1', 'score': 5.99}, {'connected_gene': 'CLPSL1', 'score': 0.37}, {'connected_gene': 'GC06M038606', 'score': 0.18}]
chr6	GH06I035797	35797313	35797372	0.86	[{'connected_gene': 'LHFPL5', 'score': 550.77}, {'connected_gene': 'CLPS', 'score': 550.77}, {'connected_gene': 'CLPSL1', 'score': 0.37}, {'connected_gene': 'GC06M038606', 'score': 0.18}]
chr6	GH06I035849	35849801	35850400	0.2	[{'connected_gene': 'CLPS', 'score': 10.8}, {'connected_gene': 'SLC26A8', 'score': 10.02}, {'connected_gene': 'PIR31334', 'score': 0.39}, {'connected_gene': 'GC06M038606', 'score': 0.31}, {'connected_gene': 'LHFPL5', 'score': 0.23}, {'connected_gene': 'SRPK1', 'score': 0.19}]
chr6	GH06I035966	35966730	35967974	0.63	[{'connected_gene': 'LOC105375035', 'score': 550.77}, {'connected_gene': 'SRPK1', 'score': 11.41}, {'connected_gene': 'SLC26A8', 'score': 11.4}, {'connected_gene': 'MAPK13', 'score': 10.72}, {'connected_gene': 'CLPS', 'score': 10.49}, {'connected_gene': 'ARMC12', 'score': 9.97}, {'connected_gene': 'ENSG00000232909', 'score': 9.97}, {'connected_gene': 'FKBP5', 'score': 9.97}]
chr6	GH06I035629	35629020	35630338	0.43	[{'connected_gene': 'ENSG00000212579', 'score': 13.04}, {'connected_gene': 'FKBP5', 'score': 11.26}, {'connected_gene': 'ARMC12', 'score': 11.26}, {'connected_gene': 'ENSG00000232909', 'score': 11.25}, {'connected_gene': 'CLPS', 'score': 9.82}, {'connected_gene': 'TULP1', 'score': 3.99}, {'connected_gene': 'GC06P041491', 'score': 0.34}, {'connected_gene': 'RPL36P9', 'score': 0.34}]
chr6	GH06I035738	35738474	35741405	1.23	[{'connected_gene': 'ENSG00000212579', 'score': 10.8}, {'connected_gene': 'CLPS', 'score': 10.58}, {'connected_gene': 'MAPK13', 'score': 9.49}, {'connected_gene': 'TEAD3', 'score': 7.95}, {'connected_gene': 'SLC26A8', 'score': 5.84}, {'connected_gene': 'ENSG00000228559', 'score': 5.07}, {'connected_gene': 'LOC285847', 'score': 0.77}, {'connected_gene': 'ENSG00000232909', 'score': 0.77}, {'connected_gene': 'ARMC12', 'score': 0.44}, {'connected_gene': 'LOC100652794', 'score': 0.31}]
chr6	GH06I035742	35742631	35743108	0.56	[{'connected_gene': 'ENSG00000212579', 'score': 10.79}, {'connected_gene': 'CLPS', 'score': 10.59}, {'connected_gene': 'LOC102723648', 'score': 4.96}, {'connected_gene': 'LOC285847', 'score': 0.44}, {'connected_gene': 'ARMC12', 'score': 0.44}, {'connected_gene': 'ENSG00000232909', 'score': 0.44}, {'connected_gene': 'LOC100652794', 'score': 0.34}]