PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000381923	[[10323140, 10323450], [10332079, 10332227], [10335148, 10335192], [10337928, 10337967], [10339018, 10339188], [10342494, 10344384]]	[[10332173, 10332227], [10335148, 10335192], [10337928, 10337967], [10339018, 10339188], [10342494, 10342739]]
ENST00000334148	[[10323228, 10323450], [10324877, 10325017]]	None
ENST00000545924	[[10323327, 10323450], [10327880, 10328121]]	None
ENST00000298530	[[10331611, 10332227], [10337928, 10337967], [10339018, 10339188], [10342494, 10344400]]	[[10332189, 10332227], [10337928, 10337967], [10339018, 10339188], [10342494, 10342739]]
ENST00000543484	[[10331901, 10332227], [10335148, 10335192], [10337928, 10337967], [10339018, 10339151]]	[[10332173, 10332227], [10335148, 10335192], [10337928, 10337967], [10339018, 10339151]]
ENST00000536952	[[10332112, 10332227], [10335148, 10335192], [10337928, 10337967], [10339018, 10339188], [10342494, 10343582]]	[[10332173, 10332227], [10335148, 10335192], [10337928, 10337967], [10339018, 10339188], [10342494, 10342739]]
ENST00000546153	[[10338995, 10339188], [10342494, 10342862]]	None
NM_001079815	[[10323197, 10323450], [10332079, 10332227], [10335148, 10335192], [10337928, 10337967], [10339018, 10339188], [10342494, 10344403]]	[[10332173, 10332227], [10335148, 10335192], [10337928, 10337967], [10339018, 10339188], [10342494, 10342739]]
NM_153022	[[10331556, 10332227], [10337928, 10337967], [10339018, 10339188], [10342494, 10344403]]	[[10332189, 10332227], [10337928, 10337967], [10339018, 10339188], [10342494, 10342739]]

Promoter

Chrom	Start	End	Description
chr12	10331605	10331616	CAGE_peak_5_at_C12orf59_5end
chr12	10331623	10331639	CAGE_peak_1_at_C12orf59_5end
chr12	10331641	10331646	CAGE_peak_12_at_C12orf59_5end
chr12	10331652	10331666	CAGE_peak_3_at_C12orf59_5end
chr12	10339063	10339092	CAGE_peak_4_at_C12orf59_5end
chr12	10339124	10339160	CAGE_peak_2_at_C12orf59_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I010131	10131149	10131477	0.4	[{'connected_gene': 'CLEC7A', 'score': 581.17}, {'connected_gene': 'OLR1', 'score': 11.67}, {'connected_gene': 'CLEC12A', 'score': 10.72}, {'connected_gene': 'CLEC2B', 'score': 5.47}, {'connected_gene': 'GABARAPL1', 'score': 3.05}, {'connected_gene': 'CD69', 'score': 2.18}, {'connected_gene': 'LOC105369655', 'score': 0.37}, {'connected_gene': 'TMEM52B', 'score': 0.28}]
chr12	GH12I010040	10040601	10045158	0.31	[{'connected_gene': 'CLEC7A', 'score': 12.38}, {'connected_gene': 'CLEC12A-AS1', 'score': 12.36}, {'connected_gene': 'CLEC12A', 'score': 12.35}, {'connected_gene': 'TMEM52B', 'score': 10.99}, {'connected_gene': 'GABARAPL1', 'score': 10.4}, {'connected_gene': 'ENSG00000255958', 'score': 10.39}, {'connected_gene': 'CLEC1B', 'score': 9.98}, {'connected_gene': 'LINC02470', 'score': 6.86}, {'connected_gene': 'LOC100421202', 'score': 0.77}, {'connected_gene': 'ENSG00000256626', 'score': 0.77}, {'connected_gene': 'CLEC9A', 'score': 0.39}, {'connected_gene': 'RN7SKP161', 'score': 0.26}]
chr12	GH12I010027	10027201	10028400	0.63	[{'connected_gene': 'CLEC7A', 'score': 11.63}, {'connected_gene': 'CLEC12A-AS1', 'score': 10.61}, {'connected_gene': 'CLEC12A', 'score': 10.6}, {'connected_gene': 'TMEM52B', 'score': 9.89}, {'connected_gene': 'LINC02470', 'score': 6.76}, {'connected_gene': 'LOC728715', 'score': 4.42}, {'connected_gene': 'LOC102724020', 'score': 0.77}, {'connected_gene': 'GC12P010023', 'score': 0.77}]
chr12	GH12I010033	10033533	10034938	0.49	[{'connected_gene': 'CLEC7A', 'score': 12.71}, {'connected_gene': 'CLEC12B', 'score': 10.97}, {'connected_gene': 'TMEM52B', 'score': 10.34}, {'connected_gene': 'CLEC12A', 'score': 10.19}, {'connected_gene': 'CLEC12A-AS1', 'score': 10.19}, {'connected_gene': 'OLR1', 'score': 10.14}, {'connected_gene': 'GABARAPL1', 'score': 9.3}, {'connected_gene': 'ENSG00000255958', 'score': 9.3}, {'connected_gene': 'CLEC9A', 'score': 0.77}, {'connected_gene': 'LOC100421202', 'score': 0.44}]
chr12	GH12I010133	10132342	10132836	0.8	[{'connected_gene': 'CLEC7A', 'score': 0.77}, {'connected_gene': 'LOC105369655', 'score': 0.37}, {'connected_gene': 'TMEM52B', 'score': 0.28}]
chr12	GH12I010132	10132001	10132200	0.43	[{'connected_gene': 'CLEC7A', 'score': 550.77}, {'connected_gene': 'LOC105369655', 'score': 0.37}, {'connected_gene': 'TMEM52B', 'score': 0.28}]
chr12	GH12I010174	10174859	10177278	0.43	[{'connected_gene': 'OLR1', 'score': 550.77}, {'connected_gene': 'ENSG00000255958', 'score': 11.77}, {'connected_gene': 'GABARAPL1', 'score': 11.77}, {'connected_gene': 'TMEM52B', 'score': 0.44}]
chr12	GH12I010183	10183727	10187400	0.92	[{'connected_gene': 'OLR1', 'score': 36.26}, {'connected_gene': 'CLEC12A', 'score': 10.74}, {'connected_gene': 'CLEC7A', 'score': 5.43}, {'connected_gene': 'GABARAPL1', 'score': 2.02}, {'connected_gene': 'TMEM52B', 'score': 0.37}]
chr12	GH12I010168	10168915	10172413	1.34	[{'connected_gene': 'OLR1', 'score': 558.18}, {'connected_gene': 'TMEM52B', 'score': 550.77}, {'connected_gene': 'ENSG00000255958', 'score': 10.65}, {'connected_gene': 'GABARAPL1', 'score': 10.65}, {'connected_gene': 'CLEC7A', 'score': 10.04}]
chr12	GH12I010190	10190800	10192637	0.92	[{'connected_gene': 'OLR1', 'score': 23.45}, {'connected_gene': 'TMEM52B', 'score': 0.34}, {'connected_gene': 'GABARAPL1', 'score': 0.34}]
chr12	GH12I010182	10182050	10183400	0.79	[{'connected_gene': 'OLR1', 'score': 23.52}, {'connected_gene': 'TMEM52B', 'score': 7.88}, {'connected_gene': 'GABARAPL1', 'score': 0.31}]
chr12	GH12I010030	10030231	10032906	1.47	[{'connected_gene': 'CLEC9A', 'score': 550.77}, {'connected_gene': 'LOC102724020', 'score': 550.77}, {'connected_gene': 'CLEC7A', 'score': 12.71}, {'connected_gene': 'CLEC12B', 'score': 10.99}, {'connected_gene': 'TMEM52B', 'score': 10.21}, {'connected_gene': 'OLR1', 'score': 10.14}, {'connected_gene': 'CLEC1A', 'score': 6.81}, {'connected_gene': 'STYK1', 'score': 6.44}, {'connected_gene': 'LOC100421202', 'score': 0.44}]
chr12	GH12I010166	10166601	10168321	0.84	[{'connected_gene': 'GABARAPL1', 'score': 10.85}, {'connected_gene': 'ENSG00000255958', 'score': 10.83}, {'connected_gene': 'CLEC7A', 'score': 10.78}, {'connected_gene': 'OLR1', 'score': 10.17}, {'connected_gene': 'TMEM52B', 'score': 0.77}]
chr12	GH12I010562	10562442	10562591	0.57	[{'connected_gene': 'KLRK1', 'score': 11.15}, {'connected_gene': 'STYK1', 'score': 11.08}, {'connected_gene': 'KLRC1', 'score': 10.68}, {'connected_gene': 'TMEM52B', 'score': 9.84}, {'connected_gene': 'LINC02446', 'score': 0.44}, {'connected_gene': 'LOC105376675', 'score': 0.44}]
chr12	GH12I010178	10178850	10180569	1.09	[{'connected_gene': 'TMEM52B', 'score': 550.44}, {'connected_gene': 'OLR1', 'score': 0.77}, {'connected_gene': 'GABARAPL1', 'score': 0.29}]
chr12	GH12I010189	10189642	10190228	0.2	[{'connected_gene': 'TMEM52B', 'score': 7.85}, {'connected_gene': 'DDX12P', 'score': 4.38}, {'connected_gene': 'OLR1', 'score': 0.39}, {'connected_gene': 'GABARAPL1', 'score': 0.34}]
chr12	GH12I010152	10152822	10154600	1	[{'connected_gene': 'KLRA1P', 'score': 17.41}, {'connected_gene': 'LOC642846', 'score': 14.33}, {'connected_gene': 'TAS2R20', 'score': 13.12}, {'connected_gene': 'GABARAPL1', 'score': 11.4}, {'connected_gene': 'ENSG00000255958', 'score': 11.39}, {'connected_gene': 'TAS2R50', 'score': 11.14}, {'connected_gene': 'ENSG00000256682', 'score': 10.96}, {'connected_gene': 'DDX12P', 'score': 10.84}, {'connected_gene': 'TAS2R43', 'score': 10.56}, {'connected_gene': 'TAS2R46', 'score': 10.55}, {'connected_gene': 'CLEC9A', 'score': 10.01}, {'connected_gene': 'LOC102724020', 'score': 10.01}, {'connected_gene': 'OLR1', 'score': 7.96}, {'connected_gene': 'TMEM52B', 'score': 0.37}, {'connected_gene': 'CLEC7A', 'score': 0.34}]
chr12	GH12I010038	10038348	10040012	0.2	[{'connected_gene': 'LOC100421202', 'score': 550.77}, {'connected_gene': 'ENSG00000256626', 'score': 550.77}, {'connected_gene': 'CLEC7A', 'score': 12.37}, {'connected_gene': 'TMEM52B', 'score': 10.79}, {'connected_gene': 'ENSG00000255958', 'score': 10.38}, {'connected_gene': 'GABARAPL1', 'score': 10.37}, {'connected_gene': 'CLEC1A', 'score': 4.96}, {'connected_gene': 'CLEC9A', 'score': 0.44}]
chr12	GH12I010165	10165801	10166000	0.2	[{'connected_gene': 'ENSG00000255958', 'score': 11.27}, {'connected_gene': 'GABARAPL1', 'score': 11.27}, {'connected_gene': 'CLEC7A', 'score': 11.04}, {'connected_gene': 'OLR1', 'score': 7.25}, {'connected_gene': 'TMEM52B', 'score': 0.77}]
chr12	GH12I010160	10160801	10161200	0.2	[{'connected_gene': 'ENSG00000255958', 'score': 11.16}, {'connected_gene': 'GABARAPL1', 'score': 11.16}, {'connected_gene': 'TMEM52B', 'score': 5.21}, {'connected_gene': 'OLR1', 'score': 0.37}, {'connected_gene': 'CLEC7A', 'score': 0.29}]
chr12	GH12I010318	10318732	10323167	0.46	[{'connected_gene': 'ENSG00000255958', 'score': 10.06}, {'connected_gene': 'GABARAPL1', 'score': 10.06}, {'connected_gene': 'TMEM52B', 'score': 9.91}, {'connected_gene': 'KLRC1', 'score': 9.79}, {'connected_gene': 'KLRD1', 'score': 7.03}, {'connected_gene': 'ENSG00000256288', 'score': 0.37}, {'connected_gene': 'LOC105369656', 'score': 0.31}]