Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000266742 [[97301000, 97301078], [97301381, 97301634], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97347129]] [[97303537, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97345831]]
ENST00000429527 [[97301001, 97301078], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97347129]] [[97303537, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97345831]]
ENST00000554226 [[97301007, 97301078], [97301381, 97301402], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313896]] [[97301389, 97301402], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313896]]
ENST00000557478 [[97301007, 97301100], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328758]] [[97303537, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328758]]
ENST00000557092 [[97301010, 97301078], [97301381, 97301402], [97301479, 97301634], [97303529, 97303673], [97306500, 97306595], [97311398, 97311469]] [[97303537, 97303673], [97306500, 97306595], [97311398, 97311469]]
ENST00000555806 [[97301010, 97301078], [97301381, 97301402], [97311398, 97311515], [97313762, 97313903], [97318610, 97318720], [97330388, 97330496]] [[97311434, 97311515], [97313762, 97313903], [97318610, 97318634]]
ENST00000555114 [[97301015, 97301078], [97301381, 97301634], [97313762, 97313903], [97328753, 97328983], [97330388, 97330432]] None
ENST00000411739 [[97301015, 97301078], [97301381, 97301634], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97346253]] [[97311434, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97345831]]
ENST00000557400 [[97301034, 97301078], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97318610, 97318673]] None
ENST00000553609 [[97301034, 97301078], [97301381, 97301402], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330416]] [[97311434, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330416]]
ENST00000557454 [[97301034, 97301078], [97313762, 97313903], [97328753, 97328983], [97330388, 97330537]] None
ENST00000557644 [[97301243, 97301402], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97346048]] [[97301389, 97301402], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97345831]]
ENST00000457368 [[97306353, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97346999]] [[97311434, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97345831]]
NM_001135176 [[97301000, 97301078], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97347469]] [[97303537, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97345831]]
NM_001135177 [[97301000, 97301078], [97301381, 97301634], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97347469]] [[97311434, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97345831]]
NM_152905 [[97301000, 97301078], [97301381, 97301634], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97347469]] [[97303537, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97345831]]
NM_001135175 [[97301243, 97301402], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97347469]] [[97301389, 97301402], [97303529, 97303673], [97306500, 97306595], [97311398, 97311515], [97313762, 97313903], [97328753, 97328983], [97330388, 97330590], [97330975, 97331171], [97334186, 97334315], [97336354, 97336402], [97337337, 97337540], [97338416, 97338573], [97339470, 97339627], [97345209, 97345276], [97345726, 97345831]]
Promoter
Chrom Start End Description
chr12 97300995 97301054 CAGE_peak_1_at_NEDD1_5end
chr12 97306283 97306292 CAGE_peak_3_at_NEDD1_5end
chr12 97306295 97306304 CAGE_peak_4_at_NEDD1_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr12 GH12I096444 96444460 96449168 1.56 [{'connected_gene': 'CDK17', 'score': 32.28}, {'connected_gene': 'CFAP54', 'score': 11.13}, {'connected_gene': 'NEDD1', 'score': 2.23}, {'connected_gene': 'RN7SKP11', 'score': 0.37}, {'connected_gene': 'ENSG00000258272', 'score': 0.28}, {'connected_gene': 'GC12M096423', 'score': 0.1}]
chr12 GH12I096433 96433565 96435114 1.33 [{'connected_gene': 'CFAP54', 'score': 11.29}, {'connected_gene': 'CDK17', 'score': 7.84}, {'connected_gene': 'NEDD1', 'score': 2.47}, {'connected_gene': 'RN7SKP11', 'score': 0.44}, {'connected_gene': 'ENSG00000258272', 'score': 0.23}, {'connected_gene': 'GC12M096423', 'score': 0.09}]
chr12 GH12I096863 96862463 96862612 0.38 [{'connected_gene': 'NEDD1', 'score': 30.78}, {'connected_gene': 'GC12P096819', 'score': 0.26}, {'connected_gene': 'EEF1A1P33', 'score': 0.26}, {'connected_gene': 'GC12M096855', 'score': 0.25}, {'connected_gene': 'CFAP54', 'score': 0.05}]
chr12 GH12I096862 96862743 96862892 0.31 [{'connected_gene': 'NEDD1', 'score': 10.91}, {'connected_gene': 'EEF1A1P33', 'score': 0.28}, {'connected_gene': 'GC12P096819', 'score': 0.26}, {'connected_gene': 'GC12M096855', 'score': 0.25}, {'connected_gene': 'CFAP54', 'score': 0.05}]
chr12 GH12I096886 96886978 96887562 0.38 [{'connected_gene': 'NEDD1', 'score': 44.51}, {'connected_gene': 'EEF1A1P33', 'score': 0.37}, {'connected_gene': 'GC12M096855', 'score': 0.34}, {'connected_gene': 'GC12P096819', 'score': 0.2}]
chr12 GH12I096878 96878283 96879773 0.31 [{'connected_gene': 'NEDD1', 'score': 41.61}, {'connected_gene': 'EEF1A1P33', 'score': 0.34}, {'connected_gene': 'GC12M096855', 'score': 0.29}, {'connected_gene': 'GC12P096819', 'score': 0.22}]
chr12 GH12I096889 96889061 96890980 0.72 [{'connected_gene': 'NEDD1', 'score': 44.2}, {'connected_gene': 'EEF1A1P33', 'score': 0.39}, {'connected_gene': 'GC12M096855', 'score': 0.37}, {'connected_gene': 'GC12P096819', 'score': 0.19}]
chr12 GH12I096719 96719606 96720853 0.69 [{'connected_gene': 'NEDD1', 'score': 12.06}, {'connected_gene': 'GC12P096684', 'score': 0.28}, {'connected_gene': 'GC12P096683', 'score': 0.28}, {'connected_gene': 'GC12P096819', 'score': 0.15}, {'connected_gene': 'CFAP54', 'score': 0.07}]
chr12 GH12I096809 96809772 96811852 0.87 [{'connected_gene': 'NEDD1', 'score': 21.73}, {'connected_gene': 'GC12P096819', 'score': 0.44}, {'connected_gene': 'GC12P096684', 'score': 0.13}, {'connected_gene': 'GC12P096683', 'score': 0.13}, {'connected_gene': 'CFAP54', 'score': 0.05}]
chr12 GH12I096911 96911401 96911600 0.38 [{'connected_gene': 'NEDD1', 'score': 57.63}, {'connected_gene': 'GC12M096855', 'score': 0.77}, {'connected_gene': 'GC12M096980', 'score': 0.2}, {'connected_gene': 'ENSG00000202368', 'score': 0.2}]
chr12 GH12I096906 96906144 96908767 2.03 [{'connected_gene': 'NEDD1', 'score': 604.48}, {'connected_gene': 'GC12M096855', 'score': 550.77}]
chr12 GH12I096980 96980350 96981756 0.69 [{'connected_gene': 'GC12M096980', 'score': 550.77}, {'connected_gene': 'ENSG00000202368', 'score': 550.77}, {'connected_gene': 'NEDD1', 'score': 26.78}, {'connected_gene': 'LOC105369928', 'score': 0.77}]
chr12 GH12I096909 96909201 96909600 0.2 [{'connected_gene': 'GC12M096855', 'score': 550.77}, {'connected_gene': 'NEDD1', 'score': 0.77}, {'connected_gene': 'GC12M096980', 'score': 0.19}, {'connected_gene': 'ENSG00000202368', 'score': 0.19}]

© 2018 bmi.sjtu.edu.cn. All rights reserved.
浙ICP备18030141号.