PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000497241	[[111968530, 111968604], [111973203, 111973295], [111980529, 111980640], [111991640, 111991785], [111992209, 111992279], [111995102, 111995278], [111996429, 111996596]]	[[111968557, 111968604], [111973203, 111973295], [111980529, 111980640], [111991640, 111991645]]
ENST00000283547	[[111973014, 111973109], [111973203, 111973295], [111980529, 111980640], [111992209, 111992279], [111995102, 111995278], [111996429, 111996594]]	[[111973237, 111973295], [111980529, 111980640], [111992209, 111992279], [111995102, 111995278], [111996429, 111996470]]
NM_001303133	[[111968531, 111968604], [111973203, 111973295], [111980529, 111980640], [111991640, 111991785], [111992209, 111992279], [111995102, 111995278], [111996429, 111996594]]	[[111980547, 111980640], [111991640, 111991785], [111992209, 111992279], [111995102, 111995278], [111996429, 111996470]]
NM_152324	[[111972990, 111973109], [111973203, 111973295], [111980529, 111980640], [111992209, 111992279], [111995102, 111995278], [111996429, 111996594]]	[[111973237, 111973295], [111980529, 111980640], [111992209, 111992279], [111995102, 111995278], [111996429, 111996470]]

Promoter

Chrom	Start	End	Description
chr13	111972967	111972974	CAGE_peak_2_at_C13orf16_5end
chr13	111972980	111972994	CAGE_peak_1_at_C13orf16_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I111209	111209288	111213304	0.96	[{'connected_gene': 'ARHGEF7', 'score': 12.94}, {'connected_gene': 'TEX29', 'score': 10.57}, {'connected_gene': 'ANKRD10', 'score': 10.08}, {'connected_gene': 'SALL4P4', 'score': 0.31}, {'connected_gene': 'GC13P111283', 'score': 0.19}]
chr13	GH13I111238	111238933	111243454	0.38	[{'connected_gene': 'ARHGEF7', 'score': 25.94}, {'connected_gene': 'TEX29', 'score': 16.4}, {'connected_gene': 'ARHGEF7-AS2', 'score': 11.04}, {'connected_gene': 'ANKRD10', 'score': 10.04}, {'connected_gene': 'GC13P111283', 'score': 0.26}, {'connected_gene': 'SALL4P4', 'score': 0.22}]
chr13	GH13I111214	111214282	111217000	1.15	[{'connected_gene': 'ARHGEF7', 'score': 14.36}, {'connected_gene': 'TEX29', 'score': 5.1}, {'connected_gene': 'SALL4P4', 'score': 0.29}, {'connected_gene': 'GC13P111283', 'score': 0.2}]
chr13	GH13I111217	111217111	111220384	0.99	[{'connected_gene': 'ARHGEF7', 'score': 14.55}, {'connected_gene': 'TEX29', 'score': 5.5}, {'connected_gene': 'SALL4P4', 'score': 0.28}, {'connected_gene': 'GC13P111283', 'score': 0.2}]
chr13	GH13I111278	111278466	111283388	0.58	[{'connected_gene': 'ARHGEF7', 'score': 27.26}, {'connected_gene': 'TEX29', 'score': 16.4}, {'connected_gene': 'GC13P111283', 'score': 0.77}, {'connected_gene': 'SALL4P4', 'score': 0.15}]
chr13	GH13I111336	111336760	111338264	0.46	[{'connected_gene': 'ARHGEF7', 'score': 7.91}, {'connected_gene': 'LOC105370365', 'score': 0.37}, {'connected_gene': 'TEX29', 'score': 0.34}, {'connected_gene': 'GC13M111529', 'score': 0.08}]
chr13	GH13I110943	110943699	110945043	1.17	[{'connected_gene': 'ANKRD10', 'score': 23.24}, {'connected_gene': 'TEX29', 'score': 4.96}, {'connected_gene': 'ARHGEF7', 'score': 4.79}, {'connected_gene': 'PARP1P1', 'score': 0.44}, {'connected_gene': 'LINC00431', 'score': 0.34}]
chr13	GH13I111324	111324068	111324388	0.26	[{'connected_gene': 'TEX29', 'score': 6.97}, {'connected_gene': 'ARHGEF7', 'score': 5.71}, {'connected_gene': 'LOC105370365', 'score': 0.77}, {'connected_gene': 'GC13M111529', 'score': 0.08}]
chr13	GH13I111267	111267295	111268828	0.2	[{'connected_gene': 'TEX29', 'score': 11.08}, {'connected_gene': 'ARHGEF7', 'score': 9.59}, {'connected_gene': 'GC13P111283', 'score': 0.37}, {'connected_gene': 'SALL4P4', 'score': 0.17}]
chr13	GH13I111359	111359354	111359503	0.43	[{'connected_gene': 'TEX29', 'score': 11.49}, {'connected_gene': 'LOC105370365', 'score': 0.28}, {'connected_gene': 'GC13M111529', 'score': 0.1}]
chr13	GH13I111384	111384914	111385694	0.98	[{'connected_gene': 'TEX29', 'score': 5.52}, {'connected_gene': 'LOC105370365', 'score': 0.21}, {'connected_gene': 'GC13M111529', 'score': 0.1}]
chr13	GH13I111320	111320593	111320652	0.73	[{'connected_gene': 'TEX29', 'score': 550.77}, {'connected_gene': 'PIR44781', 'score': 550.77}, {'connected_gene': 'LOC105370365', 'score': 550.77}, {'connected_gene': 'GC13M111529', 'score': 0.08}]
chr13	GH13I111268	111268932	111268957	0.2	[{'connected_gene': 'TEX29', 'score': 11.08}, {'connected_gene': 'GC13P111283', 'score': 0.39}, {'connected_gene': 'SALL4P4', 'score': 0.17}, {'connected_gene': 'ARHGEF7', 'score': 0.1}]
chr13	GH13I110971	110971634	110971753	0.57	[{'connected_gene': 'LOC105370364', 'score': 550.77}, {'connected_gene': 'TEX29', 'score': 48.08}, {'connected_gene': 'ING1', 'score': 14.53}, {'connected_gene': 'LINC00431', 'score': 0.44}, {'connected_gene': 'GC13P110984', 'score': 0.39}]