PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000334574	[[83424113, 83428352], [83430853, 83431030], [83433917, 83434050], [83434649, 83434783], [83437631, 83437782], [83438501, 83438636], [83440824, 83440980], [83447517, 83447639], [83448996, 83449019], [83451546, 83451777], [83455262, 83455358], [83455503, 83456220], [83474717, 83474821]]	[[83428099, 83428352], [83430853, 83431030], [83433917, 83434050], [83434649, 83434783], [83437631, 83437782], [83438501, 83438636], [83440824, 83440980], [83447517, 83447639], [83448996, 83449019], [83451546, 83451777], [83455262, 83455358], [83455503, 83456142]]
ENST00000541889	[[83428025, 83428352], [83430853, 83431030], [83433917, 83434050], [83434649, 83434783], [83437631, 83437782], [83440824, 83440980], [83447517, 83447639], [83448996, 83449019], [83451546, 83451777], [83455262, 83455358], [83455503, 83456220], [83474717, 83474806]]	[[83428099, 83428352], [83430853, 83431030], [83433917, 83434050], [83434649, 83434783], [83437631, 83437782], [83440824, 83440980], [83447517, 83447639], [83448996, 83449019], [83451546, 83451777], [83455262, 83455358], [83455503, 83456142]]
ENST00000561368	[[83455839, 83456220], [83465001, 83465118], [83474717, 83474822]]	[[83455839, 83456142]]
NM_001281805	[[83424116, 83428352], [83430853, 83431030], [83433917, 83434050], [83434649, 83434783], [83437631, 83437782], [83440824, 83440980], [83447517, 83447639], [83448996, 83449019], [83451546, 83451777], [83455262, 83455358], [83455503, 83456220], [83465001, 83465118], [83474717, 83474822]]	[[83428099, 83428352], [83430853, 83431030], [83433917, 83434050], [83434649, 83434783], [83437631, 83437782], [83440824, 83440980], [83447517, 83447639], [83448996, 83449019], [83451546, 83451777], [83455262, 83455358], [83455503, 83456142]]
NM_001007122	[[83424116, 83428352], [83430853, 83431030], [83433917, 83434050], [83434649, 83434783], [83437631, 83437782], [83438501, 83438636], [83440824, 83440980], [83447517, 83447639], [83448996, 83449019], [83451546, 83451777], [83455262, 83455358], [83455503, 83456220], [83474717, 83474822]]	[[83428099, 83428352], [83430853, 83431030], [83433917, 83434050], [83434649, 83434783], [83437631, 83437782], [83438501, 83438636], [83440824, 83440980], [83447517, 83447639], [83448996, 83449019], [83451546, 83451777], [83455262, 83455358], [83455503, 83456142]]
NM_001281806	[[83424116, 83428352], [83430853, 83431030], [83433917, 83434050], [83434649, 83434783], [83437631, 83437782], [83440824, 83440980], [83447517, 83447639], [83448996, 83449019], [83451546, 83451777], [83455262, 83455358], [83455503, 83456220], [83474717, 83474822]]	[[83428099, 83428352], [83430853, 83431030], [83433917, 83434050], [83434649, 83434783], [83437631, 83437782], [83440824, 83440980], [83447517, 83447639], [83448996, 83449019], [83451546, 83451777], [83455262, 83455358], [83455503, 83456142]]

Promoter

Chrom	Start	End	Description
chr15	83474761	83474775	CAGE_peak_2_at_FSD2_5end
chr15	83474811	83474826	CAGE_peak_1_at_FSD2_5end
chr15	83474846	83474850	CAGE_peak_3_at_FSD2_5end
chr15	83474864	83474869	CAGE_peak_4_at_FSD2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I082950	82950863	82953437	1.81	[{'connected_gene': 'HOMER2', 'score': 550.29}, {'connected_gene': 'FAM103A1', 'score': 38.36}, {'connected_gene': 'AP3B2', 'score': 15.44}, {'connected_gene': 'C15orf40', 'score': 10.32}, {'connected_gene': 'FSD2', 'score': 9.79}, {'connected_gene': 'GC15M082960', 'score': 0.44}, {'connected_gene': 'PIR42152', 'score': 0.29}, {'connected_gene': 'LOC105370928', 'score': 0.22}]
chr15	GH15I082852	82852612	82853979	0.74	[{'connected_gene': 'FAM103A1', 'score': 26.82}, {'connected_gene': 'C15orf40', 'score': 11.15}, {'connected_gene': 'HOMER2', 'score': 11.14}, {'connected_gene': 'FSD2', 'score': 10.51}, {'connected_gene': 'WHAMM', 'score': 9.0}, {'connected_gene': 'GC15M082841', 'score': 0.44}, {'connected_gene': 'GC15P082870', 'score': 0.37}]
chr15	GH15I082848	82848958	82851175	1.21	[{'connected_gene': 'FAM103A1', 'score': 26.82}, {'connected_gene': 'C15orf40', 'score': 21.82}, {'connected_gene': 'WHAMM', 'score': 11.97}, {'connected_gene': 'HOMER2', 'score': 11.14}, {'connected_gene': 'FSD2', 'score': 10.63}, {'connected_gene': 'EFL1', 'score': 9.85}, {'connected_gene': 'GOLGA6L9', 'score': 6.27}, {'connected_gene': 'GC15M082841', 'score': 0.77}, {'connected_gene': 'GC15P082870', 'score': 0.37}]
chr15	GH15I082763	82763183	82764491	0.77	[{'connected_gene': 'WHAMM', 'score': 27.44}, {'connected_gene': 'HDGFL3', 'score': 6.37}, {'connected_gene': 'SCARNA15', 'score': 0.44}, {'connected_gene': 'GC15P082732', 'score': 0.29}, {'connected_gene': 'FSD2', 'score': 0.26}]
chr15	GH15I082803	82803710	82813513	2.77	[{'connected_gene': 'WHAMM', 'score': 626.7}, {'connected_gene': 'FSD2', 'score': 550.77}, {'connected_gene': 'AP3B2', 'score': 26.17}, {'connected_gene': 'FAM103A1', 'score': 14.52}, {'connected_gene': 'SCARNA15', 'score': 11.34}, {'connected_gene': 'EFL1', 'score': 11.09}, {'connected_gene': 'GOLGA6L9', 'score': 9.76}, {'connected_gene': 'C15orf40', 'score': 4.53}, {'connected_gene': 'GC15M082841', 'score': 0.28}]
chr15	GH15I082749	82749202	82752469	1.57	[{'connected_gene': 'SNHG21', 'score': 550.77}, {'connected_gene': 'AP3B2', 'score': 11.43}, {'connected_gene': 'FSD2', 'score': 10.74}, {'connected_gene': 'HOMER2', 'score': 10.34}, {'connected_gene': 'C15orf40', 'score': 9.8}, {'connected_gene': 'HDGFL3', 'score': 5.93}, {'connected_gene': 'GOLGA6L10', 'score': 5.81}, {'connected_gene': 'GC15M082753', 'score': 0.77}, {'connected_gene': 'ENSG00000259442', 'score': 0.44}, {'connected_gene': 'GC15P082732', 'score': 0.37}]
chr15	GH15I082743	82743404	82743457	0.22	[{'connected_gene': 'ENSG00000259442', 'score': 550.77}, {'connected_gene': 'AP3B2', 'score': 11.74}, {'connected_gene': 'FSD2', 'score': 10.14}, {'connected_gene': 'HDGFL3', 'score': 5.99}, {'connected_gene': 'ACTG1P17', 'score': 0.77}, {'connected_gene': 'GC15P082732', 'score': 0.39}]
chr15	GH15I082741	82741396	82743274	0.31	[{'connected_gene': 'ENSG00000259442', 'score': 550.77}, {'connected_gene': 'AP3B2', 'score': 17.78}, {'connected_gene': 'FSD2', 'score': 16.44}, {'connected_gene': 'GOLGA6L9', 'score': 9.53}, {'connected_gene': 'ACTG1P17', 'score': 0.77}, {'connected_gene': 'GC15P082732', 'score': 0.44}]
chr15	GH15I083734	83734529	83734678	0.56	[{'connected_gene': 'GC15M083715', 'score': 550.77}, {'connected_gene': 'GC15M083714', 'score': 550.77}, {'connected_gene': 'FSD2', 'score': 4.28}, {'connected_gene': 'RNU6-401P', 'score': 0.37}, {'connected_gene': 'ADAMTSL3', 'score': 0.18}]