PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000322247	[[13663345, 13666712], [13671860, 13671972], [13681603, 13682104], [13697545, 13697673], [13726327, 13726559]]	[[13666478, 13666712], [13671860, 13671972], [13681603, 13682076]]
ENST00000402563	[[13663349, 13666712], [13671860, 13671972], [13681603, 13682104], [13726327, 13726591]]	[[13666478, 13666712], [13671860, 13671972], [13681603, 13682076]]
ENST00000585785	[[13665881, 13666712], [13726327, 13726591]]	None
ENST00000588475	[[13666001, 13666712], [13681603, 13682104], [13726327, 13726504]]	None
ENST00000589346	[[13666229, 13666712], [13670869, 13670967], [13671860, 13671938]]	[[13666684, 13666712], [13670869, 13670967], [13671860, 13671938]]
ENST00000592976	[[13666492, 13666712], [13671860, 13671972], [13681603, 13682104], [13726327, 13726585]]	[[13666492, 13666712], [13671860, 13671972], [13681603, 13682076]]
ENST00000591269	[[13671910, 13671972], [13681603, 13682104], [13687741, 13687881], [13726327, 13726662]]	[[13671910, 13671972], [13681603, 13682076]]
NM_001098801	[[13663345, 13666712], [13671860, 13671972], [13681603, 13682104], [13687741, 13687881], [13726327, 13726591]]	[[13666478, 13666712], [13671860, 13671972], [13681603, 13682076]]
NM_152352	[[13663345, 13666712], [13671860, 13671972], [13681603, 13682104], [13726327, 13726591]]	[[13666478, 13666712], [13671860, 13671972], [13681603, 13682076]]

Promoter

Chrom	Start	End	Description
chr18	13726426	13726439	CAGE_peak_4_at_FAM210A_5end
chr18	13726440	13726453	CAGE_peak_2_at_FAM210A_5end
chr18	13726457	13726468	CAGE_peak_3_at_FAM210A_5end
chr18	13726472	13726475	CAGE_peak_5_at_FAM210A_5end
chr18	13726510	13726598	CAGE_peak_1_at_FAM210A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr18	GH18I013725	13725071	13728249	2.07	[{'connected_gene': 'RNMT', 'score': 567.11}, {'connected_gene': 'FAM210A', 'score': 555.24}, {'connected_gene': 'PTPN2', 'score': 12.71}, {'connected_gene': 'CEP192', 'score': 11.99}]
chr18	GH18I013717	13717265	13717691	0.31	[{'connected_gene': 'RNMT', 'score': 16.77}, {'connected_gene': 'RN7SL362P', 'score': 0.77}, {'connected_gene': 'FAM210A', 'score': 0.44}]
chr18	GH18I013610	13610476	13617031	2.07	[{'connected_gene': 'LDLRAD4', 'score': 564.02}, {'connected_gene': 'RNMT', 'score': 3.58}, {'connected_gene': 'FAM210A', 'score': 1.77}, {'connected_gene': 'MIR4526', 'score': 0.77}, {'connected_gene': 'ENSG00000266954', 'score': 0.29}]
chr18	GH18I013579	13579202	13580595	0.83	[{'connected_gene': 'LDLRAD4', 'score': 3.78}, {'connected_gene': 'RNMT', 'score': 2.64}, {'connected_gene': 'FAM210A', 'score': 2.36}, {'connected_gene': 'ENSG00000267503', 'score': 0.39}, {'connected_gene': 'MIR4526', 'score': 0.29}]
chr18	GH18I013576	13576395	13578868	1.52	[{'connected_gene': 'LDLRAD4', 'score': 4.25}, {'connected_gene': 'RNMT', 'score': 2.44}, {'connected_gene': 'FAM210A', 'score': 2.26}, {'connected_gene': 'ENSG00000267503', 'score': 0.39}, {'connected_gene': 'MIR4526', 'score': 0.29}]
chr18	GH18I013565	13565202	13569799	1.58	[{'connected_gene': 'PSMG2', 'score': 5.14}, {'connected_gene': 'LDLRAD4', 'score': 4.81}, {'connected_gene': 'RNMT', 'score': 2.12}, {'connected_gene': 'FAM210A', 'score': 1.97}, {'connected_gene': 'ENSG00000267503', 'score': 0.77}, {'connected_gene': 'MIR4526', 'score': 0.26}]
chr18	GH18I013647	13647219	13650798	0.43	[{'connected_gene': 'FAM210A', 'score': 4.84}, {'connected_gene': 'ENSG00000266954', 'score': 0.77}, {'connected_gene': 'ENSG00000279962', 'score': 0.21}, {'connected_gene': 'LDLRAD4', 'score': 0.04}]
chr18	GH18I013700	13700640	13700699	0.5	[{'connected_gene': 'FAM210A', 'score': 550.31}, {'connected_gene': 'ENSG00000279962', 'score': 0.44}, {'connected_gene': 'ENSG00000266954', 'score': 0.23}]
chr18	GH18I013653	13653307	13655145	0.2	[{'connected_gene': 'FAM210A', 'score': 6.06}, {'connected_gene': 'ENSG00000266954', 'score': 0.44}, {'connected_gene': 'ENSG00000279962', 'score': 0.22}]
chr18	GH18I013675	13675001	13675200	0.31	[{'connected_gene': 'FAM210A', 'score': 4.41}, {'connected_gene': 'ENSG00000266954', 'score': 0.31}, {'connected_gene': 'ENSG00000279962', 'score': 0.28}]
chr18	GH18I013709	13709667	13711987	0.52	[{'connected_gene': 'ENSG00000279962', 'score': 550.77}, {'connected_gene': 'RNMT', 'score': 12.27}, {'connected_gene': 'FAM210A', 'score': 5.08}, {'connected_gene': 'RN7SL362P', 'score': 0.77}]
chr18	GH18I013562	13562026	13564808	1.5	[{'connected_gene': 'ENSG00000267503', 'score': 550.77}, {'connected_gene': 'PIR42063', 'score': 550.77}, {'connected_gene': 'LDLRAD4', 'score': 19.11}, {'connected_gene': 'PSMG2', 'score': 4.53}, {'connected_gene': 'FAM210A', 'score': 2.71}, {'connected_gene': 'RNMT', 'score': 2.35}]
chr18	GH18I013673	13673401	13673800	0.31	[{'connected_gene': 'ENSG00000266954', 'score': 0.31}, {'connected_gene': 'ENSG00000279962', 'score': 0.28}, {'connected_gene': 'FAM210A', 'score': 0.23}]