PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000515683	[[100257648, 100257933], [100260733, 100260872], [100261731, 100261867], [100263951, 100264212], [100266018, 100266238], [100266335, 100266423], [100268162, 100268301], [100268901, 100269003], [100273814, 100274184]]	[[100257908, 100257933], [100260733, 100260872], [100261731, 100261867], [100263951, 100264212], [100266018, 100266238], [100266335, 100266423], [100268162, 100268301], [100268901, 100269003], [100273814, 100273832]]
ENST00000510055	[[100264082, 100264212], [100266018, 100266238], [100266335, 100266423], [100268162, 100268301], [100268901, 100269003], [100272169, 100272289], [100273814, 100273887]]	None
ENST00000511397	[[100264167, 100264212], [100266018, 100266238], [100266335, 100266423], [100268162, 100268301], [100273814, 100273903]]	None
ENST00000505942	[[100266044, 100266238], [100266335, 100266377], [100268162, 100268301], [100268901, 100269003], [100273814, 100273901]]	None
NM_000669	[[100257648, 100257933], [100260733, 100260872], [100261731, 100261867], [100263951, 100264212], [100266018, 100266238], [100266335, 100266423], [100268162, 100268301], [100268901, 100269003], [100273814, 100274202]]	[[100257908, 100257933], [100260733, 100260872], [100261731, 100261867], [100263951, 100264212], [100266018, 100266238], [100266335, 100266423], [100268162, 100268301], [100268901, 100269003], [100273814, 100273832]]
NR_133005	[[100257648, 100257933], [100260733, 100260872], [100261731, 100261867], [100263995, 100264212], [100266018, 100266238], [100266335, 100266423], [100268162, 100268301], [100268901, 100269003], [100273814, 100274202]]	None

Promoter

Chrom	Start	End	Description
chr4	100273894	100273908	CAGE_peak_1_at_ADH1C_5end
chr4	100273911	100273922	CAGE_peak_2_at_ADH1C_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I099351	99351357	99351741	0.34	[{'connected_gene': 'ADH1C', 'score': 566.77}, {'connected_gene': 'ADH1B', 'score': 560.95}, {'connected_gene': 'ADH6', 'score': 24.38}, {'connected_gene': 'ADH1A', 'score': 18.68}, {'connected_gene': 'ADH4', 'score': 16.45}, {'connected_gene': 'PIR40463', 'score': 0.28}]
chr4	GH04I099352	99352617	99353811	0.96	[{'connected_gene': 'ADH1C', 'score': 559.98}, {'connected_gene': 'ADH1B', 'score': 550.77}, {'connected_gene': 'ADH1A', 'score': 12.29}, {'connected_gene': 'ADH5', 'score': 5.73}, {'connected_gene': 'LOC102723576', 'score': 0.23}]
chr4	GH04I099382	99382532	99385657	1.39	[{'connected_gene': 'ADH1C', 'score': 11.45}, {'connected_gene': 'ADH1A', 'score': 8.97}, {'connected_gene': 'MTTP', 'score': 5.12}, {'connected_gene': 'ADH5', 'score': 2.38}, {'connected_gene': 'LOC102723576', 'score': 0.34}]
chr4	GH04I099389	99389539	99391242	0.51	[{'connected_gene': 'ADH1C', 'score': 11.43}, {'connected_gene': 'LOC100507053', 'score': 10.38}, {'connected_gene': 'ADH1A', 'score': 10.2}, {'connected_gene': 'ADH5', 'score': 4.92}, {'connected_gene': 'LOC102723576', 'score': 0.39}]
chr4	GH04I099394	99394544	99396473	0.97	[{'connected_gene': 'ADH1C', 'score': 11.58}, {'connected_gene': 'LOC100507053', 'score': 10.38}, {'connected_gene': 'ADH1A', 'score': 10.19}, {'connected_gene': 'RNU7-149P', 'score': 10.16}, {'connected_gene': 'MTTP', 'score': 4.86}, {'connected_gene': 'LOC102723576', 'score': 0.44}]
chr4	GH04I099381	99381054	99381238	0.39	[{'connected_gene': 'ADH1A', 'score': 36.62}, {'connected_gene': 'ADH4', 'score': 34.81}, {'connected_gene': 'ADH1C', 'score': 27.4}, {'connected_gene': 'ADH1B', 'score': 22.22}, {'connected_gene': 'ADH6', 'score': 14.39}, {'connected_gene': 'LOC100507053', 'score': 10.46}, {'connected_gene': 'LOC102723576', 'score': 0.34}]
chr4	GH04I099387	99387731	99389429	0.2	[{'connected_gene': 'ADH1A', 'score': 8.53}, {'connected_gene': 'LOC102723576', 'score': 0.37}, {'connected_gene': 'ADH1C', 'score': 0.28}]
chr4	GH04I099321	99321642	99325813	0.88	[{'connected_gene': 'ADH1A', 'score': 22.28}, {'connected_gene': 'LOC100507053', 'score': 11.22}, {'connected_gene': 'ADH1C', 'score': 8.81}, {'connected_gene': 'ENSG00000272777', 'score': 4.65}, {'connected_gene': 'PIR40463', 'score': 0.44}, {'connected_gene': 'ADH1B', 'score': 0.31}]
chr4	GH04I099402	99402671	99406253	1.64	[{'connected_gene': 'LOC102723576', 'score': 550.77}, {'connected_gene': 'ADH4', 'score': 14.36}, {'connected_gene': 'ADH6', 'score': 11.33}, {'connected_gene': 'LOC100507053', 'score': 10.93}, {'connected_gene': 'PCNAP1', 'score': 9.94}, {'connected_gene': 'ADH5', 'score': 8.86}, {'connected_gene': 'ADH1A', 'score': 6.13}, {'connected_gene': 'ADH1B', 'score': 2.8}, {'connected_gene': 'ADH1C', 'score': 2.28}]