PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000361170	[[156495196, 156496391], [156497743, 156497852], [156498300, 156498402], [156498707, 156498874], [156499896, 156500109], [156500951, 156501039], [156502771, 156502898], [156503564, 156503667], [156503800, 156503933], [156504292, 156504525], [156504954, 156505039], [156506972, 156507113], [156508600, 156508825], [156509165, 156509329], [156509629, 156509782], [156510499, 156510708], [156513772, 156513842], [156513943, 156514015], [156514180, 156514264], [156517864, 156518035], [156518139, 156518279], [156518372, 156518540], [156520052, 156520143], [156521496, 156521660], [156521765, 156521887], [156524026, 156524184], [156526324, 156526485], [156530725, 156530813], [156531629, 156531793], [156532378, 156532457], [156532925, 156533104], [156533344, 156533458], [156533548, 156533616], [156534406, 156534483], [156535818, 156535896], [156536181, 156536338], [156539167, 156539255], [156542284, 156542332]]	[[156496277, 156496391], [156497743, 156497852], [156498300, 156498402], [156498707, 156498874], [156499896, 156500109], [156500951, 156501039], [156502771, 156502898], [156503564, 156503667], [156503800, 156503933], [156504292, 156504525], [156504954, 156505039], [156506972, 156507113], [156508600, 156508825], [156509165, 156509329], [156509629, 156509782], [156510499, 156510708], [156513772, 156513842], [156513943, 156514015], [156514180, 156514264], [156517864, 156518035], [156518139, 156518279], [156518372, 156518540], [156520052, 156520143], [156521496, 156521660], [156521765, 156521887], [156524026, 156524184], [156526324, 156526485], [156530725, 156530813], [156531629, 156531793], [156532378, 156532457], [156532925, 156533104], [156533344, 156533458], [156533548, 156533616], [156534406, 156534483], [156535818, 156535896], [156536181, 156536338], [156539167, 156539255], [156542284, 156542321]]
ENST00000491900	[[156495196, 156495344], [156496014, 156496391], [156497743, 156497852], [156498300, 156498402], [156498707, 156498874], [156499896, 156500109], [156500951, 156501039], [156502771, 156502898], [156503564, 156503667], [156503800, 156503933], [156504292, 156504525], [156504954, 156505039], [156506972, 156507113], [156508600, 156508825], [156509165, 156509329], [156509629, 156509782], [156510499, 156510708], [156513772, 156513842], [156513943, 156514015], [156514180, 156514264], [156517864, 156518035], [156518139, 156518279], [156518372, 156518540], [156520052, 156520143], [156521496, 156521660], [156521765, 156521887], [156524026, 156524184], [156526324, 156526485], [156530725, 156530813], [156531629, 156531793], [156532378, 156532457], [156532925, 156533104], [156533344, 156533458], [156533548, 156533616], [156534406, 156534483], [156535818, 156535896], [156536181, 156536338], [156542284, 156542396]]	[[156496277, 156496391], [156497743, 156497852], [156498300, 156498402], [156498707, 156498874], [156499896, 156500109], [156500951, 156501039], [156502771, 156502898], [156503564, 156503667], [156503800, 156503933], [156504292, 156504525], [156504954, 156505039], [156506972, 156507113], [156508600, 156508825], [156509165, 156509329], [156509629, 156509782], [156510499, 156510708], [156513772, 156513842], [156513943, 156514015], [156514180, 156514264], [156517864, 156518035], [156518139, 156518279], [156518372, 156518540], [156520052, 156520143], [156521496, 156521660], [156521765, 156521887], [156524026, 156524184], [156526324, 156526485], [156530725, 156530813], [156531629, 156531793], [156532378, 156532457], [156532925, 156533104], [156533344, 156533458], [156533548, 156533616], [156534406, 156534483], [156535818, 156535896], [156536181, 156536334]]
ENST00000476565	[[156506622, 156507113], [156508600, 156508653]]	None
ENST00000498755	[[156506967, 156507113], [156508600, 156509257]]	None
NM_178229	[[156495196, 156496391], [156497743, 156497852], [156498300, 156498402], [156498707, 156498874], [156499896, 156500109], [156500951, 156501039], [156502771, 156502898], [156503564, 156503667], [156503800, 156503933], [156504292, 156504525], [156504954, 156505039], [156506972, 156507113], [156508600, 156508825], [156509165, 156509329], [156509629, 156509782], [156510499, 156510708], [156513772, 156513842], [156513943, 156514015], [156514180, 156514264], [156517864, 156518035], [156518139, 156518279], [156518372, 156518540], [156520052, 156520143], [156521496, 156521660], [156521765, 156521887], [156524026, 156524184], [156526324, 156526485], [156530725, 156530813], [156531629, 156531793], [156532378, 156532457], [156532925, 156533104], [156533344, 156533458], [156533548, 156533616], [156534406, 156534483], [156535818, 156535896], [156536181, 156536338], [156539167, 156539255], [156542284, 156542396]]	[[156496277, 156496391], [156497743, 156497852], [156498300, 156498402], [156498707, 156498874], [156499896, 156500109], [156500951, 156501039], [156502771, 156502898], [156503564, 156503667], [156503800, 156503933], [156504292, 156504525], [156504954, 156505039], [156506972, 156507113], [156508600, 156508825], [156509165, 156509329], [156509629, 156509782], [156510499, 156510708], [156513772, 156513842], [156513943, 156514015], [156514180, 156514264], [156517864, 156518035], [156518139, 156518279], [156518372, 156518540], [156520052, 156520143], [156521496, 156521660], [156521765, 156521887], [156524026, 156524184], [156526324, 156526485], [156530725, 156530813], [156531629, 156531793], [156532378, 156532457], [156532925, 156533104], [156533344, 156533458], [156533548, 156533616], [156534406, 156534483], [156535818, 156535896], [156536181, 156536338], [156539167, 156539255], [156542284, 156542321]]

Promoter

Chrom	Start	End	Description
chr1	156521811	156521820	CAGE_peak_5_at_IQGAP3_5end
chr1	156521838	156521843	CAGE_peak_6_at_IQGAP3_5end
chr1	156521868	156521874	CAGE_peak_7_at_IQGAP3_5end
chr1	156521881	156521893	CAGE_peak_4_at_IQGAP3_5end
chr1	156542328	156542364	CAGE_peak_1_at_IQGAP3_5end
chr1	156542366	156542377	CAGE_peak_2_at_IQGAP3_5end
chr1	156542388	156542400	CAGE_peak_3_at_IQGAP3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I156539	156539601	156541400	0.31	[{'connected_gene': 'GPATCH4', 'score': 4.64}, {'connected_gene': 'GC01P156524', 'score': 0.37}, {'connected_gene': 'IQGAP3', 'score': 0.29}]
chr1	GH01I156419	156419800	156424054	1.86	[{'connected_gene': 'MIR9-1', 'score': 550.77}, {'connected_gene': 'C1orf61', 'score': 550.39}, {'connected_gene': 'KHDC4', 'score': 34.75}, {'connected_gene': 'GON4L', 'score': 29.04}, {'connected_gene': 'RRNAD1', 'score': 27.38}, {'connected_gene': 'ENSG00000271267', 'score': 22.14}, {'connected_gene': 'MSTO1', 'score': 20.94}, {'connected_gene': 'MSTO2P', 'score': 20.27}, {'connected_gene': 'CCT3', 'score': 19.98}, {'connected_gene': 'PRCC', 'score': 19.35}, {'connected_gene': 'ISG20L2', 'score': 14.35}, {'connected_gene': 'ASH1L-AS1', 'score': 11.33}, {'connected_gene': 'LOC246784', 'score': 11.14}, {'connected_gene': 'YY1AP1', 'score': 10.86}, {'connected_gene': 'ENSG00000246203', 'score': 10.85}, {'connected_gene': 'ETV3', 'score': 9.75}, {'connected_gene': 'IQGAP3', 'score': 5.0}, {'connected_gene': 'PAQR6', 'score': 4.63}, {'connected_gene': 'GC01M156428', 'score': 0.44}]
chr1	GH01I156579	156579674	156579733	0.84	[{'connected_gene': 'TTC24', 'score': 550.77}, {'connected_gene': 'IQGAP3', 'score': 0.44}]
chr1	GH01I156559	156559789	156560038	0.46	[{'connected_gene': 'NAXE', 'score': 17.73}, {'connected_gene': 'HAPLN2', 'score': 10.84}, {'connected_gene': 'C1orf61', 'score': 10.42}, {'connected_gene': 'MIR9-1', 'score': 10.24}, {'connected_gene': 'RRNAD1', 'score': 9.76}, {'connected_gene': 'ISG20L2', 'score': 9.76}, {'connected_gene': 'IQGAP3', 'score': 0.39}, {'connected_gene': 'GC01P156524', 'score': 0.28}]
chr1	GH01I156551	156551085	156554419	0.95	[{'connected_gene': 'NAXE', 'score': 19.02}, {'connected_gene': 'MEF2D', 'score': 13.21}, {'connected_gene': 'HAPLN2', 'score': 11.21}, {'connected_gene': 'BCAN', 'score': 10.7}, {'connected_gene': 'CCT3', 'score': 10.5}, {'connected_gene': 'C1orf61', 'score': 10.4}, {'connected_gene': 'MIR9-1', 'score': 10.39}, {'connected_gene': 'TSACC', 'score': 10.36}, {'connected_gene': 'SMG5', 'score': 4.59}, {'connected_gene': 'IQGAP3', 'score': 0.37}, {'connected_gene': 'GC01P156524', 'score': 0.31}]
chr1	GH01I156569	156569889	156573198	2.25	[{'connected_gene': 'IQGAP3', 'score': 550.77}, {'connected_gene': 'NAXE', 'score': 19.57}, {'connected_gene': 'GON4L', 'score': 18.91}, {'connected_gene': 'KHDC4', 'score': 13.17}, {'connected_gene': 'RRNAD1', 'score': 12.91}, {'connected_gene': 'YY1AP1', 'score': 12.57}, {'connected_gene': 'MEF2D', 'score': 11.8}, {'connected_gene': 'PRCC', 'score': 10.91}, {'connected_gene': 'BCAN', 'score': 10.74}, {'connected_gene': 'CCT3', 'score': 10.58}, {'connected_gene': 'TSACC', 'score': 10.57}, {'connected_gene': 'LOC246784', 'score': 10.53}, {'connected_gene': 'GPATCH4', 'score': 6.84}, {'connected_gene': 'TTC24', 'score': 6.66}, {'connected_gene': 'GC01P156524', 'score': 0.25}]
chr1	GH01I156527	156527270	156528735	0.38	[{'connected_gene': 'IQGAP3', 'score': 11.24}, {'connected_gene': 'NAXE', 'score': 10.47}, {'connected_gene': 'GC01P156524', 'score': 0.77}]
chr1	GH01I156523	156523752	156526185	1.45	[{'connected_gene': 'GC01P156524', 'score': 550.77}, {'connected_gene': 'NAXE', 'score': 16.95}, {'connected_gene': 'IQGAP3', 'score': 11.23}, {'connected_gene': 'C1orf61', 'score': 10.12}, {'connected_gene': 'MIR9-1', 'score': 10.11}, {'connected_gene': 'GPATCH4', 'score': 4.95}, {'connected_gene': 'ENSG00000260460', 'score': 4.72}, {'connected_gene': 'MEF2D', 'score': 3.89}, {'connected_gene': 'RRNAD1', 'score': 1.29}]
chr1	GH01I156526	156526189	156526398	0.58	[{'connected_gene': 'GC01P156524', 'score': 550.77}, {'connected_gene': 'IQGAP3', 'score': 11.23}, {'connected_gene': 'NAXE', 'score': 10.47}]