PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000409528	[[103353366, 103353472], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103433875]]	[[103380843, 103380886], [103414321, 103414459], [103431206, 103431427]]
ENST00000409173	[[103353369, 103353472], [103374847, 103374932], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103433879]]	[[103374929, 103374932], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103431427]]
ENST00000488134	[[103353404, 103353472], [103379045, 103379145], [103380787, 103380886], [103431206, 103431563]]	None
ENST00000412401	[[103378471, 103378808], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103434125]]	[[103378676, 103378808], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103431427]]
ENST00000486293	[[103379057, 103379145], [103380787, 103380886], [103414321, 103414459], [103459870, 103460352]]	None
ENST00000484094	[[103414224, 103414459], [103431206, 103432775]]	None
ENST00000454536	[[103353366, 103353472], [103373871, 103373998], [103374847, 103374932], [103379045, 103379145], [103380787, 103380886], [103414321, 103414359]]	[[103374929, 103374932], [103379045, 103379145], [103380787, 103380886], [103414321, 103414359]]
ENST00000469971	[[103353390, 103353472], [103379045, 103379145], [103380787, 103380886], [103391588, 103391977]]	None
NM_001321346	[[103353364, 103353472], [103379045, 103379145], [103380787, 103380886], [103431206, 103434138]]	[[103380843, 103380886], [103431206, 103431427]]
NM_001321345	[[103353364, 103353472], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103434138]]	[[103380843, 103380886], [103414321, 103414459], [103431206, 103431427]]
NM_001321344	[[103353364, 103353472], [103374847, 103374932], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103434138]]	[[103374929, 103374932], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103431427]]
NM_001321343	[[103353364, 103353472], [103373871, 103373998], [103374847, 103374932], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103434138]]	[[103374929, 103374932], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103431427]]
NM_144632	[[103378489, 103378808], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103434138]]	[[103378676, 103378808], [103379045, 103379145], [103380787, 103380886], [103414321, 103414459], [103431206, 103431427]]

Promoter

Chrom	Start	End	Description
chr2	103353367	103353400	CAGE_peak_1_at_TMEM182_5end
chr2	103378482	103378496	CAGE_peak_3_at_TMEM182_5end
chr2	103378505	103378521	CAGE_peak_4_at_TMEM182_5end
chr2	103378596	103378599	CAGE_peak_2_at_TMEM182_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I102735	102735397	102737749	1.99	[{'connected_gene': 'MFSD9', 'score': 550.77}, {'connected_gene': 'TMEM182', 'score': 550.77}, {'connected_gene': 'SLC9A2', 'score': 0.13}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102770	102770369	102773994	0.51	[{'connected_gene': 'MFSD9', 'score': 25.88}, {'connected_gene': 'TMEM182', 'score': 0.28}, {'connected_gene': 'LINC01796', 'score': 0.13}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102782	102782769	102784712	0.31	[{'connected_gene': 'MFSD9', 'score': 39.28}, {'connected_gene': 'TMEM182', 'score': 0.25}, {'connected_gene': 'LINC01796', 'score': 0.14}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102808	102808844	102811028	0.43	[{'connected_gene': 'MFSD9', 'score': 38.43}, {'connected_gene': 'TMEM182', 'score': 0.19}, {'connected_gene': 'LINC01796', 'score': 0.17}, {'connected_gene': 'GC02P101903', 'score': 0.02}]
chr2	GH02I102766	102766330	102768534	0.49	[{'connected_gene': 'MFSD9', 'score': 71.94}, {'connected_gene': 'TMEM182', 'score': 0.29}, {'connected_gene': 'LINC01796', 'score': 0.13}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102812	102812777	102816729	0.38	[{'connected_gene': 'MFSD9', 'score': 38.42}, {'connected_gene': 'TMEM182', 'score': 0.18}, {'connected_gene': 'LINC01796', 'score': 0.18}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102787	102787805	102789114	0.54	[{'connected_gene': 'MFSD9', 'score': 17.48}, {'connected_gene': 'TMEM182', 'score': 0.23}, {'connected_gene': 'LINC01796', 'score': 0.14}, {'connected_gene': 'GC02P101903', 'score': 0.02}]
chr2	GH02I102754	102754493	102756082	0.38	[{'connected_gene': 'MFSD9', 'score': 26.0}, {'connected_gene': 'TMEM182', 'score': 0.37}, {'connected_gene': 'LINC01796', 'score': 0.11}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102801	102801460	102803513	1	[{'connected_gene': 'MFSD9', 'score': 17.92}, {'connected_gene': 'TMEM182', 'score': 0.2}, {'connected_gene': 'LINC01796', 'score': 0.16}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102761	102761292	102762977	0.9	[{'connected_gene': 'TMEM182', 'score': 550.31}, {'connected_gene': 'MFSD9', 'score': 58.55}, {'connected_gene': 'LINC01796', 'score': 0.12}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102806	102806201	102806491	1.04	[{'connected_gene': 'TMEM182', 'score': 0.2}, {'connected_gene': 'LINC01796', 'score': 0.17}, {'connected_gene': 'GC02P101903', 'score': 0.02}]
chr2	GH02I102976	102976630	102976863	0.58	[{'connected_gene': 'LINC01935', 'score': 0.44}, {'connected_gene': 'GC02P102943', 'score': 0.29}, {'connected_gene': 'TMEM182', 'score': 0.07}]
chr2	GH02I102827	102827001	102827200	0.94	[{'connected_gene': 'LINC01796', 'score': 0.2}, {'connected_gene': 'TMEM182', 'score': 0.16}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102848	102848360	102849000	0.87	[{'connected_gene': 'LINC01796', 'score': 0.25}, {'connected_gene': 'TMEM182', 'score': 0.14}, {'connected_gene': 'GC02P101903', 'score': 0.02}]
chr2	GH02I102943	102943508	102944514	0.6	[{'connected_gene': 'GC02P102943', 'score': 550.77}, {'connected_gene': 'LINC01935', 'score': 0.26}, {'connected_gene': 'TMEM182', 'score': 0.08}]
chr2	GH02I102921	102921903	102923410	0.8	[{'connected_gene': 'GC02P102943', 'score': 0.34}, {'connected_gene': 'LINC01796', 'score': 0.31}, {'connected_gene': 'TMEM182', 'score': 0.09}]
chr2	GH02I102931	102931968	102933254	0.92	[{'connected_gene': 'GC02P102943', 'score': 0.39}, {'connected_gene': 'LINC01796', 'score': 0.28}, {'connected_gene': 'TMEM182', 'score': 0.08}]