PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000209665	[[100333417, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100356372, 100356667]]	[[100334304, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100356372, 100356426]]
ENST00000437033	[[100333417, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100356372, 100356894]]	[[100334304, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100356372, 100356390]]
ENST00000482593	[[100334162, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100353775, 100353888], [100356372, 100356430]]	[[100334304, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349736]]
ENST00000485660	[[100334170, 100334329], [100336634, 100337031]]	None
ENST00000476959	[[100334194, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100356183, 100356291]]	[[100334304, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100356183, 100356261]]
ENST00000474027	[[100348999, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100351335, 100351448]]	[[100348999, 100349146], [100349243, 100349331], [100349648, 100349736]]
NM_001166504	[[100333417, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100356183, 100356291]]	[[100334304, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100356183, 100356261]]
NM_000673	[[100333417, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100356372, 100356667]]	[[100334304, 100334329], [100336634, 100336773], [100340142, 100340278], [100341689, 100341950], [100348929, 100349146], [100349243, 100349331], [100349648, 100349787], [100350688, 100350790], [100356372, 100356426]]

Promoter

Chrom	Start	End	Description
chr4	100356431	100356446	CAGE_peak_3_at_ADH7_5end
chr4	100356453	100356521	CAGE_peak_1_at_ADH7_5end
chr4	100356522	100356531	CAGE_peak_5_at_ADH7_5end
chr4	100356551	100356570	CAGE_peak_2_at_ADH7_5end
chr4	100356844	100356855	CAGE_peak_4_at_ADH7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I099457	99457189	99460316	0.76	[{'connected_gene': 'TRMT10A', 'score': 4.46}, {'connected_gene': 'LOC100507053', 'score': 4.38}, {'connected_gene': 'ADH7', 'score': 0.34}, {'connected_gene': 'ENSG00000250300', 'score': 0.28}]
chr4	GH04I099446	99446721	99447663	0.88	[{'connected_gene': 'MTTP', 'score': 7.3}, {'connected_gene': 'ADH7', 'score': 0.39}, {'connected_gene': 'ENSG00000250300', 'score': 0.23}]
chr4	GH04I099860	99860583	99860891	0.6	[{'connected_gene': 'DAPP1', 'score': 15.82}, {'connected_gene': 'TRMT10A', 'score': 12.8}, {'connected_gene': 'MTTP', 'score': 10.94}, {'connected_gene': 'LAMTOR3', 'score': 9.88}, {'connected_gene': 'ADH7', 'score': 5.31}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I098994	98994326	98999450	2.24	[{'connected_gene': 'METAP1', 'score': 550.77}, {'connected_gene': 'MIR3684', 'score': 550.77}, {'connected_gene': 'ENSG00000272777', 'score': 27.97}, {'connected_gene': 'LOC100507053', 'score': 20.32}, {'connected_gene': 'EIF4E', 'score': 16.14}, {'connected_gene': 'ADH5', 'score': 11.14}, {'connected_gene': 'RNU7-149P', 'score': 11.02}, {'connected_gene': 'ADH1A', 'score': 4.63}, {'connected_gene': 'ADH4', 'score': 4.5}, {'connected_gene': 'ENSG00000263923', 'score': 0.2}]
chr4	GH04I099147	99147827	99149698	0.38	[{'connected_gene': 'ADH4', 'score': 13.02}, {'connected_gene': 'ADH5', 'score': 12.52}, {'connected_gene': 'ADH6', 'score': 10.44}, {'connected_gene': 'LOC100507053', 'score': 9.68}, {'connected_gene': 'PIR42405', 'score': 0.26}]
chr4	GH04I099143	99143614	99145121	1.3	[{'connected_gene': 'ADH4', 'score': 567.47}, {'connected_gene': 'LOC100507053', 'score': 22.86}, {'connected_gene': 'ADH5', 'score': 12.61}, {'connected_gene': 'ADH1A', 'score': 10.47}, {'connected_gene': 'ADH6', 'score': 9.95}, {'connected_gene': 'PIR42405', 'score': 0.28}]
chr4	GH04I099151	99151648	99151733	0.31	[{'connected_gene': 'ADH4', 'score': 0.44}, {'connected_gene': 'PIR42405', 'score': 0.25}, {'connected_gene': 'LOC100507053', 'score': 0.21}]
chr4	GH04I099157	99157524	99157673	0.93	[{'connected_gene': 'ADH4', 'score': 550.77}, {'connected_gene': 'ENSG00000272777', 'score': 8.47}, {'connected_gene': 'PIR42405', 'score': 0.23}, {'connected_gene': 'LOC100507053', 'score': 0.2}]
chr4	GH04I099463	99463064	99463964	0.63	[{'connected_gene': 'ADH7', 'score': 0.31}, {'connected_gene': 'ENSG00000250300', 'score': 0.28}]
chr4	GH04I099204	99204879	99205977	0.8	[{'connected_gene': 'ADH6', 'score': 12.12}, {'connected_gene': 'PCNAP1', 'score': 11.22}, {'connected_gene': 'ADH4', 'score': 11.21}, {'connected_gene': 'LOC100507053', 'score': 11.09}, {'connected_gene': 'PCNAP2', 'score': 0.26}]
chr4	GH04I099152	99152184	99152333	0.31	[{'connected_gene': 'ADH6', 'score': 11.72}, {'connected_gene': 'ADH4', 'score': 0.44}, {'connected_gene': 'PIR42405', 'score': 0.25}, {'connected_gene': 'LOC100507053', 'score': 0.21}]
chr4	GH04I099180	99180273	99181654	0.31	[{'connected_gene': 'ADH6', 'score': 23.08}, {'connected_gene': 'LOC100507053', 'score': 19.42}, {'connected_gene': 'ADH4', 'score': 11.85}, {'connected_gene': 'ENSG00000272777', 'score': 8.08}, {'connected_gene': 'PCNAP2', 'score': 0.37}]
chr4	GH04I099086	99086027	99092535	2.01	[{'connected_gene': 'ADH5', 'score': 565.37}, {'connected_gene': 'LOC100507053', 'score': 556.57}, {'connected_gene': 'ENSG00000272777', 'score': 35.92}, {'connected_gene': 'ADH4', 'score': 13.65}, {'connected_gene': 'PIR42405', 'score': 0.37}]
chr4	GH04I099351	99351357	99351741	0.34	[{'connected_gene': 'ADH1C', 'score': 566.77}, {'connected_gene': 'ADH1B', 'score': 560.95}, {'connected_gene': 'ADH6', 'score': 24.38}, {'connected_gene': 'ADH1A', 'score': 18.68}, {'connected_gene': 'ADH4', 'score': 16.45}, {'connected_gene': 'PIR40463', 'score': 0.28}]
chr4	GH04I099381	99381054	99381238	0.39	[{'connected_gene': 'ADH1A', 'score': 36.62}, {'connected_gene': 'ADH4', 'score': 34.81}, {'connected_gene': 'ADH1C', 'score': 27.4}, {'connected_gene': 'ADH1B', 'score': 22.22}, {'connected_gene': 'ADH6', 'score': 14.39}, {'connected_gene': 'LOC100507053', 'score': 10.46}, {'connected_gene': 'LOC102723576', 'score': 0.34}]
chr4	GH04I099402	99402671	99406253	1.64	[{'connected_gene': 'LOC102723576', 'score': 550.77}, {'connected_gene': 'ADH4', 'score': 14.36}, {'connected_gene': 'ADH6', 'score': 11.33}, {'connected_gene': 'LOC100507053', 'score': 10.93}, {'connected_gene': 'PCNAP1', 'score': 9.94}, {'connected_gene': 'ADH5', 'score': 8.86}, {'connected_gene': 'ADH1A', 'score': 6.13}, {'connected_gene': 'ADH1B', 'score': 2.8}, {'connected_gene': 'ADH1C', 'score': 2.28}]
chr4	GH04I099408	99408464	99408613	0.46	[{'connected_gene': 'LOC102723576', 'score': 0.77}, {'connected_gene': 'ADH7', 'score': 0.31}]
chr4	GH04I099414	99414544	99414633	0.67	[{'connected_gene': 'LOC102723576', 'score': 0.44}, {'connected_gene': 'ADH7', 'score': 0.34}]
chr4	GH04I099412	99412661	99413853	0.59	[{'connected_gene': 'LOC100507053', 'score': 4.14}, {'connected_gene': 'LOC102723576', 'score': 0.44}, {'connected_gene': 'ADH7', 'score': 0.34}]
chr4	GH04I098585	98585474	98589697	0.2	[{'connected_gene': 'GC04P098586', 'score': 550.77}, {'connected_gene': 'ENSG00000251523', 'score': 10.68}, {'connected_gene': 'RAP1GDS1', 'score': 9.35}, {'connected_gene': 'ENSG00000214559', 'score': 9.35}, {'connected_gene': 'LOC105377342', 'score': 4.43}, {'connected_gene': 'ADH4', 'score': 3.94}, {'connected_gene': 'TSPAN5', 'score': 0.19}]
chr4	GH04I098580	98580217	98580796	0.2	[{'connected_gene': 'ENSG00000251523', 'score': 10.83}, {'connected_gene': 'ADH4', 'score': 3.93}, {'connected_gene': 'GC04P098586', 'score': 0.44}, {'connected_gene': 'GC04P098524', 'score': 0.22}, {'connected_gene': 'TSPAN5', 'score': 0.18}]
chr4	GH04I098544	98544851	98545363	0.2	[{'connected_gene': 'ENSG00000251523', 'score': 10.78}, {'connected_gene': 'ADH4', 'score': 3.93}, {'connected_gene': 'GC04P098524', 'score': 0.34}, {'connected_gene': 'GC04P098586', 'score': 0.26}, {'connected_gene': 'TSPAN5', 'score': 0.14}]
chr4	GH04I098545	98544258	98544683	0.2	[{'connected_gene': 'ENSG00000251523', 'score': 10.72}, {'connected_gene': 'ADH4', 'score': 3.93}, {'connected_gene': 'GC04P098524', 'score': 0.37}, {'connected_gene': 'GC04P098586', 'score': 0.26}, {'connected_gene': 'TSPAN5', 'score': 0.14}]