PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000287777	[[42727010, 42728262], [42729633, 42729794], [42730101, 42730209], [42730360, 42730546], [42732350, 42732497], [42733373, 42734036]]	[[42727110, 42728262], [42729633, 42729794], [42730101, 42730209], [42730360, 42730546], [42732350, 42732497], [42733373, 42733485]]
NM_152393	[[42727010, 42728262], [42729633, 42729794], [42730101, 42730209], [42730360, 42730546], [42732350, 42732497], [42733373, 42733938]]	[[42727110, 42728262], [42729633, 42729794], [42730101, 42730209], [42730360, 42730546], [42732350, 42732497], [42733373, 42733485]]

Promoter

Chrom	Start	End	Description
chr3	42727027	42727034	CAGE_peak_1_at_KBTBD5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I042695	42695270	42695864	0.47	[{'connected_gene': 'HHATL', 'score': 19.42}, {'connected_gene': 'CCDC13-AS1', 'score': 17.79}, {'connected_gene': 'CCDC13', 'score': 10.25}, {'connected_gene': 'FAM198A', 'score': 2.98}, {'connected_gene': 'ZNF662', 'score': 2.54}, {'connected_gene': 'KLHL40', 'score': 1.92}, {'connected_gene': 'HHATL-AS1', 'score': 0.44}]
chr3	GH03I042700	42700958	42703464	1.77	[{'connected_gene': 'HHATL', 'score': 559.4}, {'connected_gene': 'HHATL-AS1', 'score': 550.77}, {'connected_gene': 'NKTR', 'score': 19.79}, {'connected_gene': 'ZNF662', 'score': 16.59}, {'connected_gene': 'SNRK-AS1', 'score': 10.47}, {'connected_gene': 'KLHL40', 'score': 0.37}, {'connected_gene': 'CCDC13', 'score': 0.19}]
chr3	GH03I042689	42689916	42694645	0.38	[{'connected_gene': 'CCDC13', 'score': 21.25}, {'connected_gene': 'CCDC13-AS1', 'score': 18.17}, {'connected_gene': 'HHATL', 'score': 7.18}, {'connected_gene': 'NKTR', 'score': 5.22}, {'connected_gene': 'HIGD1A', 'score': 4.45}, {'connected_gene': 'KLHL40', 'score': 0.44}, {'connected_gene': 'HHATL-AS1', 'score': 0.39}]
chr3	GH03I042682	42682661	42687616	1.98	[{'connected_gene': 'KLHL40', 'score': 550.77}, {'connected_gene': 'SEC22C', 'score': 24.82}, {'connected_gene': 'HHATL', 'score': 7.0}, {'connected_gene': 'LYZL4', 'score': 6.86}, {'connected_gene': 'NKTR', 'score': 6.61}, {'connected_gene': 'CCDC13', 'score': 5.45}, {'connected_gene': 'CCK', 'score': 4.28}, {'connected_gene': 'KRBOX1', 'score': 3.4}, {'connected_gene': 'RN7SL567P', 'score': 0.44}]