PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000383763	[[32859509, 32860424], [32915309, 32915477], [32927425, 32927560], [32931851, 32939318]]	[[32859572, 32860424], [32915309, 32915477], [32927425, 32927560], [32931851, 32933303]]
NM_001039111	[[32859509, 32860424], [32915309, 32915477], [32927425, 32927560], [32931851, 32939318]]	[[32859572, 32860424], [32915309, 32915477], [32927425, 32927560], [32931851, 32933303]]

Promoter

Chrom	Start	End	Description
chr3	32859521	32859546	CAGE_peak_1_at_TRIM71_5end
chr3	32859593	32859606	CAGE_peak_3_at_TRIM71_5end
chr3	32859762	32859795	CAGE_peak_2_at_TRIM71_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I032888	32888432	32888466	0.23	[{'connected_gene': 'SUGT1P2', 'score': 11.45}, {'connected_gene': 'CNOT10-AS1', 'score': 11.43}, {'connected_gene': 'CNOT10', 'score': 11.41}, {'connected_gene': 'TRIM71', 'score': 10.99}, {'connected_gene': 'CMTM6', 'score': 9.6}, {'connected_gene': 'RPL31P18', 'score': 9.59}, {'connected_gene': 'PIR42638', 'score': 0.77}, {'connected_gene': 'PIR32571', 'score': 0.39}, {'connected_gene': 'GC03M032797', 'score': 0.37}]
chr3	GH03I032963	32963911	32964290	0.58	[{'connected_gene': 'TMPPE', 'score': 10.43}, {'connected_gene': 'GLB1', 'score': 10.43}, {'connected_gene': 'TRIM71', 'score': 9.75}, {'connected_gene': 'CCR4', 'score': 4.01}, {'connected_gene': 'LOC105377022', 'score': 0.39}]
chr3	GH03I032794	32794166	32795543	0.84	[{'connected_gene': 'DYNC1LI1', 'score': 14.47}, {'connected_gene': 'TRIM71', 'score': 12.91}, {'connected_gene': 'SUGT1P2', 'score': 11.56}, {'connected_gene': 'CNOT10-AS1', 'score': 11.52}, {'connected_gene': 'CNOT10', 'score': 11.44}, {'connected_gene': 'RPL23AP43', 'score': 0.39}, {'connected_gene': 'GC03P032812', 'score': 0.37}]
chr3	GH03I032778	32778777	32782884	1.66	[{'connected_gene': 'RPL23AP43', 'score': 550.77}, {'connected_gene': 'TRIM71', 'score': 13.39}, {'connected_gene': 'SUGT1P2', 'score': 11.87}, {'connected_gene': 'CNOT10-AS1', 'score': 11.82}, {'connected_gene': 'CNOT10', 'score': 11.71}]
chr3	GH03I032832	32832968	32833621	0.96	[{'connected_gene': 'CNOT10', 'score': 53.96}, {'connected_gene': 'UBP1', 'score': 39.88}, {'connected_gene': 'PDCD6IP', 'score': 38.97}, {'connected_gene': 'FBXL2', 'score': 12.45}, {'connected_gene': 'TMPPE', 'score': 11.79}, {'connected_gene': 'GLB1', 'score': 10.3}, {'connected_gene': 'TRIM71', 'score': 0.37}, {'connected_gene': 'PIR32571', 'score': 0.26}, {'connected_gene': 'GC03M032797', 'score': 0.19}]
chr3	GH03I032684	32684049	32687361	2.06	[{'connected_gene': 'CNOT10', 'score': 575.49}, {'connected_gene': 'GLB1', 'score': 24.72}, {'connected_gene': 'TMPPE', 'score': 20.47}, {'connected_gene': 'UBP1', 'score': 11.03}, {'connected_gene': 'DYNC1LI1', 'score': 10.26}, {'connected_gene': 'RPL31P18', 'score': 10.15}, {'connected_gene': 'CMTM6', 'score': 10.15}, {'connected_gene': 'ENSG00000236732', 'score': 9.94}, {'connected_gene': 'TRIM71', 'score': 9.5}, {'connected_gene': 'PIR58788', 'score': 0.37}]
chr3	GH03I032695	32695492	32695551	0.61	[{'connected_gene': 'CNOT10', 'score': 550.39}, {'connected_gene': 'CNOT10-AS1', 'score': 10.64}, {'connected_gene': 'SUGT1P2', 'score': 10.6}, {'connected_gene': 'RPL31P18', 'score': 10.35}, {'connected_gene': 'CMTM6', 'score': 10.35}, {'connected_gene': 'TRIM71', 'score': 9.73}, {'connected_gene': 'PIR58788', 'score': 0.44}]
chr3	GH03I032708	32708809	32709639	0.92	[{'connected_gene': 'CNOT10', 'score': 11.53}, {'connected_gene': 'CNOT10-AS1', 'score': 11.5}, {'connected_gene': 'SUGT1P2', 'score': 11.45}, {'connected_gene': 'TRIM71', 'score': 10.34}, {'connected_gene': 'RPL31P18', 'score': 10.0}, {'connected_gene': 'CMTM6', 'score': 10.0}, {'connected_gene': 'TMPPE', 'score': 5.26}, {'connected_gene': 'PIR58788', 'score': 0.77}]
chr3	GH03I032835	32835123	32845554	1.32	[{'connected_gene': 'TRIM71', 'score': 12.84}, {'connected_gene': 'SUGT1P2', 'score': 10.74}, {'connected_gene': 'CNOT10-AS1', 'score': 10.72}, {'connected_gene': 'CNOT10', 'score': 10.68}, {'connected_gene': 'DYNC1LI1', 'score': 9.52}, {'connected_gene': 'PIR32571', 'score': 0.29}, {'connected_gene': 'GC03M032797', 'score': 0.21}]
chr3	GH03I032859	32859537	32860498	0.31	[{'connected_gene': 'TRIM71', 'score': 11.85}, {'connected_gene': 'SUGT1P2', 'score': 11.29}, {'connected_gene': 'CNOT10-AS1', 'score': 11.27}, {'connected_gene': 'CNOT10', 'score': 11.24}, {'connected_gene': 'DYNC1LI1', 'score': 8.99}, {'connected_gene': 'PIR32571', 'score': 0.37}, {'connected_gene': 'GC03M032797', 'score': 0.26}]
chr3	GH03I032884	32884229	32885312	0.38	[{'connected_gene': 'TRIM71', 'score': 11.78}, {'connected_gene': 'SUGT1P2', 'score': 11.07}, {'connected_gene': 'CNOT10-AS1', 'score': 11.07}, {'connected_gene': 'CNOT10', 'score': 11.04}, {'connected_gene': 'RPL31P18', 'score': 9.03}, {'connected_gene': 'CMTM6', 'score': 9.03}, {'connected_gene': 'PIR42638', 'score': 0.44}, {'connected_gene': 'PIR32571', 'score': 0.44}, {'connected_gene': 'GC03M032797', 'score': 0.37}]
chr3	GH03I032863	32863969	32871941	0.91	[{'connected_gene': 'TRIM71', 'score': 11.99}, {'connected_gene': 'SUGT1P2', 'score': 10.8}, {'connected_gene': 'CNOT10-AS1', 'score': 10.79}, {'connected_gene': 'CNOT10', 'score': 10.76}, {'connected_gene': 'PIR32571', 'score': 0.44}, {'connected_gene': 'GC03M032797', 'score': 0.28}]
chr3	GH03I032856	32856308	32857300	0.83	[{'connected_gene': 'TRIM71', 'score': 11.76}, {'connected_gene': 'GLB1', 'score': 9.99}, {'connected_gene': 'TMPPE', 'score': 9.99}, {'connected_gene': 'PIR32571', 'score': 0.37}, {'connected_gene': 'GC03M032797', 'score': 0.25}]
chr3	GH03I032847	32847331	32852665	0.87	[{'connected_gene': 'TRIM71', 'score': 12.52}, {'connected_gene': 'CNOT10', 'score': 11.11}, {'connected_gene': 'PDCD6IP', 'score': 10.46}, {'connected_gene': 'TMPPE', 'score': 9.99}, {'connected_gene': 'GLB1', 'score': 9.99}, {'connected_gene': 'PIR32571', 'score': 0.31}, {'connected_gene': 'GC03M032797', 'score': 0.23}]
chr3	GH03I032814	32814052	32823400	2.28	[{'connected_gene': 'TRIM71', 'score': 550.77}, {'connected_gene': 'LOC105377021', 'score': 550.77}, {'connected_gene': 'PIR32571', 'score': 0.22}, {'connected_gene': 'GC03M032797', 'score': 0.17}]
chr3	GH03I032824	32824183	32825109	0.31	[{'connected_gene': 'TRIM71', 'score': 0.44}, {'connected_gene': 'PIR32571', 'score': 0.23}, {'connected_gene': 'GC03M032797', 'score': 0.18}]
chr3	GH03I032875	32875525	32876334	0.68	[{'connected_gene': 'PIR32571', 'score': 550.77}, {'connected_gene': 'PIR42638', 'score': 0.39}, {'connected_gene': 'GC03M032797', 'score': 0.31}, {'connected_gene': 'TRIM71', 'score': 0.22}]
chr3	GH03I032872	32872230	32874000	0.89	[{'connected_gene': 'PIR32571', 'score': 0.77}, {'connected_gene': 'GC03M032797', 'score': 0.29}, {'connected_gene': 'TRIM71', 'score': 0.22}]
chr3	GH03I032703	32703229	32704051	0.87	[{'connected_gene': 'PIR58788', 'score': 550.77}, {'connected_gene': 'CNOT10-AS1', 'score': 11.66}, {'connected_gene': 'SUGT1P2', 'score': 11.62}, {'connected_gene': 'TRIM71', 'score': 10.03}, {'connected_gene': 'GLB1', 'score': 4.15}, {'connected_gene': 'CNOT10', 'score': 0.37}]