PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000258424	[[98262502, 98262652], [98263529, 98263603], [98263806, 98263906], [98264458, 98264846]]	[[98262549, 98262652], [98263529, 98263603], [98263806, 98263906], [98264458, 98264571]]
ENST00000464949	[[98262559, 98262652], [98262979, 98263129], [98263529, 98263603], [98263806, 98263906], [98264458, 98264654]]	None
ENST00000491989	[[98262751, 98262854], [98262979, 98263129], [98263529, 98263603], [98263806, 98263906], [98264458, 98264642]]	None
ENST00000494306	[[98262903, 98263603], [98263806, 98263844]]	None
NM_001862	[[98262520, 98262652], [98263529, 98263603], [98263806, 98263906], [98264458, 98264657]]	[[98262549, 98262652], [98263529, 98263603], [98263806, 98263906], [98264458, 98264571]]

Promoter

Chrom	Start	End	Description
chr2	98262497	98262549	CAGE_peak_1_at_COX5B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I097712	97712403	97720047	2.07	[{'connected_gene': 'ZAP70', 'score': 588.02}, {'connected_gene': 'ANKRD36B', 'score': 24.23}, {'connected_gene': 'LMAN2L', 'score': 16.66}, {'connected_gene': 'UNC50', 'score': 15.92}, {'connected_gene': 'ACTR1B', 'score': 14.15}, {'connected_gene': 'ANKRD36', 'score': 13.08}, {'connected_gene': 'CNNM3', 'score': 11.55}, {'connected_gene': 'SEMA4C', 'score': 10.54}, {'connected_gene': 'TMEM131', 'score': 9.76}, {'connected_gene': 'FAHD2B', 'score': 7.66}, {'connected_gene': 'C2orf92', 'score': 6.92}, {'connected_gene': 'COX5B', 'score': 4.93}, {'connected_gene': 'ENSG00000235833', 'score': 4.09}, {'connected_gene': 'HMGN1P36', 'score': 0.14}]
chr2	GH02I097723	97723874	97723933	0.7	[{'connected_gene': 'ZAP70', 'score': 550.39}, {'connected_gene': 'ANKRD36B', 'score': 13.32}, {'connected_gene': 'COX5B', 'score': 10.99}, {'connected_gene': 'RNU4-8P', 'score': 10.64}, {'connected_gene': 'ACTR1B', 'score': 10.64}, {'connected_gene': 'C2orf92', 'score': 10.64}, {'connected_gene': 'HMGN1P36', 'score': 0.15}]
chr2	GH02I097730	97730139	97732728	0.31	[{'connected_gene': 'C2orf92', 'score': 17.05}, {'connected_gene': 'RNU4-8P', 'score': 10.83}, {'connected_gene': 'ACTR1B', 'score': 10.83}, {'connected_gene': 'COX5B', 'score': 10.52}, {'connected_gene': 'ZAP70', 'score': 0.37}, {'connected_gene': 'HMGN1P36', 'score': 0.15}]
chr2	GH02I097588	97588600	97591567	1.97	[{'connected_gene': 'ANKRD36B', 'score': 597.48}, {'connected_gene': 'COX5B', 'score': 12.25}, {'connected_gene': 'RNU4-8P', 'score': 12.07}, {'connected_gene': 'ACTR1B', 'score': 12.07}, {'connected_gene': 'C2orf92', 'score': 12.07}, {'connected_gene': 'ZAP70', 'score': 12.0}, {'connected_gene': 'PIR49158', 'score': 0.44}]
chr2	GH02I098451	98451975	98462212	1.59	[{'connected_gene': 'INPP4A', 'score': 16.92}, {'connected_gene': 'MGAT4A', 'score': 9.34}, {'connected_gene': 'LOC101927070', 'score': 5.14}, {'connected_gene': 'COX5B', 'score': 4.02}, {'connected_gene': 'TMEM131', 'score': 2.8}, {'connected_gene': 'PIR47012', 'score': 0.29}]
chr2	GH02I096947	96947240	96948641	0.56	[{'connected_gene': 'FAHD2B', 'score': 12.51}, {'connected_gene': 'GPAT2P2', 'score': 5.42}, {'connected_gene': 'COX5B', 'score': 3.85}, {'connected_gene': 'RNA5SP101', 'score': 0.44}, {'connected_gene': 'ENSG00000274206', 'score': 0.44}, {'connected_gene': 'FAM178B', 'score': 0.28}]
chr2	GH02I097720	97720666	97721462	0.4	[{'connected_gene': 'COX5B', 'score': 10.87}, {'connected_gene': 'RNU4-8P', 'score': 10.6}, {'connected_gene': 'ACTR1B', 'score': 10.6}, {'connected_gene': 'C2orf92', 'score': 10.6}, {'connected_gene': 'ZAP70', 'score': 0.44}, {'connected_gene': 'HMGN1P36', 'score': 0.14}]
chr2	GH02I097644	97644775	97647542	2.22	[{'connected_gene': 'COX5B', 'score': 550.77}, {'connected_gene': 'PIR38581', 'score': 550.77}, {'connected_gene': 'ACTR1B', 'score': 31.82}, {'connected_gene': 'TMEM131', 'score': 20.32}, {'connected_gene': 'UNC50', 'score': 9.75}, {'connected_gene': 'LOC100506123', 'score': 7.8}, {'connected_gene': 'ANKRD36', 'score': 5.49}, {'connected_gene': 'C2orf92', 'score': 5.4}]
chr2	GH02I097725	97725336	97728887	1.08	[{'connected_gene': 'ACTR1B', 'score': 19.98}, {'connected_gene': 'C2orf92', 'score': 16.63}, {'connected_gene': 'COX5B', 'score': 10.99}, {'connected_gene': 'RNU4-8P', 'score': 10.83}, {'connected_gene': 'ANKRD36B', 'score': 9.52}, {'connected_gene': 'LOC100506123', 'score': 5.08}, {'connected_gene': 'ZAP70', 'score': 0.39}, {'connected_gene': 'HMGN1P36', 'score': 0.15}]
chr2	GH02I097673	97673121	97674379	1.26	[{'connected_gene': 'PIR32897', 'score': 550.77}, {'connected_gene': 'ANKRD36B', 'score': 33.25}, {'connected_gene': 'COX5B', 'score': 12.56}, {'connected_gene': 'ZAP70', 'score': 11.99}, {'connected_gene': 'FAHD2B', 'score': 7.47}, {'connected_gene': 'TMEM131', 'score': 2.2}, {'connected_gene': 'RNU4-8P', 'score': 0.44}, {'connected_gene': 'C2orf92', 'score': 0.44}]
chr2	GH02I097675	97675838	97675987	0.2	[{'connected_gene': 'PIR53529', 'score': 550.77}, {'connected_gene': 'PIR32897', 'score': 550.77}, {'connected_gene': 'COX5B', 'score': 12.38}, {'connected_gene': 'ZAP70', 'score': 11.99}, {'connected_gene': 'C2orf92', 'score': 0.39}]