PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000278175	[[10326226, 10326776], [10327226, 10327345], [10327495, 10327645], [10327878, 10328944]]	[[10327247, 10327345], [10327495, 10327645], [10327878, 10328188]]
ENST00000534464	[[10326619, 10326776], [10327226, 10327645], [10327878, 10328942]]	[[10327538, 10327645], [10327878, 10328188]]
ENST00000530439	[[10326620, 10326776], [10327226, 10328909]]	[[10327834, 10328188]]
ENST00000524948	[[10326623, 10326776], [10327226, 10327345], [10327495, 10327807]]	[[10327247, 10327345], [10327495, 10327649]]
ENST00000528655	[[10326630, 10327345], [10327495, 10327645], [10327878, 10328902]]	[[10327247, 10327345], [10327495, 10327645], [10327878, 10328188]]
ENST00000526492	[[10326634, 10326776], [10327226, 10327345], [10327495, 10327645], [10327847, 10328077]]	[[10327247, 10327345], [10327495, 10327645], [10327847, 10328019]]
ENST00000525063	[[10326634, 10326776], [10327226, 10327345], [10327495, 10327645], [10327878, 10328195], [10328316, 10328455]]	[[10327247, 10327345], [10327495, 10327645], [10327878, 10328188]]
ENST00000528544	[[10326923, 10327345], [10327495, 10327659]]	[[10327247, 10327345], [10327495, 10327649]]
NM_001124	[[10326526, 10326776], [10327226, 10327345], [10327495, 10327645], [10327878, 10328949]]	[[10327247, 10327345], [10327495, 10327645], [10327878, 10328188]]

Promoter

Chrom	Start	End	Description
chr11	10326612	10326630	CAGE_peak_1_at_ADM_5end
chr11	10326862	10326874	CAGE_peak_7_at_ADM_5end
chr11	10326893	10326913	CAGE_peak_6_at_ADM_5end
chr11	10326918	10326933	CAGE_peak_3_at_ADM_5end
chr11	10327173	10327182	CAGE_peak_15_at_ADM_5end
chr11	10327296	10327313	CAGE_peak_10_at_ADM_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I010207	10207954	10208103	0.57	[{'connected_gene': 'SBF2', 'score': 11.99}, {'connected_gene': 'LOC105376544', 'score': 11.94}, {'connected_gene': 'ADM', 'score': 11.94}, {'connected_gene': 'AMPD3', 'score': 11.94}, {'connected_gene': 'ENSG00000254865', 'score': 10.89}, {'connected_gene': 'GC11M010233', 'score': 0.31}]
chr11	GH11I009903	9903615	9909113	1.43	[{'connected_gene': 'SBF2', 'score': 16.84}, {'connected_gene': 'LOC101928008', 'score': 9.69}, {'connected_gene': 'ENSG00000250041', 'score': 5.29}, {'connected_gene': 'LOC105376544', 'score': 5.12}, {'connected_gene': 'SWAP70', 'score': 4.49}, {'connected_gene': 'ENSG00000238387', 'score': 4.05}, {'connected_gene': 'ADM', 'score': 3.74}, {'connected_gene': 'ENSG00000254765', 'score': 0.23}, {'connected_gene': 'RNU7-28P', 'score': 0.21}]
chr11	GH11I009526	9526804	9528452	0.87	[{'connected_gene': 'ZNF143', 'score': 15.52}, {'connected_gene': 'WEE1', 'score': 12.21}, {'connected_gene': 'ENSG00000238387', 'score': 12.19}, {'connected_gene': 'DENND5A', 'score': 10.01}, {'connected_gene': 'ADM', 'score': 5.7}, {'connected_gene': 'PIR40365', 'score': 0.31}, {'connected_gene': 'LOC644656', 'score': 0.2}, {'connected_gene': 'GC11P009430', 'score': 0.15}]
chr11	GH11I010366	10366073	10367747	1.66	[{'connected_gene': 'ZBED5', 'score': 30.94}, {'connected_gene': 'CTR9', 'score': 21.79}, {'connected_gene': 'RPL21P97', 'score': 21.58}, {'connected_gene': 'WEE1', 'score': 12.85}, {'connected_gene': 'ADM', 'score': 12.37}, {'connected_gene': 'AMPD3', 'score': 10.84}, {'connected_gene': 'LOC105376544', 'score': 10.83}, {'connected_gene': 'ENSG00000238387', 'score': 10.66}, {'connected_gene': 'EIF4G2', 'score': 9.8}, {'connected_gene': 'RNU6ATAC33P', 'score': 0.29}, {'connected_gene': 'GC11M010399', 'score': 0.29}, {'connected_gene': 'PIR60970', 'score': 0.26}, {'connected_gene': 'CAND1.11', 'score': 0.22}]
chr11	GH11I010413	10413320	10415813	1.12	[{'connected_gene': 'AMPD3', 'score': 42.43}, {'connected_gene': 'CTR9', 'score': 11.01}, {'connected_gene': 'MRVI1-AS1', 'score': 10.58}, {'connected_gene': 'RNF141', 'score': 10.58}, {'connected_gene': 'LYVE1', 'score': 10.27}, {'connected_gene': 'MRVI1', 'score': 9.8}, {'connected_gene': 'SBF2', 'score': 2.66}, {'connected_gene': 'EIF4G2', 'score': 2.53}, {'connected_gene': 'ZBED5', 'score': 1.88}, {'connected_gene': 'ADM', 'score': 1.7}, {'connected_gene': 'GC11P010430', 'score': 0.37}, {'connected_gene': 'RNU6ATAC33P', 'score': 0.37}, {'connected_gene': 'GC11M010399', 'score': 0.37}, {'connected_gene': 'CAND1.11', 'score': 0.14}]
chr11	GH11I010435	10435801	10437164	1.01	[{'connected_gene': 'AMPD3', 'score': 24.83}, {'connected_gene': 'LYVE1', 'score': 10.48}, {'connected_gene': 'SBF2', 'score': 3.02}, {'connected_gene': 'EIF4G2', 'score': 1.5}, {'connected_gene': 'ZBED5', 'score': 1.46}, {'connected_gene': 'ADM', 'score': 1.43}, {'connected_gene': 'GC11P010430', 'score': 0.44}, {'connected_gene': 'GC11M010466', 'score': 0.29}]
chr11	GH11I010371	10371237	10374107	0.43	[{'connected_gene': 'AMPD3', 'score': 15.73}, {'connected_gene': 'LOC105376544', 'score': 10.82}, {'connected_gene': 'ADM', 'score': 10.82}, {'connected_gene': 'MTRNR2L8', 'score': 10.45}, {'connected_gene': 'LYVE1', 'score': 10.22}, {'connected_gene': 'MRVI1', 'score': 9.82}, {'connected_gene': 'RNU6ATAC33P', 'score': 0.31}, {'connected_gene': 'GC11M010399', 'score': 0.31}, {'connected_gene': 'PIR60970', 'score': 0.25}, {'connected_gene': 'CAND1.11', 'score': 0.21}]
chr11	GH11I010374	10374437	10376725	0.69	[{'connected_gene': 'LYVE1', 'score': 14.74}, {'connected_gene': 'SBF2', 'score': 10.34}, {'connected_gene': 'MRVI1', 'score': 9.83}, {'connected_gene': 'AMPD3', 'score': 6.22}, {'connected_gene': 'ADM', 'score': 3.2}, {'connected_gene': 'RNU6ATAC33P', 'score': 0.34}, {'connected_gene': 'GC11M010399', 'score': 0.34}, {'connected_gene': 'PIR60970', 'score': 0.23}, {'connected_gene': 'CAND1.11', 'score': 0.2}]
chr11	GH11I010348	10348442	10356023	2.05	[{'connected_gene': 'LYVE1', 'score': 13.57}, {'connected_gene': 'MRVI1', 'score': 9.64}, {'connected_gene': 'SBF2', 'score': 5.68}, {'connected_gene': 'ADM', 'score': 2.35}, {'connected_gene': 'EIF4G2', 'score': 2.19}, {'connected_gene': 'AMPD3', 'score': 1.74}, {'connected_gene': 'PIR60970', 'score': 0.31}, {'connected_gene': 'CAND1.11', 'score': 0.26}, {'connected_gene': 'RNU6ATAC33P', 'score': 0.25}, {'connected_gene': 'GC11M010399', 'score': 0.25}]
chr11	GH11I010208	10208154	10208323	0.62	[{'connected_gene': 'LOC105376544', 'score': 23.75}, {'connected_gene': 'SBF2', 'score': 11.99}, {'connected_gene': 'ADM', 'score': 11.94}, {'connected_gene': 'AMPD3', 'score': 11.94}, {'connected_gene': 'ENSG00000254865', 'score': 10.89}, {'connected_gene': 'GC11M010233', 'score': 0.31}]
chr11	GH11I010297	10297974	10299082	0.85	[{'connected_gene': 'LOC105376544', 'score': 12.81}, {'connected_gene': 'SBF2', 'score': 6.54}, {'connected_gene': 'ADM', 'score': 0.44}]
chr11	GH11I010181	10181914	10182043	0.54	[{'connected_gene': 'LOC105376544', 'score': 17.54}, {'connected_gene': 'AMPD3', 'score': 12.14}, {'connected_gene': 'ADM', 'score': 12.14}, {'connected_gene': 'SBF2', 'score': 10.87}, {'connected_gene': 'ENSG00000254865', 'score': 0.29}, {'connected_gene': 'GC11M010233', 'score': 0.23}]
chr11	GH11I010300	10300806	10310914	2.31	[{'connected_gene': 'LOC105376544', 'score': 563.74}, {'connected_gene': 'GC11M010302', 'score': 550.77}, {'connected_gene': 'ADM', 'score': 550.77}, {'connected_gene': 'ZBED5', 'score': 14.86}, {'connected_gene': 'CTR9', 'score': 12.55}, {'connected_gene': 'ZNF143', 'score': 11.35}, {'connected_gene': 'SBF2', 'score': 6.17}, {'connected_gene': 'CAND1.11', 'score': 0.77}, {'connected_gene': 'AMPD3', 'score': 0.77}]
chr11	GH11I010382	10382614	10382842	0.68	[{'connected_gene': 'MRVI1', 'score': 9.74}, {'connected_gene': 'AMPD3', 'score': 5.29}, {'connected_gene': 'ADM', 'score': 1.52}, {'connected_gene': 'GC11M010399', 'score': 0.37}, {'connected_gene': 'RNU6ATAC33P', 'score': 0.37}, {'connected_gene': 'PIR60970', 'score': 0.22}, {'connected_gene': 'CAND1.11', 'score': 0.19}]
chr11	GH11I010651	10651801	10661720	2.15	[{'connected_gene': 'MRVI1', 'score': 563.53}, {'connected_gene': 'LYVE1', 'score': 12.22}, {'connected_gene': 'CTR9', 'score': 11.84}, {'connected_gene': 'MTRNR2L8', 'score': 10.58}, {'connected_gene': 'MRVI1-AS1', 'score': 7.06}, {'connected_gene': 'ADM', 'score': 2.74}, {'connected_gene': 'GC11M010667', 'score': 0.39}, {'connected_gene': 'GC11M010630', 'score': 0.09}]
chr11	GH11I009981	9981801	9984019	1.25	[{'connected_gene': 'ENSG00000254865', 'score': 10.53}, {'connected_gene': 'SBF2', 'score': 10.41}, {'connected_gene': 'LOC101928008', 'score': 10.24}, {'connected_gene': 'ADM', 'score': 2.31}, {'connected_gene': 'GLULP2', 'score': 0.34}]
chr11	GH11I010233	10233174	10234341	0.89	[{'connected_gene': 'GC11M010233', 'score': 550.77}, {'connected_gene': 'LOC105376544', 'score': 22.43}, {'connected_gene': 'SBF2', 'score': 16.55}, {'connected_gene': 'AMPD3', 'score': 11.93}, {'connected_gene': 'ADM', 'score': 11.93}, {'connected_gene': 'ENSG00000250041', 'score': 4.36}, {'connected_gene': 'ENSG00000254865', 'score': 0.18}]
chr11	GH11I010319	10319238	10330521	1.63	[{'connected_gene': 'PIR60970', 'score': 550.77}, {'connected_gene': 'LOC105376544', 'score': 18.31}, {'connected_gene': 'SBF2', 'score': 17.25}, {'connected_gene': 'ADM', 'score': 12.68}, {'connected_gene': 'ENSG00000254865', 'score': 10.8}, {'connected_gene': 'MRVI1', 'score': 9.47}, {'connected_gene': 'LYVE1', 'score': 9.23}, {'connected_gene': 'ENSG00000250041', 'score': 5.07}, {'connected_gene': 'CAND1.11', 'score': 0.37}, {'connected_gene': 'AMPD3', 'score': 0.37}]