PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000506729	[[101707485, 101707827], [101709040, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101813379, 101813565], [101815880, 101816138], [101834190, 101834720]]	[[101709055, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101813379, 101813565], [101815880, 101816138], [101834190, 101834548]]
ENST00000514765	[[101707648, 101707775], [101709040, 101709198], [101724391, 101724529], [101726684, 101726933]]	None
ENST00000379807	[[101707648, 101707775], [101709040, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101813379, 101813565], [101815880, 101816138], [101834190, 101834683]]	[[101709055, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101813379, 101813565], [101815880, 101816138], [101834190, 101834548]]
ENST00000389019	[[101707648, 101707827], [101709040, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101815880, 101816138], [101834190, 101834720]]	[[101709055, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101815880, 101816138], [101834190, 101834548]]
ENST00000513675	[[101707649, 101707775], [101709040, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101811400, 101811497], [101815880, 101816138], [101834190, 101834617]]	[[101709055, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101811400, 101811497], [101815880, 101816138], [101834190, 101834548]]
ENST00000379810	[[101707653, 101707827], [101709040, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101811400, 101811497], [101815880, 101816138], [101834190, 101834720]]	[[101709055, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101811400, 101811497], [101815880, 101816138], [101834190, 101834548]]
ENST00000511588	[[101707491, 101707830], [101709040, 101709133]]	[[101709055, 101709133]]
ENST00000514551	[[101755626, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101816048, 101816138], [101834190, 101834354]]	None
ENST00000505739	[[101774244, 101774465], [101794085, 101794195], [101811400, 101811497], [101813379, 101813401]]	None
ENST00000505407	[[101811425, 101811497], [101813379, 101813394], [101815880, 101816138], [101834190, 101834514]]	None
NM_173488	[[101707485, 101707827], [101709040, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101813379, 101813565], [101815880, 101816138], [101834190, 101834720]]	[[101709055, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101813379, 101813565], [101815880, 101816138], [101834190, 101834548]]
NM_001289002	[[101707485, 101707775], [101709040, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101813379, 101813565], [101815880, 101816138], [101834190, 101834720]]	[[101709055, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101813379, 101813565], [101815880, 101816138], [101834190, 101834548]]
NM_001289004	[[101707485, 101707827], [101709040, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101815880, 101816138], [101834190, 101834720]]	[[101709055, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101755529, 101755725], [101774320, 101774465], [101794085, 101794195], [101795359, 101795481], [101811400, 101811497], [101815880, 101816138], [101834190, 101834548]]
NM_001308014	[[101707485, 101707775], [101709040, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101811400, 101811497], [101815880, 101816138], [101834190, 101834720]]	[[101709055, 101709198], [101724391, 101724529], [101726684, 101726749], [101735258, 101735446], [101748693, 101748847], [101811400, 101811497], [101815880, 101816138], [101834190, 101834548]]

Promoter

Chrom	Start	End	Description
chr5	101834686	101834710	CAGE_peak_1_at_SLCO6A1_5end
chr5	101834712	101834736	CAGE_peak_2_at_SLCO6A1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I102295	102294985	102297460	1.99	[{'connected_gene': 'SLCO4C1', 'score': 558.34}, {'connected_gene': 'PAM', 'score': 6.19}, {'connected_gene': 'SLCO6A1', 'score': 5.92}, {'connected_gene': 'GC05P102158', 'score': 0.12}]
chr5	GH05I102523	102523401	102523800	0.49	[{'connected_gene': 'SLCO6A1', 'score': 16.94}, {'connected_gene': 'ENSG00000249017', 'score': 11.58}, {'connected_gene': 'SLCO4C1', 'score': 6.02}, {'connected_gene': 'LINC00492', 'score': 0.22}]
chr5	GH05I102242	102242012	102242111	0.45	[{'connected_gene': 'SLCO6A1', 'score': 5.48}, {'connected_gene': 'SLCO4C1', 'score': 0.23}, {'connected_gene': 'GC05P102158', 'score': 0.18}]
chr5	GH05I102528	102528478	102530323	0.2	[{'connected_gene': 'SLCO6A1', 'score': 17.12}, {'connected_gene': 'ENSG00000249017', 'score': 11.64}, {'connected_gene': 'PAM', 'score': 4.34}, {'connected_gene': 'LINC00492', 'score': 0.23}]
chr5	GH05I102498	102498982	102499041	0.61	[{'connected_gene': 'SLCO6A1', 'score': 556.15}, {'connected_gene': 'ENSG00000249017', 'score': 550.77}, {'connected_gene': 'RN7SKP68', 'score': 0.08}]
chr5	GH05I102530	102530836	102531126	0.2	[{'connected_gene': 'ENSG00000249017', 'score': 11.63}, {'connected_gene': 'SLCO6A1', 'score': 11.63}, {'connected_gene': 'LINC00492', 'score': 0.23}]