PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000287490	[[31439051, 31439178], [31439335, 31439472], [31439573, 31439749]]	[[31439094, 31439178], [31439335, 31439472], [31439573, 31439646]]
ENST00000565462	[[31439096, 31439178], [31439335, 31439967]]	None
NM_005205	[[31439051, 31439178], [31439335, 31439472], [31439573, 31439749]]	[[31439094, 31439178], [31439335, 31439472], [31439573, 31439646]]

Promoter

Chrom	Start	End	Description
chr16	31439646	31439688	CAGE_peak_1_at_COX6A2_5end
chr16	31439694	31439715	CAGE_peak_2_at_COX6A2_5end
chr16	31439735	31439754	CAGE_peak_3_at_COX6A2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I031376	31376800	31376909	0.2	[{'connected_gene': 'ITGAX', 'score': 12.23}, {'connected_gene': 'COX6A2', 'score': 11.62}, {'connected_gene': 'PYCARD', 'score': 11.23}, {'connected_gene': 'ARMC5', 'score': 10.42}, {'connected_gene': 'GC16M031365', 'score': 0.77}, {'connected_gene': 'GC16M031380', 'score': 0.44}]
chr16	GH16I031441	31441895	31443729	2.23	[{'connected_gene': 'ZNF843', 'score': 550.77}, {'connected_gene': 'ENSG00000260740', 'score': 21.08}, {'connected_gene': 'COX6A2', 'score': 0.39}]
chr16	GH16I031404	31404146	31405309	1.06	[{'connected_gene': 'COX6A2', 'score': 12.93}, {'connected_gene': 'ARMC5', 'score': 11.09}, {'connected_gene': 'PRSS8', 'score': 11.08}, {'connected_gene': 'PRSS36', 'score': 11.05}, {'connected_gene': 'PYCARD', 'score': 10.54}, {'connected_gene': 'STX4', 'score': 10.18}, {'connected_gene': 'STX1B', 'score': 10.0}, {'connected_gene': 'ENSG00000260740', 'score': 9.61}, {'connected_gene': 'ENSG00000260757', 'score': 0.77}, {'connected_gene': 'ITGAD', 'score': 0.39}, {'connected_gene': 'ENSG00000277543', 'score': 0.34}]
chr16	GH16I031427	31427150	31431668	1.88	[{'connected_gene': 'COX6A2', 'score': 550.77}, {'connected_gene': 'ENSG00000277543', 'score': 550.77}, {'connected_gene': 'ARMC5', 'score': 24.01}, {'connected_gene': 'FUS', 'score': 23.87}, {'connected_gene': 'ENSG00000260740', 'score': 17.95}, {'connected_gene': 'ZNF785', 'score': 17.32}, {'connected_gene': 'C16orf58', 'score': 15.82}, {'connected_gene': 'MIR762HG', 'score': 12.99}, {'connected_gene': 'ZNF720', 'score': 12.17}, {'connected_gene': 'SETD1A', 'score': 11.29}, {'connected_gene': 'PYDC1', 'score': 11.19}, {'connected_gene': 'PRSS8', 'score': 10.86}, {'connected_gene': 'ZNF747', 'score': 10.69}, {'connected_gene': 'PYCARD', 'score': 10.6}, {'connected_gene': 'PRSS36', 'score': 10.52}, {'connected_gene': 'LOC730183', 'score': 10.48}, {'connected_gene': 'ENSG00000261474', 'score': 10.36}, {'connected_gene': 'ZNF646', 'score': 9.99}, {'connected_gene': 'ZNF668', 'score': 9.99}, {'connected_gene': 'ZNF843', 'score': 6.93}, {'connected_gene': 'CLUHP3', 'score': 3.95}]
chr16	GH16I031399	31399801	31400600	0.46	[{'connected_gene': 'COX6A2', 'score': 12.9}, {'connected_gene': 'PRSS8', 'score': 11.08}, {'connected_gene': 'ARMC5', 'score': 11.08}, {'connected_gene': 'PRSS36', 'score': 11.05}, {'connected_gene': 'PYCARD', 'score': 10.54}, {'connected_gene': 'STX4', 'score': 10.18}, {'connected_gene': 'STX1B', 'score': 10.0}, {'connected_gene': 'ENSG00000260740', 'score': 7.39}, {'connected_gene': 'ENSG00000260757', 'score': 0.77}, {'connected_gene': 'ITGAD', 'score': 0.44}, {'connected_gene': 'GC16P031393', 'score': 0.44}]
chr16	GH16I031385	31385840	31385989	0.43	[{'connected_gene': 'GC16M031380', 'score': 550.77}, {'connected_gene': 'ITGAX', 'score': 11.91}, {'connected_gene': 'PYCARD', 'score': 11.53}, {'connected_gene': 'COX6A2', 'score': 11.52}, {'connected_gene': 'HSD3B7', 'score': 10.76}, {'connected_gene': 'SETD1A', 'score': 10.76}, {'connected_gene': 'PRSS36', 'score': 10.7}, {'connected_gene': 'STX4', 'score': 10.31}, {'connected_gene': 'STX1B', 'score': 10.27}, {'connected_gene': 'ITGAD', 'score': 0.44}]
chr16	GH16I031386	31386167	31387101	0.93	[{'connected_gene': 'GC16M031380', 'score': 550.77}, {'connected_gene': 'ITGAX', 'score': 11.91}, {'connected_gene': 'PYCARD', 'score': 11.53}, {'connected_gene': 'COX6A2', 'score': 11.52}, {'connected_gene': 'HSD3B7', 'score': 10.76}, {'connected_gene': 'SETD1A', 'score': 10.76}, {'connected_gene': 'PRSS36', 'score': 10.7}, {'connected_gene': 'STX4', 'score': 10.31}, {'connected_gene': 'STX1B', 'score': 10.27}, {'connected_gene': 'ENSG00000260740', 'score': 10.18}, {'connected_gene': 'CLUHP3', 'score': 3.94}, {'connected_gene': 'ITGAD', 'score': 0.44}]
chr16	GH16I031382	31382680	31382810	0.75	[{'connected_gene': 'GC16M031380', 'score': 550.77}, {'connected_gene': 'ITGAX', 'score': 12.21}, {'connected_gene': 'COX6A2', 'score': 11.64}, {'connected_gene': 'PYCARD', 'score': 11.23}, {'connected_gene': 'ARMC5', 'score': 10.43}, {'connected_gene': 'GC16M031365', 'score': 0.39}]