PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000506538	[[110427413, 110428316], [110430617, 110430645], [110432776, 110432877], [110434419, 110434537], [110436287, 110436420], [110438043, 110438098], [110439484, 110439617], [110439875, 110440051], [110440395, 110440516], [110440993, 110441059], [110441755, 110441842], [110442992, 110443138], [110445887, 110446002], [110446486, 110446652], [110446868, 110446977], [110448772, 110448852], [110454710, 110454818], [110456193, 110456291], [110456693, 110456839], [110459502, 110459622], [110459805, 110459887], [110461305, 110461493], [110462431, 110466200]]	[[110427986, 110428316], [110430617, 110430645], [110432776, 110432877], [110434419, 110434537], [110436287, 110436420], [110438043, 110438098], [110439484, 110439617], [110439875, 110440051], [110440395, 110440516], [110440993, 110441059], [110441755, 110441842], [110442992, 110443138], [110445887, 110446002], [110446486, 110446652], [110446868, 110446977], [110448772, 110448852], [110454710, 110454818], [110456193, 110456291], [110456693, 110456839], [110459502, 110459622], [110459805, 110459887], [110461305, 110461493], [110462431, 110462581]]
ENST00000513710	[[110427982, 110428316], [110430617, 110430645], [110432776, 110432877], [110434419, 110434537], [110436287, 110436420], [110438043, 110438098], [110439484, 110439617], [110439875, 110440051], [110440395, 110440516], [110440993, 110441059], [110441755, 110441842], [110442992, 110443138], [110445887, 110446002], [110446486, 110446652], [110446868, 110446977], [110448772, 110448852], [110454710, 110454818], [110456193, 110456291], [110456693, 110456839], [110459502, 110459622], [110459805, 110459887], [110461305, 110461493], [110462431, 110462643]]	[[110427986, 110428316], [110430617, 110430645], [110432776, 110432877], [110434419, 110434537], [110436287, 110436420], [110438043, 110438098], [110439484, 110439617], [110439875, 110440051], [110440395, 110440516], [110440993, 110441059], [110441755, 110441842], [110442992, 110443138], [110445887, 110446002], [110446486, 110446652], [110446868, 110446977], [110448772, 110448852], [110454710, 110454818], [110456193, 110456291], [110456693, 110456839], [110459502, 110459622], [110459805, 110459887], [110461305, 110461493], [110462431, 110462581]]
ENST00000505303	[[110428018, 110428316], [110430617, 110430645], [110432776, 110432877], [110434419, 110434537], [110436287, 110436420], [110438043, 110438098], [110439484, 110439617], [110439875, 110440051], [110440395, 110440516], [110440993, 110441059], [110441755, 110441842], [110442992, 110443138], [110445887, 110446002], [110446486, 110446652], [110446868, 110447251]]	[[110428154, 110428316], [110430617, 110430645], [110432776, 110432877], [110434419, 110434537], [110436287, 110436420], [110438043, 110438098], [110439484, 110439617], [110439875, 110440051], [110440395, 110440516], [110440993, 110441059], [110441755, 110441842], [110442992, 110443138], [110445887, 110446002], [110446486, 110446652], [110446868, 110447007]]
ENST00000515784	[[110428044, 110428316], [110430617, 110430907]]	None
ENST00000504122	[[110432704, 110432877], [110434419, 110434537], [110436287, 110436420], [110438043, 110438098], [110439484, 110439559]]	[[110432805, 110432877], [110434419, 110434537], [110436287, 110436420], [110438043, 110438098], [110439484, 110439559]]
NM_139281	[[110427869, 110428316], [110430617, 110430645], [110432776, 110432877], [110434419, 110434537], [110436287, 110436420], [110438043, 110438098], [110439484, 110439617], [110439875, 110440051], [110440395, 110440516], [110440993, 110441059], [110441755, 110441842], [110442992, 110443138], [110445887, 110446002], [110446486, 110446652], [110446868, 110446977], [110448772, 110448852], [110454710, 110454818], [110456193, 110456291], [110456693, 110456839], [110459502, 110459622], [110459805, 110459887], [110461305, 110461493], [110462431, 110466200]]	[[110427986, 110428316], [110430617, 110430645], [110432776, 110432877], [110434419, 110434537], [110436287, 110436420], [110438043, 110438098], [110439484, 110439617], [110439875, 110440051], [110440395, 110440516], [110440993, 110441059], [110441755, 110441842], [110442992, 110443138], [110445887, 110446002], [110446486, 110446652], [110446868, 110446977], [110448772, 110448852], [110454710, 110454818], [110456193, 110456291], [110456693, 110456839], [110459502, 110459622], [110459805, 110459887], [110461305, 110461493], [110462431, 110462581]]

Promoter

Chrom	Start	End	Description
chr5	110428004	110428087	CAGE_peak_1_at_WDR36_5end
chr5	110428100	110428113	CAGE_peak_2_at_WDR36_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I111753	111753601	111759250	2.45	[{'connected_gene': 'NREP', 'score': 554.38}, {'connected_gene': 'RPS3AP21', 'score': 22.16}, {'connected_gene': 'SNORA13', 'score': 13.11}, {'connected_gene': 'WDR36', 'score': 11.58}, {'connected_gene': 'BCLAF1P1', 'score': 10.0}, {'connected_gene': 'RN7SKP57', 'score': 0.28}, {'connected_gene': 'LOC105379122', 'score': 0.19}]
chr5	GH05I111251	111251913	111255848	1.31	[{'connected_gene': 'TSLP', 'score': 10.38}, {'connected_gene': 'CAMK4', 'score': 8.16}, {'connected_gene': 'WDR36', 'score': 1.28}, {'connected_gene': 'GC05P111246', 'score': 0.44}, {'connected_gene': 'ENSG00000249318', 'score': 0.37}]
chr5	GH05I111133	111133643	111135619	0.43	[{'connected_gene': 'TSLP', 'score': 31.05}, {'connected_gene': 'WDR36', 'score': 11.79}, {'connected_gene': 'GC05P111128', 'score': 0.44}, {'connected_gene': 'GC05M111139', 'score': 0.39}]
chr5	GH05I111136	111136000	111136212	0.51	[{'connected_gene': 'TSLP', 'score': 22.43}, {'connected_gene': 'WDR36', 'score': 8.52}, {'connected_gene': 'GC05P111128', 'score': 0.44}, {'connected_gene': 'GC05M111139', 'score': 0.39}]
chr5	GH05I111072	111072801	111074001	1.92	[{'connected_gene': 'TSLP', 'score': 595.57}, {'connected_gene': 'WDR36', 'score': 0.37}]
chr5	GH05I111071	111071664	111071723	0.61	[{'connected_gene': 'TSLP', 'score': 550.77}, {'connected_gene': 'WDR36', 'score': 0.34}]
chr5	GH05I111069	111069702	111070661	0.49	[{'connected_gene': 'TSLP', 'score': 603.0}, {'connected_gene': 'WDR36', 'score': 0.34}]
chr5	GH05I111074	111074941	111076087	0.6	[{'connected_gene': 'TSLP', 'score': 0.44}, {'connected_gene': 'WDR36', 'score': 0.37}]
chr5	GH05I111117	111117303	111117452	0.38	[{'connected_gene': 'TSLP', 'score': 16.57}, {'connected_gene': 'GC05P111128', 'score': 0.39}, {'connected_gene': 'WDR36', 'score': 0.31}, {'connected_gene': 'ENSG00000253613', 'score': 0.31}]
chr5	GH05I111223	111223320	111239987	2.65	[{'connected_gene': 'CAMK4', 'score': 570.84}, {'connected_gene': 'WDR36', 'score': 16.54}, {'connected_gene': 'RPS3AP21', 'score': 13.33}, {'connected_gene': 'ENSG00000249318', 'score': 11.34}, {'connected_gene': 'TSLP', 'score': 10.43}, {'connected_gene': 'GC05M111236', 'score': 0.44}]
chr5	GH05I111091	111091539	111094169	1.64	[{'connected_gene': 'WDR36', 'score': 650.26}, {'connected_gene': 'ENSG00000253613', 'score': 550.77}, {'connected_gene': 'RPS3AP21', 'score': 60.97}, {'connected_gene': 'TSLP', 'score': 44.81}, {'connected_gene': 'SLC25A46', 'score': 12.64}, {'connected_gene': 'TMEM232', 'score': 10.36}, {'connected_gene': 'BCLAF1P1', 'score': 10.08}, {'connected_gene': 'STARD4-AS1', 'score': 9.69}, {'connected_gene': 'GC05P111128', 'score': 0.28}]
chr5	GH05I111461	111461483	111461672	0.46	[{'connected_gene': 'WDR36', 'score': 4.43}, {'connected_gene': 'STARD4-AS1', 'score': 0.23}, {'connected_gene': 'GC05P111374', 'score': 0.17}, {'connected_gene': 'CAMK4', 'score': 0.07}]
chr5	GH05I111494	111494241	111495546	0.89	[{'connected_gene': 'STARD4', 'score': 4.65}, {'connected_gene': 'CAMK4', 'score': 2.01}, {'connected_gene': 'WDR36', 'score': 1.75}, {'connected_gene': 'STARD4-AS1', 'score': 0.37}, {'connected_gene': 'GC05M111479', 'score': 0.29}, {'connected_gene': 'GC05P111374', 'score': 0.13}]
chr5	GH05I111529	111529746	111531932	1.47	[{'connected_gene': 'STARD4', 'score': 13.25}, {'connected_gene': 'SNORA13', 'score': 13.09}, {'connected_gene': 'RPS3AP21', 'score': 12.44}, {'connected_gene': 'WDR36', 'score': 11.6}, {'connected_gene': 'GC05M111479', 'score': 0.77}, {'connected_gene': 'STARD4-AS1', 'score': 0.37}, {'connected_gene': 'ENSG00000251099', 'score': 0.26}]
chr5	GH05I111502	111502466	111502833	0.24	[{'connected_gene': 'STARD4', 'score': 8.57}, {'connected_gene': 'WDR36', 'score': 2.35}, {'connected_gene': 'CAMK4', 'score': 2.25}, {'connected_gene': 'STARD4-AS1', 'score': 0.44}, {'connected_gene': 'GC05M111479', 'score': 0.31}, {'connected_gene': 'GC05P111374', 'score': 0.13}]
chr5	GH05I111574	111574877	111575160	0.45	[{'connected_gene': 'STARD4', 'score': 51.36}, {'connected_gene': 'WDR36', 'score': 2.12}, {'connected_gene': 'HMGN1P13', 'score': 0.77}, {'connected_gene': 'STARD4-AS1', 'score': 0.21}, {'connected_gene': 'GC05M111608', 'score': 0.16}]
chr5	GH05I111510	111510200	111514518	2.35	[{'connected_gene': 'STARD4', 'score': 576.07}, {'connected_gene': 'STARD4-AS1', 'score': 550.77}, {'connected_gene': 'WDR36', 'score': 1.16}, {'connected_gene': 'GC05M111479', 'score': 0.37}]
chr5	GH05I111453	111453157	111455025	0.97	[{'connected_gene': 'ENSG00000251187', 'score': 9.31}, {'connected_gene': 'EPB41L4A', 'score': 9.31}, {'connected_gene': 'WDR36', 'score': 4.18}, {'connected_gene': 'STARD4-AS1', 'score': 0.22}, {'connected_gene': 'GC05P111374', 'score': 0.18}, {'connected_gene': 'CAMK4', 'score': 0.07}]
chr5	GH05I111116	111116801	111117000	0.38	[{'connected_gene': 'GC05P111128', 'score': 0.39}, {'connected_gene': 'ENSG00000253613', 'score': 0.34}, {'connected_gene': 'WDR36', 'score': 0.31}]
chr5	GH05I111127	111127603	111127772	0.31	[{'connected_gene': 'GC05P111128', 'score': 550.77}, {'connected_gene': 'WDR36', 'score': 0.28}, {'connected_gene': 'ENSG00000253613', 'score': 0.28}]