PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000513982	[[166282345, 166282463], [166385541, 166385738], [166388839, 166389007], [166403393, 166403474]]	[[166385570, 166385738], [166388839, 166389007], [166403393, 166403474]]
ENST00000402744	[[166300093, 166300680], [166385541, 166385738], [166388839, 166389007], [166403393, 166403511], [166405573, 166405756], [166408589, 166408729], [166414322, 166414422], [166416710, 166416829], [166418663, 166419472]]	[[166300373, 166300680], [166385541, 166385738], [166388839, 166389007], [166403393, 166403511], [166405573, 166405756], [166408589, 166408729], [166414322, 166414422], [166416710, 166416829], [166418663, 166418762]]
ENST00000480404	[[166300437, 166300680], [166302432, 166302626]]	[[166300437, 166300680], [166302432, 166302515]]
ENST00000431967	[[166336236, 166336398], [166385541, 166385738], [166388839, 166389007], [166403393, 166403499]]	[[166385570, 166385738], [166388839, 166389007], [166403393, 166403499]]
ENST00000511992	[[166339377, 166339440], [166385541, 166385738], [166388839, 166389007], [166403393, 166403511], [166405573, 166405590]]	[[166385570, 166385738], [166388839, 166389007], [166403393, 166403511], [166405573, 166405590]]
NM_001873	[[166300093, 166300680], [166385541, 166385738], [166388839, 166389007], [166403393, 166403511], [166405573, 166405756], [166408589, 166408729], [166414322, 166414422], [166416710, 166416829], [166418663, 166419699]]	[[166300373, 166300680], [166385541, 166385738], [166388839, 166389007], [166403393, 166403511], [166405573, 166405756], [166408589, 166408729], [166414322, 166414422], [166416710, 166416829], [166418663, 166418762]]

Promoter

Chrom	Start	End	Description
chr4	166299994	166300007	CAGE_peak_3_at_CPE_5end
chr4	166300084	166300091	CAGE_peak_8_at_CPE_5end
chr4	166300117	166300129	CAGE_peak_7_at_CPE_5end
chr4	166300153	166300168	CAGE_peak_2_at_CPE_5end
chr4	166300204	166300240	CAGE_peak_1_at_CPE_5end
chr4	166300251	166300262	CAGE_peak_5_at_CPE_5end
chr4	166300279	166300290	CAGE_peak_6_at_CPE_5end
chr4	166300312	166300323	CAGE_peak_4_at_CPE_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I165476	165476109	165477273	0.94	[{'connected_gene': 'TLL1', 'score': 10.59}, {'connected_gene': 'CPE', 'score': 6.57}, {'connected_gene': 'GC04P165491', 'score': 0.39}, {'connected_gene': 'GC04M165414', 'score': 0.23}]
chr4	GH04I165439	165439564	165441200	1.34	[{'connected_gene': 'MIR578', 'score': 10.73}, {'connected_gene': 'HADHAP1', 'score': 6.98}, {'connected_gene': 'CPE', 'score': 5.85}, {'connected_gene': 'FAM218A', 'score': 2.85}, {'connected_gene': 'GC04M165414', 'score': 0.37}, {'connected_gene': 'GC04P165491', 'score': 0.23}]
chr4	GH04I165394	165394582	165394755	0.34	[{'connected_gene': 'MIR578', 'score': 0.44}, {'connected_gene': 'HADHAP1', 'score': 0.39}, {'connected_gene': 'CPE', 'score': 0.29}]
chr4	GH04I165460	165460504	165462239	0.57	[{'connected_gene': 'MIR578', 'score': 10.89}, {'connected_gene': 'CPE', 'score': 5.94}, {'connected_gene': 'GC04P165491', 'score': 0.31}, {'connected_gene': 'GC04M165414', 'score': 0.28}]
chr4	GH04I165410	165410239	165410451	0.25	[{'connected_gene': 'MSMO1', 'score': 9.67}, {'connected_gene': 'CPE', 'score': 2.1}, {'connected_gene': 'FAM218A', 'score': 1.45}, {'connected_gene': 'HADHAP1', 'score': 0.77}, {'connected_gene': 'GC04M165414', 'score': 0.39}]
chr4	GH04I165323	165323078	165331128	2.49	[{'connected_gene': 'MSMO1', 'score': 550.77}, {'connected_gene': 'KLHL2', 'score': 39.23}, {'connected_gene': 'TMEM192', 'score': 10.87}, {'connected_gene': 'NACA3P', 'score': 10.44}, {'connected_gene': 'CPE', 'score': 5.18}, {'connected_gene': 'GC04M165293', 'score': 0.29}]
chr4	GH04I164961	164961151	164961472	0.27	[{'connected_gene': 'FAM218A', 'score': 7.46}, {'connected_gene': 'CPE', 'score': 2.68}, {'connected_gene': 'ENSG00000248632', 'score': 0.44}, {'connected_gene': 'TRIM61', 'score': 0.37}]
chr4	GH04I165378	165378257	165380338	1.96	[{'connected_gene': 'CPE', 'score': 550.37}, {'connected_gene': 'NACA3P', 'score': 12.63}, {'connected_gene': 'KLHL2', 'score': 11.55}, {'connected_gene': 'RPL21P51', 'score': 10.09}, {'connected_gene': 'GC04P165387', 'score': 0.44}]
chr4	GH04I165398	165398049	165398432	0.44	[{'connected_gene': 'CPE', 'score': 14.73}, {'connected_gene': 'HADHAP1', 'score': 0.44}, {'connected_gene': 'MIR578', 'score': 0.39}]
chr4	GH04I165501	165501270	165501532	0.24	[{'connected_gene': 'CPE', 'score': 6.31}, {'connected_gene': 'KLHL2', 'score': 1.17}, {'connected_gene': 'LOC105377520', 'score': 0.77}, {'connected_gene': 'GC04P165491', 'score': 0.39}]
chr4	GH04I165369	165369168	165371052	0.91	[{'connected_gene': 'CPE', 'score': 7.24}, {'connected_gene': 'KLHL2', 'score': 6.92}, {'connected_gene': 'GC04P165387', 'score': 0.37}]
chr4	GH04I165359	165359954	165360811	0.65	[{'connected_gene': 'CPE', 'score': 555.41}, {'connected_gene': 'LOC105377519', 'score': 0.39}]
chr4	GH04I165363	165363751	165365965	0.69	[{'connected_gene': 'KLHL2', 'score': 11.28}, {'connected_gene': 'CPE', 'score': 0.77}, {'connected_gene': 'GC04P165387', 'score': 0.34}]
chr4	GH04I165383	165383929	165384078	0.38	[{'connected_gene': 'GC04P165387', 'score': 0.77}, {'connected_gene': 'CPE', 'score': 0.34}]
chr4	GH04I165493	165493312	165493800	0.59	[{'connected_gene': 'GC04P165491', 'score': 0.77}, {'connected_gene': 'LOC105377520', 'score': 0.39}, {'connected_gene': 'CPE', 'score': 0.12}]