PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000299529	[[78632665, 78632840], [78633384, 78633563], [78635840, 78635954], [78640268, 78640572]]	[[78632770, 78632840], [78633384, 78633563], [78635840, 78635954], [78640268, 78640319]]
ENST00000406419	[[78632817, 78632840], [78633384, 78633678], [78635840, 78635954], [78640268, 78640420]]	[[78632817, 78632840], [78633384, 78633678], [78635840, 78635863]]
ENST00000560753	[[78640162, 78640563]]	None
NM_004378	[[78632665, 78632840], [78633384, 78633563], [78635840, 78635954], [78640268, 78640572]]	[[78632770, 78632840], [78633384, 78633563], [78635840, 78635954], [78640268, 78640319]]

Promoter

Chrom	Start	End	Description
chr15	78632686	78632701	CAGE_peak_1_at_CRABP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I078453	78453201	78457704	1.26	[{'connected_gene': 'PSMA4', 'score': 19.94}, {'connected_gene': 'IREB2', 'score': 16.27}, {'connected_gene': 'WDR61', 'score': 10.41}, {'connected_gene': 'CRABP1', 'score': 9.98}, {'connected_gene': 'ENSG00000259474', 'score': 0.31}, {'connected_gene': 'GC15M078021', 'score': 0.07}]
chr15	GH15I078263	78263669	78267781	1.69	[{'connected_gene': 'DNAJA4', 'score': 560.02}, {'connected_gene': 'LOC105370911', 'score': 550.77}, {'connected_gene': 'CRABP1', 'score': 10.39}, {'connected_gene': 'IREB2', 'score': 10.07}, {'connected_gene': 'ENSG00000259562', 'score': 9.84}, {'connected_gene': 'LOC645752', 'score': 7.59}, {'connected_gene': 'LOC105370910', 'score': 0.39}, {'connected_gene': 'GC15M078021', 'score': 0.04}]
chr15	GH15I078315	78315392	78317578	0.92	[{'connected_gene': 'IREB2', 'score': 32.08}, {'connected_gene': 'ENSG00000259562', 'score': 32.05}, {'connected_gene': 'WDR61', 'score': 22.65}, {'connected_gene': 'ENSG00000260988', 'score': 21.07}, {'connected_gene': 'CRABP1', 'score': 12.44}, {'connected_gene': 'ACSBG1', 'score': 10.18}, {'connected_gene': 'ENSG00000259322', 'score': 10.12}, {'connected_gene': 'HYKK', 'score': 9.79}, {'connected_gene': 'CHRNA5', 'score': 9.57}, {'connected_gene': 'DNAJA4', 'score': 8.93}, {'connected_gene': 'GC15P078331', 'score': 0.39}, {'connected_gene': 'GC15M078021', 'score': 0.05}]
chr15	GH15I078494	78494905	78495729	0.59	[{'connected_gene': 'IREB2', 'score': 10.94}, {'connected_gene': 'WDR61', 'score': 10.03}, {'connected_gene': 'CRABP1', 'score': 10.03}, {'connected_gene': 'GC15M078501', 'score': 0.44}, {'connected_gene': 'GC15M078500', 'score': 0.44}, {'connected_gene': 'ENSG00000259474', 'score': 0.39}, {'connected_gene': 'GC15M078021', 'score': 0.08}]
chr15	GH15I078411	78411164	78411268	0.51	[{'connected_gene': 'IREB2', 'score': 11.51}, {'connected_gene': 'CRABP1', 'score': 11.29}, {'connected_gene': 'SH2D7', 'score': 9.82}, {'connected_gene': 'TBC1D2B', 'score': 9.82}, {'connected_gene': 'DNAJA4', 'score': 2.06}, {'connected_gene': 'ENSG00000259413', 'score': 0.31}, {'connected_gene': 'RWDD1P1', 'score': 0.31}, {'connected_gene': 'GC15M078021', 'score': 0.06}]
chr15	GH15I078388	78388846	78390283	0.43	[{'connected_gene': 'IREB2', 'score': 16.28}, {'connected_gene': 'CRABP1', 'score': 11.9}, {'connected_gene': 'CIB2', 'score': 5.38}, {'connected_gene': 'LOC645752', 'score': 4.46}, {'connected_gene': 'ENSG00000259413', 'score': 0.44}, {'connected_gene': 'RWDD1P1', 'score': 0.44}, {'connected_gene': 'LOC105370912', 'score': 0.39}, {'connected_gene': 'GC15M078021', 'score': 0.06}]
chr15	GH15I078307	78307982	78308877	0.95	[{'connected_gene': 'IREB2', 'score': 22.25}, {'connected_gene': 'ENSG00000259562', 'score': 22.17}, {'connected_gene': 'HYKK', 'score': 19.21}, {'connected_gene': 'WDR61', 'score': 16.37}, {'connected_gene': 'CRABP1', 'score': 11.05}, {'connected_gene': 'ENSG00000260988', 'score': 10.15}, {'connected_gene': 'ENSG00000259322', 'score': 10.14}, {'connected_gene': 'GC15P078331', 'score': 0.34}, {'connected_gene': 'GC15M078021', 'score': 0.05}]
chr15	GH15I078340	78340714	78342288	0.6	[{'connected_gene': 'CRABP1', 'score': 555.55}, {'connected_gene': 'ENSG00000279694', 'score': 550.77}, {'connected_gene': 'WDR61', 'score': 12.65}, {'connected_gene': 'ENSG00000259562', 'score': 10.31}, {'connected_gene': 'HMG20A', 'score': 10.15}, {'connected_gene': 'ENSG00000260988', 'score': 9.96}, {'connected_gene': 'CSPG4P13', 'score': 5.05}, {'connected_gene': 'GC15M078021', 'score': 0.05}]
chr15	GH15I078341	78340219	78340703	1.06	[{'connected_gene': 'CRABP1', 'score': 550.77}, {'connected_gene': 'ENSG00000279694', 'score': 550.77}, {'connected_gene': 'WDR61', 'score': 12.65}, {'connected_gene': 'ENSG00000259562', 'score': 10.33}, {'connected_gene': 'HMG20A', 'score': 10.15}, {'connected_gene': 'ENSG00000260988', 'score': 9.96}, {'connected_gene': 'GC15M078021', 'score': 0.05}]
chr15	GH15I078399	78399037	78399600	0.58	[{'connected_gene': 'CRABP1', 'score': 11.63}, {'connected_gene': 'IREB2', 'score': 11.12}, {'connected_gene': 'ENSG00000259413', 'score': 0.37}, {'connected_gene': 'RWDD1P1', 'score': 0.37}, {'connected_gene': 'LOC105370912', 'score': 0.34}, {'connected_gene': 'GC15M078021', 'score': 0.06}]
chr15	GH15I078387	78387839	78387988	0.2	[{'connected_gene': 'CRABP1', 'score': 11.9}, {'connected_gene': 'IREB2', 'score': 10.55}, {'connected_gene': 'ENSG00000259413', 'score': 0.44}, {'connected_gene': 'RWDD1P1', 'score': 0.44}, {'connected_gene': 'LOC105370912', 'score': 0.39}, {'connected_gene': 'GC15M078021', 'score': 0.06}]
chr15	GH15I078405	78405639	78405788	0.2	[{'connected_gene': 'CRABP1', 'score': 11.56}, {'connected_gene': 'IREB2', 'score': 11.33}, {'connected_gene': 'ENSG00000259413', 'score': 0.34}, {'connected_gene': 'RWDD1P1', 'score': 0.34}, {'connected_gene': 'LOC105370912', 'score': 0.29}, {'connected_gene': 'GC15M078021', 'score': 0.06}]
chr15	GH15I078390	78390939	78391088	0.2	[{'connected_gene': 'CRABP1', 'score': 11.89}, {'connected_gene': 'IREB2', 'score': 10.55}, {'connected_gene': 'ENSG00000259413', 'score': 0.44}, {'connected_gene': 'RWDD1P1', 'score': 0.44}, {'connected_gene': 'LOC105370912', 'score': 0.37}, {'connected_gene': 'GC15M078021', 'score': 0.06}]
chr15	GH15I078389	78387468	78387668	0.2	[{'connected_gene': 'CRABP1', 'score': 11.9}, {'connected_gene': 'IREB2', 'score': 10.55}, {'connected_gene': 'ENSG00000259413', 'score': 0.77}, {'connected_gene': 'RWDD1P1', 'score': 0.77}, {'connected_gene': 'LOC105370912', 'score': 0.39}, {'connected_gene': 'GC15M078021', 'score': 0.06}]
chr15	GH15I078391	78390345	78390581	0.43	[{'connected_gene': 'CRABP1', 'score': 11.89}, {'connected_gene': 'IREB2', 'score': 10.55}, {'connected_gene': 'ENSG00000259413', 'score': 0.44}, {'connected_gene': 'RWDD1P1', 'score': 0.44}, {'connected_gene': 'LOC105370912', 'score': 0.37}, {'connected_gene': 'GC15M078021', 'score': 0.06}]
chr15	GH15I078275	78275430	78277745	0.86	[{'connected_gene': 'CRABP1', 'score': 10.3}, {'connected_gene': 'IREB2', 'score': 10.14}, {'connected_gene': 'TBC1D2B', 'score': 9.93}, {'connected_gene': 'SH2D7', 'score': 9.93}, {'connected_gene': 'ENSG00000259562', 'score': 9.31}, {'connected_gene': 'WDR61', 'score': 6.23}, {'connected_gene': 'LOC105370910', 'score': 0.77}, {'connected_gene': 'LOC105370911', 'score': 0.39}, {'connected_gene': 'DNAJA4', 'score': 0.39}, {'connected_gene': 'GC15M078021', 'score': 0.05}]
chr15	GH15I078305	78305412	78307516	1.08	[{'connected_gene': 'CRABP1', 'score': 11.05}, {'connected_gene': 'IREB2', 'score': 10.36}, {'connected_gene': 'HYKK', 'score': 10.17}, {'connected_gene': 'WDR61', 'score': 8.03}, {'connected_gene': 'DNAJA4', 'score': 4.66}, {'connected_gene': 'GC15P078331', 'score': 0.34}, {'connected_gene': 'GC15M078021', 'score': 0.05}]
chr15	GH15I078397	78397019	78397208	0.67	[{'connected_gene': 'CRABP1', 'score': 11.33}, {'connected_gene': 'IREB2', 'score': 10.91}, {'connected_gene': 'HYKK', 'score': 10.83}, {'connected_gene': 'ENSG00000259413', 'score': 0.39}, {'connected_gene': 'RWDD1P1', 'score': 0.39}, {'connected_gene': 'LOC105370912', 'score': 0.34}, {'connected_gene': 'GC15M078021', 'score': 0.06}]
chr15	GH15I078394	78394839	78395776	0.71	[{'connected_gene': 'CRABP1', 'score': 11.71}, {'connected_gene': 'IREB2', 'score': 11.1}, {'connected_gene': 'HYKK', 'score': 10.83}, {'connected_gene': 'CIB2', 'score': 4.5}, {'connected_gene': 'ENSG00000259413', 'score': 0.39}, {'connected_gene': 'RWDD1P1', 'score': 0.39}, {'connected_gene': 'LOC105370912', 'score': 0.37}, {'connected_gene': 'GC15M078021', 'score': 0.06}]
chr15	GH15I078564	78564707	78566946	1.93	[{'connected_gene': 'CHRNA5', 'score': 598.59}, {'connected_gene': 'PSMA4', 'score': 13.84}, {'connected_gene': 'IREB2', 'score': 13.14}, {'connected_gene': 'TBC1D2B', 'score': 10.96}, {'connected_gene': 'HYKK', 'score': 10.75}, {'connected_gene': 'MORF4L1', 'score': 9.42}, {'connected_gene': 'ADAMTS7', 'score': 9.41}, {'connected_gene': 'CRABP1', 'score': 9.36}, {'connected_gene': 'RASGRF1', 'score': 4.7}, {'connected_gene': 'ENSG00000261762', 'score': 0.31}, {'connected_gene': 'GC15M078021', 'score': 0.12}]
chr15	GH15I078460	78460972	78462348	1	[{'connected_gene': 'CHRNA5', 'score': 43.9}, {'connected_gene': 'IREB2', 'score': 21.22}, {'connected_gene': 'WDR61', 'score': 11.07}, {'connected_gene': 'CRABP1', 'score': 10.27}, {'connected_gene': 'ACSBG1', 'score': 1.9}, {'connected_gene': 'ENSG00000259474', 'score': 0.34}, {'connected_gene': 'GC15M078021', 'score': 0.07}]
chr15	GH15I078447	78447512	78451094	1.19	[{'connected_gene': 'CHRNA5', 'score': 33.71}, {'connected_gene': 'CRABP1', 'score': 10.19}, {'connected_gene': 'PSMA4', 'score': 9.2}, {'connected_gene': 'IREB2', 'score': 0.39}, {'connected_gene': 'ENSG00000259474', 'score': 0.29}, {'connected_gene': 'GC15M078021', 'score': 0.07}]
chr15	GH15I078671	78671239	78672483	0.66	[{'connected_gene': 'CHRNA5', 'score': 16.31}, {'connected_gene': 'CRABP1', 'score': 9.54}, {'connected_gene': 'CHRNB4', 'score': 6.58}, {'connected_gene': 'GC15M078668', 'score': 0.77}, {'connected_gene': 'LOC646934', 'score': 0.39}, {'connected_gene': 'RPL18P11', 'score': 0.39}, {'connected_gene': 'GC15M078021', 'score': 0.31}]
chr15	GH15I078346	78346947	78349023	0.73	[{'connected_gene': 'GC15P078347', 'score': 550.77}, {'connected_gene': 'IREB2', 'score': 10.49}, {'connected_gene': 'LOC645752', 'score': 6.18}, {'connected_gene': 'CRABP1', 'score': 0.44}, {'connected_gene': 'LOC105370912', 'score': 0.31}, {'connected_gene': 'GC15M078021', 'score': 0.05}]
chr15	GH15I078417	78417922	78420045	0.82	[{'connected_gene': 'ENSG00000259562', 'score': 70.62}, {'connected_gene': 'IREB2', 'score': 49.74}, {'connected_gene': 'TBC1D2B', 'score': 33.09}, {'connected_gene': 'WDR61', 'score': 20.99}, {'connected_gene': 'ENSG00000259322', 'score': 11.81}, {'connected_gene': 'CRABP1', 'score': 11.68}, {'connected_gene': 'CHRNA5', 'score': 11.32}, {'connected_gene': 'HMG20A', 'score': 9.73}, {'connected_gene': 'PSMA4', 'score': 7.03}, {'connected_gene': 'ENSG00000259413', 'score': 0.28}, {'connected_gene': 'RWDD1P1', 'score': 0.28}, {'connected_gene': 'GC15M078021', 'score': 0.06}]
chr15	GH15I078331	78331399	78331933	0.31	[{'connected_gene': 'GC15P078331', 'score': 550.77}, {'connected_gene': 'IREB2', 'score': 10.34}, {'connected_gene': 'CRABP1', 'score': 0.44}, {'connected_gene': 'GC15M078021', 'score': 0.05}]
chr15	GH15I078291	78291799	78291948	0.74	[{'connected_gene': 'ENSG00000259562', 'score': 550.77}, {'connected_gene': 'ENSG00000259322', 'score': 550.77}, {'connected_gene': 'CRABP1', 'score': 10.86}, {'connected_gene': 'WDR61', 'score': 0.44}, {'connected_gene': 'GC15M078021', 'score': 0.05}]