PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000217420	[[37353104, 37353757], [37356094, 37358015]]	[[37353367, 37353757], [37356094, 37357282]]
NM_080552	[[37353104, 37353757], [37356094, 37358015]]	[[37353367, 37353757], [37356094, 37357282]]

Promoter

Chrom	Start	End	Description
chr20	37352783	37352872	CAGE_peak_2_at_SLC32A1_5end
chr20	37353036	37353054	CAGE_peak_4_at_SLC32A1_5end
chr20	37353084	37353109	CAGE_peak_3_at_SLC32A1_5end
chr20	37353121	37353137	CAGE_peak_1_at_SLC32A1_5end
chr20	37353236	37353237	CAGE_peak_5_at_SLC32A1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I039049	39049378	39050827	1.45	[{'connected_gene': 'DHX35', 'score': 6.16}, {'connected_gene': 'SLC32A1', 'score': 3.18}, {'connected_gene': 'PPP1R16B', 'score': 2.16}, {'connected_gene': 'PIR38411', 'score': 0.34}, {'connected_gene': 'NPM1P19', 'score': 0.19}]
chr20	GH20I038730	38730387	38731898	1.17	[{'connected_gene': 'SNHG17', 'score': 29.34}, {'connected_gene': 'ACTR5', 'score': 15.69}, {'connected_gene': 'SNORA71C', 'score': 14.05}, {'connected_gene': 'SNORA71A', 'score': 13.33}, {'connected_gene': 'RN7SKP173', 'score': 12.48}, {'connected_gene': 'RALGAPB', 'score': 12.23}, {'connected_gene': 'TTI1', 'score': 11.59}, {'connected_gene': 'RPS3P2', 'score': 10.66}, {'connected_gene': 'DHX35', 'score': 10.09}, {'connected_gene': 'ARHGAP40', 'score': 4.58}, {'connected_gene': 'SLC32A1', 'score': 0.44}]
chr20	GH20I038673	38673601	38675040	1.36	[{'connected_gene': 'ARHGAP40', 'score': 6.1}, {'connected_gene': 'KIAA1755', 'score': 5.05}, {'connected_gene': 'ACTR5', 'score': 1.58}, {'connected_gene': 'SLC32A1', 'score': 1.47}, {'connected_gene': 'PIR44827', 'score': 0.34}, {'connected_gene': 'GC20M038618', 'score': 0.22}]
chr20	GH20I038856	38856246	38856557	0.61	[{'connected_gene': 'PPP1R16B', 'score': 4.2}, {'connected_gene': 'ACTR5', 'score': 1.9}, {'connected_gene': 'SLC32A1', 'score': 1.35}, {'connected_gene': 'RN7SL116P', 'score': 0.37}]
chr20	GH20I038724	38724437	38724496	0.93	[{'connected_gene': 'SLC32A1', 'score': 550.77}, {'connected_gene': 'GC20P038725', 'score': 550.77}, {'connected_gene': 'ACTR5', 'score': 0.34}]
chr20	GH20I038729	38729418	38729527	0.54	[{'connected_gene': 'SLC32A1', 'score': 0.44}, {'connected_gene': 'ACTR5', 'score': 0.37}]
chr20	GH20I038728	38727298	38727467	0.65	[{'connected_gene': 'SLC32A1', 'score': 0.77}, {'connected_gene': 'ACTR5', 'score': 0.34}]
chr20	GH20I038727	38727618	38727727	0.54	[{'connected_gene': 'SLC32A1', 'score': 0.77}, {'connected_gene': 'ACTR5', 'score': 0.34}]
chr20	GH20I038726	38725978	38726127	0.57	[{'connected_gene': 'SLC32A1', 'score': 550.77}, {'connected_gene': 'GC20P038725', 'score': 550.77}, {'connected_gene': 'ACTR5', 'score': 0.34}]
chr20	GH20I038731	38728298	38728367	0.46	[{'connected_gene': 'SLC32A1', 'score': 0.77}, {'connected_gene': 'ACTR5', 'score': 0.37}]
chr20	GH20I038725	38725458	38725467	0.59	[{'connected_gene': 'SLC32A1', 'score': 550.77}, {'connected_gene': 'GC20P038725', 'score': 550.77}, {'connected_gene': 'ACTR5', 'score': 0.34}]
chr20	GH20I038732	38725318	38725427	0.66	[{'connected_gene': 'SLC32A1', 'score': 550.77}, {'connected_gene': 'GC20P038725', 'score': 550.77}, {'connected_gene': 'ACTR5', 'score': 0.34}]
chr20	GH20I038733	38725518	38725607	0.54	[{'connected_gene': 'SLC32A1', 'score': 550.77}, {'connected_gene': 'GC20P038725', 'score': 550.77}, {'connected_gene': 'ACTR5', 'score': 0.34}]
chr20	GH20I038651	38651966	38652213	0.39	[{'connected_gene': 'SLC32A1', 'score': 3.81}, {'connected_gene': 'GC20M038618', 'score': 0.29}, {'connected_gene': 'PIR44827', 'score': 0.25}]
chr20	GH20I038722	38722671	38723271	0.67	[{'connected_gene': 'SLC32A1', 'score': 560.78}, {'connected_gene': 'GC20P038725', 'score': 550.77}, {'connected_gene': 'ENSG00000277965', 'score': 0.39}]
chr20	GH20I038870	38870237	38877393	1.62	[{'connected_gene': 'RN7SL116P', 'score': 550.77}, {'connected_gene': 'PPP1R16B', 'score': 15.12}, {'connected_gene': 'FAM83D', 'score': 10.94}, {'connected_gene': 'ACTR5', 'score': 6.27}, {'connected_gene': 'SLC32A1', 'score': 2.79}, {'connected_gene': 'DHX35', 'score': 2.26}, {'connected_gene': 'RALGAPB', 'score': 2.09}, {'connected_gene': 'GC20M038907', 'score': 0.26}]