PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000008527	[[107385141, 107385779], [107386564, 107386668], [107386742, 107386814], [107391071, 107391164], [107391265, 107391468], [107391692, 107391844], [107393328, 107393640], [107393719, 107393860], [107395057, 107395146], [107395541, 107395726], [107398883, 107399026], [107415861, 107415970], [107486581, 107487607]]	[[107386564, 107386668], [107386742, 107386814], [107391071, 107391164], [107391265, 107391468], [107391692, 107391844], [107393328, 107393640], [107393719, 107393860], [107395057, 107395146], [107395541, 107395726], [107398883, 107399026], [107415861, 107415970], [107486581, 107486739]]
ENST00000550633	[[107466712, 107466832], [107486581, 107487291]]	None
ENST00000552790	[[107385144, 107386814], [107391071, 107391184], [107391265, 107391468], [107391692, 107391844], [107393328, 107393640], [107393719, 107393860], [107395057, 107395146], [107395541, 107395726], [107398883, 107399026], [107415861, 107415970], [107436727, 107436956], [107443548, 107443630], [107443731, 107444137]]	None
ENST00000549356	[[107386264, 107386668], [107386742, 107386814], [107391071, 107391164], [107391265, 107391317]]	[[107386564, 107386668], [107386742, 107386814], [107391071, 107391164], [107391265, 107391317]]
ENST00000546722	[[107393566, 107393860], [107395057, 107395146], [107395541, 107395629]]	None
NM_004075	[[107385141, 107385779], [107386564, 107386668], [107386742, 107386814], [107391071, 107391164], [107391265, 107391468], [107391692, 107391844], [107393328, 107393640], [107393719, 107393860], [107395057, 107395146], [107395541, 107395726], [107398883, 107399026], [107415861, 107415970], [107486581, 107487635]]	[[107386564, 107386668], [107386742, 107386814], [107391071, 107391164], [107391265, 107391468], [107391692, 107391844], [107393328, 107393640], [107393719, 107393860], [107395057, 107395146], [107395541, 107395726], [107398883, 107399026], [107415861, 107415970], [107486581, 107486739]]

Promoter

Chrom	Start	End	Description
chr12	107486810	107486828	CAGE_peak_9_at_CRY1_5end
chr12	107486857	107486873	CAGE_peak_10_at_CRY1_5end
chr12	107487287	107487302	CAGE_peak_3_at_CRY1_5end
chr12	107487303	107487335	CAGE_peak_1_at_CRY1_5end
chr12	107487338	107487358	CAGE_peak_2_at_CRY1_5end
chr12	107487562	107487570	CAGE_peak_7_at_CRY1_5end
chr12	107487578	107487590	CAGE_peak_6_at_CRY1_5end
chr12	107487604	107487635	CAGE_peak_4_at_CRY1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I106130	106130193	106143152	2.41	[{'connected_gene': 'NUAK1', 'score': 556.8}, {'connected_gene': 'CRY1', 'score': 18.32}, {'connected_gene': 'POLR3B', 'score': 9.29}, {'connected_gene': 'ENSG00000260329', 'score': 4.58}, {'connected_gene': 'ENSG00000257438', 'score': 0.29}]
chr12	GH12I106111	106111567	106115672	1.26	[{'connected_gene': 'NUAK1', 'score': 11.42}, {'connected_gene': 'CRY1', 'score': 10.18}, {'connected_gene': 'ENSG00000257438', 'score': 0.39}]
chr12	GH12I107014	107014123	107014272	0.54	[{'connected_gene': 'MTERF2', 'score': 17.42}, {'connected_gene': 'CRY1', 'score': 9.29}, {'connected_gene': 'GC12M107010', 'score': 0.77}, {'connected_gene': 'GC12M106992', 'score': 0.34}]
chr12	GH12I106994	106994656	106995691	0.38	[{'connected_gene': 'MTERF2', 'score': 4.79}, {'connected_gene': 'GC12M106992', 'score': 0.77}, {'connected_gene': 'GC12M107010', 'score': 0.34}, {'connected_gene': 'CRY1', 'score': 0.15}]
chr12	GH12I107079	107079200	107079800	0.87	[{'connected_gene': 'MTERF2', 'score': 4.51}, {'connected_gene': 'ENSG00000257548', 'score': 0.39}, {'connected_gene': 'CRY1', 'score': 0.39}, {'connected_gene': 'PIR33339', 'score': 0.26}]
chr12	GH12I106984	106984883	106988173	2.04	[{'connected_gene': 'MTERF2', 'score': 558.1}, {'connected_gene': 'GC12P106984', 'score': 550.77}, {'connected_gene': 'PWP1', 'score': 14.38}, {'connected_gene': 'PRDM4', 'score': 13.67}, {'connected_gene': 'ENSG00000260329', 'score': 9.19}, {'connected_gene': 'CRY1', 'score': 4.31}]
chr12	GH12I106581	106581938	106582175	0.55	[{'connected_gene': 'RFX4', 'score': 573.4}, {'connected_gene': 'CRY1', 'score': 9.85}, {'connected_gene': 'RIC8B', 'score': 3.74}, {'connected_gene': 'MTERF2', 'score': 1.85}, {'connected_gene': 'GC12P106517', 'score': 0.21}, {'connected_gene': 'LOC100287944', 'score': 0.08}]
chr12	GH12I106584	106582186	106582252	0.46	[{'connected_gene': 'RFX4', 'score': 550.77}, {'connected_gene': 'CRY1', 'score': 9.85}, {'connected_gene': 'GC12P106517', 'score': 0.2}, {'connected_gene': 'LOC100287944', 'score': 0.08}]
chr12	GH12I107948	107948456	107949369	0.2	[{'connected_gene': 'LOC390358', 'score': 5.62}, {'connected_gene': 'CRY1', 'score': 4.54}, {'connected_gene': 'GC12P107962', 'score': 0.39}, {'connected_gene': 'ENSG00000257129', 'score': 0.28}]
chr12	GH12I106345	106345800	106346092	1.05	[{'connected_gene': 'TCP11L2', 'score': 23.41}, {'connected_gene': 'MTERF2', 'score': 11.93}, {'connected_gene': 'CRY1', 'score': 11.63}, {'connected_gene': 'POLR3B', 'score': 0.39}, {'connected_gene': 'CKAP4', 'score': 0.26}]
chr12	GH12I106328	106328563	106329815	0.6	[{'connected_gene': 'TCP11L2', 'score': 10.33}, {'connected_gene': 'CRY1', 'score': 6.0}, {'connected_gene': 'CKAP4', 'score': 0.34}, {'connected_gene': 'POLR3B', 'score': 0.31}]
chr12	GH12I107090	107090822	107095124	2.25	[{'connected_gene': 'CRY1', 'score': 565.36}, {'connected_gene': 'ENSG00000257548', 'score': 550.77}, {'connected_gene': 'MTERF2', 'score': 13.2}, {'connected_gene': 'ENSG00000257398', 'score': 5.17}, {'connected_gene': 'PIR33339', 'score': 0.22}]
chr12	GH12I107042	107042501	107043695	0.38	[{'connected_gene': 'CRY1', 'score': 13.98}, {'connected_gene': 'MTERF2', 'score': 11.04}, {'connected_gene': 'PIR33339', 'score': 0.44}, {'connected_gene': 'ENSG00000257548', 'score': 0.23}]
chr12	GH12I106286	106286966	106290007	1.67	[{'connected_gene': 'CRY1', 'score': 12.74}, {'connected_gene': 'POLR3B', 'score': 10.25}, {'connected_gene': 'TCP11L2', 'score': 7.31}, {'connected_gene': 'MTERF2', 'score': 4.71}, {'connected_gene': 'GC12M106290', 'score': 0.77}, {'connected_gene': 'RNU7-94P', 'score': 0.44}, {'connected_gene': 'CKAP4', 'score': 0.37}]
chr12	GH12I107109	107109536	107111333	0.69	[{'connected_gene': 'CRY1', 'score': 15.63}, {'connected_gene': 'GC12M107118', 'score': 0.39}, {'connected_gene': 'ENSG00000257548', 'score': 0.37}]
chr12	GH12I107351	107351062	107353676	1.36	[{'connected_gene': 'BTBD11', 'score': 1.55}, {'connected_gene': 'CRY1', 'score': 1.47}, {'connected_gene': 'ASCL4', 'score': 1.3}, {'connected_gene': 'GC12M107333', 'score': 0.37}, {'connected_gene': 'GC12M107354', 'score': 0.34}]
chr12	GH12I107386	107386983	107387264	0.35	[{'connected_gene': 'BTBD11', 'score': 2.21}, {'connected_gene': 'CRY1', 'score': 1.9}, {'connected_gene': 'GC12P107396', 'score': 0.44}, {'connected_gene': 'GC12P107375', 'score': 0.39}]
chr12	GH12I107514	107514736	107516718	1.01	[{'connected_gene': 'PWP1', 'score': 11.49}, {'connected_gene': 'CRY1', 'score': 10.2}, {'connected_gene': 'PRDM4', 'score': 9.86}, {'connected_gene': 'ENSG00000200897', 'score': 9.84}, {'connected_gene': 'BTBD11', 'score': 5.6}, {'connected_gene': 'RNA5SP371', 'score': 0.31}, {'connected_gene': 'ENSG00000257579', 'score': 0.15}]
chr12	GH12I107104	107104601	107104972	0.92	[{'connected_gene': 'PWP1', 'score': 11.93}, {'connected_gene': 'PRDM4', 'score': 10.08}, {'connected_gene': 'MTERF2', 'score': 9.82}, {'connected_gene': 'ENSG00000257548', 'score': 0.39}, {'connected_gene': 'CRY1', 'score': 0.39}, {'connected_gene': 'GC12M107118', 'score': 0.37}]
chr12	GH12I107057	107057263	107057412	0.79	[{'connected_gene': 'PWP1', 'score': 12.78}, {'connected_gene': 'LOC101929162', 'score': 10.4}, {'connected_gene': 'CRY1', 'score': 10.16}, {'connected_gene': 'MTERF2', 'score': 10.09}, {'connected_gene': 'PRDM4', 'score': 9.98}, {'connected_gene': 'PIR33339', 'score': 0.34}, {'connected_gene': 'ENSG00000257548', 'score': 0.28}]
chr12	GH12I107030	107030379	107031730	0.31	[{'connected_gene': 'GC12M107024', 'score': 550.77}, {'connected_gene': 'MTERF2', 'score': 11.14}, {'connected_gene': 'TMEM263', 'score': 10.7}, {'connected_gene': 'PIR33339', 'score': 0.44}, {'connected_gene': 'CRY1', 'score': 0.21}]
chr12	GH12I107025	107025353	107030161	1.07	[{'connected_gene': 'GC12P107027', 'score': 550.77}, {'connected_gene': 'MTERF2', 'score': 15.18}, {'connected_gene': 'CRY1', 'score': 14.7}, {'connected_gene': 'GC12M107024', 'score': 0.77}]
chr12	GH12I108046	108046178	108047792	0.69	[{'connected_gene': 'PIR57656', 'score': 550.77}, {'connected_gene': 'PWP1', 'score': 16.12}, {'connected_gene': 'SART3', 'score': 14.4}, {'connected_gene': 'CRY1', 'score': 12.74}, {'connected_gene': 'PRDM4', 'score': 12.4}, {'connected_gene': 'GC12P108090', 'score': 0.26}]