PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr12	110940089	110940100	CAGE_peak_7_at_RAD9B_5end
chr12	110940111	110940142	CAGE_peak_2_at_RAD9B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I110531	110531490	110532531	1	[{'connected_gene': 'TCTN1', 'score': 10.98}, {'connected_gene': 'VPS29', 'score': 0.31}, {'connected_gene': 'RAD9B', 'score': 0.29}, {'connected_gene': 'PPTC7', 'score': 0.23}]
chr12	GH12I110499	110499048	110503028	2.13	[{'connected_gene': 'VPS29', 'score': 550.77}, {'connected_gene': 'RAD9B', 'score': 550.77}, {'connected_gene': 'ENSG00000278993', 'score': 550.77}, {'connected_gene': 'IFT81', 'score': 51.74}, {'connected_gene': 'ARPC3', 'score': 23.57}, {'connected_gene': 'FAM216A', 'score': 23.52}, {'connected_gene': 'ANAPC7', 'score': 19.92}, {'connected_gene': 'GPN3', 'score': 11.53}, {'connected_gene': 'RNU4-32P', 'score': 10.98}, {'connected_gene': 'HSPA8P14', 'score': 10.97}, {'connected_gene': 'ANKRD13A', 'score': 10.95}, {'connected_gene': 'TCHP', 'score': 9.69}, {'connected_gene': 'GC12M110497', 'score': 0.77}, {'connected_gene': 'ENSG00000202335', 'score': 0.77}]
chr12	GH12I110512	110512401	110512645	0.85	[{'connected_gene': 'GPN3', 'score': 36.66}, {'connected_gene': 'RAD9B', 'score': 0.39}, {'connected_gene': 'VPS29', 'score': 0.39}, {'connected_gene': 'PPTC7', 'score': 0.19}]
chr12	GH12I110078	110078800	110080477	1.72	[{'connected_gene': 'ARPC3', 'score': 22.94}, {'connected_gene': 'RNU4-32P', 'score': 21.66}, {'connected_gene': 'IFT81', 'score': 10.91}, {'connected_gene': 'ALKBH2', 'score': 10.63}, {'connected_gene': 'UBE3B', 'score': 9.81}, {'connected_gene': 'C12orf76', 'score': 3.64}, {'connected_gene': 'RAD9B', 'score': 2.67}, {'connected_gene': 'GIT2', 'score': 1.52}, {'connected_gene': 'GC12P110058', 'score': 0.34}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000433301	[[110939459, 110939535], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110952854, 110952961], [110956480, 110956511]]	None
ENST00000409246	[[110940004, 110940159], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110969889]]	[[110943520, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968458]]
ENST00000392672	[[110940043, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968438], [110969378, 110969891]]	[[110940142, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968438], [110969378, 110969434]]
ENST00000409300	[[110940095, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110969889]]	[[110940142, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968458]]
ENST00000409425	[[110940095, 110940181], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110969891]]	[[110943520, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968458]]
ENST00000409778	[[110940118, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110969378, 110969809]]	[[110940142, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110969378, 110969486]]
ENST00000409461	[[110940132, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110945881, 110945946]]	None
ENST00000358071	[[110940135, 110940181], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110949232, 110949388], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110969891]]	[[110943520, 110943577], [110944383, 110944498], [110949232, 110949324]]
ENST00000447044	[[110940147, 110940244], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110949232, 110949299]]	None
NM_001286531	[[110940004, 110940159], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110969891]]	[[110943520, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968458]]
NM_001286532	[[110940004, 110940181], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110969891]]	[[110943520, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968458]]
NM_001286533	[[110940004, 110940181], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110949232, 110949388], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110969891]]	[[110950669, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968458]]
NM_001286536	[[110940004, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110969378, 110969891]]	[[110940142, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110969378, 110969486]]
NM_152442	[[110940004, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968438], [110969378, 110969891]]	[[110940142, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968438], [110969378, 110969434]]
NM_001286535	[[110940004, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110969891]]	[[110940142, 110940188], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968458]]
NM_001286534	[[110940147, 110940244], [110941610, 110941681], [110943421, 110943577], [110944383, 110944498], [110949232, 110949388], [110950583, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110969891]]	[[110950669, 110950683], [110952854, 110952961], [110956480, 110956587], [110956678, 110956743], [110957598, 110957721], [110959981, 110960216], [110968329, 110968458]]