PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000398039	[[53191604, 53191817], [53196123, 53196399], [53201572, 53201713], [53206556, 53206629], [53211439, 53211581], [53216540, 53217919]]	[[53216627, 53217590]]
ENST00000342657	[[53191604, 53191817], [53196123, 53196399], [53201572, 53201713], [53203353, 53203494], [53206556, 53206629], [53211439, 53211581], [53216540, 53217919]]	[[53216627, 53217590]]
ENST00000357495	[[53216567, 53217915]]	[[53216627, 53217590]]
NM_001011725	[[53191604, 53191817], [53196123, 53196399], [53201572, 53201713], [53206556, 53206629], [53211439, 53211581], [53216540, 53217919]]	[[53216627, 53217590]]
NM_001011724	[[53191604, 53191817], [53196123, 53196399], [53201572, 53201713], [53203353, 53203494], [53206556, 53206629], [53211439, 53211581], [53216540, 53217919]]	[[53216627, 53217590]]

Promoter

Chrom	Start	End	Description
chr13	53173528	53173545	CAGE_peak_4_at_HNRNPA1L2_5end
chr13	53173859	53173865	CAGE_peak_3_at_HNRNPA1L2_5end
chr13	53174244	53174259	CAGE_peak_5_at_HNRNPA1L2_5end
chr13	53191613	53191624	CAGE_peak_2_at_HNRNPA1L2_5end
chr13	53216565	53216567	CAGE_peak_1_at_HNRNPA1L2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I052623	52623600	52624596	0.79	[{'connected_gene': 'TPTE2P2', 'score': 13.81}, {'connected_gene': 'HNRNPA1L2', 'score': 0.44}, {'connected_gene': 'ENSG00000273784', 'score': 0.34}, {'connected_gene': 'MRPS31P4', 'score': 0.34}, {'connected_gene': 'ENSG00000273723', 'score': 0.31}]
chr13	GH13I052404	52404200	52406800	1.72	[{'connected_gene': 'THSD1', 'score': 550.77}, {'connected_gene': 'TPTE2P2', 'score': 14.11}, {'connected_gene': 'HNRNPA1L2', 'score': 3.95}, {'connected_gene': 'RNY4P24', 'score': 0.44}]
chr13	GH13I052779	52779137	52779245	0.22	[{'connected_gene': 'PCDH8', 'score': 3.08}, {'connected_gene': 'HNRNPA1L2', 'score': 1.49}, {'connected_gene': 'LOC105370209', 'score': 0.39}, {'connected_gene': 'MIR759', 'score': 0.29}]
chr13	GH13I052606	52606601	52607200	0.49	[{'connected_gene': 'CKAP2', 'score': 24.3}, {'connected_gene': 'TPTE2P2', 'score': 13.81}, {'connected_gene': 'ENSG00000273784', 'score': 0.44}, {'connected_gene': 'MRPS31P4', 'score': 0.44}, {'connected_gene': 'LINC00345', 'score': 0.44}, {'connected_gene': 'HNRNPA1L2', 'score': 0.39}]
chr13	GH13I052616	52616457	52618600	1.83	[{'connected_gene': 'HNRNPA1L2', 'score': 550.77}, {'connected_gene': 'TPTE2P2', 'score': 15.06}, {'connected_gene': 'UTP14C', 'score': 13.26}, {'connected_gene': 'ALG11', 'score': 13.13}, {'connected_gene': 'ENSG00000273784', 'score': 0.37}, {'connected_gene': 'MRPS31P4', 'score': 0.37}, {'connected_gene': 'ENSG00000273723', 'score': 0.29}]
chr13	GH13I052640	52640756	52640815	0.5	[{'connected_gene': 'HNRNPA1L2', 'score': 550.34}, {'connected_gene': 'TPTE2P2', 'score': 13.81}, {'connected_gene': 'MIR759', 'score': 10.41}, {'connected_gene': 'ENSG00000273723', 'score': 0.39}, {'connected_gene': 'ENSG00000273784', 'score': 0.26}]
chr13	GH13I052631	52631201	52631400	0.31	[{'connected_gene': 'HNRNPA1L2', 'score': 0.39}, {'connected_gene': 'ENSG00000273723', 'score': 0.34}, {'connected_gene': 'ENSG00000273784', 'score': 0.29}, {'connected_gene': 'MRPS31P4', 'score': 0.29}]
chr13	GH13I052642	52642382	52642441	0.5	[{'connected_gene': 'HNRNPA1L2', 'score': 550.34}, {'connected_gene': 'ENSG00000273723', 'score': 0.44}, {'connected_gene': 'ENSG00000273784', 'score': 0.26}]
chr13	GH13I052193	52193319	52196000	2.06	[{'connected_gene': 'MRPS31P5', 'score': 570.55}, {'connected_gene': 'ALG11', 'score': 54.8}, {'connected_gene': 'RPS4XP16', 'score': 40.0}, {'connected_gene': 'UTP14C', 'score': 38.07}, {'connected_gene': 'SUGT1', 'score': 38.02}, {'connected_gene': 'CKAP2', 'score': 34.32}, {'connected_gene': 'INTS6', 'score': 27.12}, {'connected_gene': 'SERPINE3', 'score': 22.39}, {'connected_gene': 'INTS6-AS1', 'score': 21.06}, {'connected_gene': 'TPTE2P2', 'score': 15.11}, {'connected_gene': 'NEK5', 'score': 12.35}, {'connected_gene': 'CTAGE3P', 'score': 12.2}, {'connected_gene': 'ATP7B', 'score': 11.69}, {'connected_gene': 'VPS36', 'score': 9.95}, {'connected_gene': 'HNRNPA1L2', 'score': 9.93}, {'connected_gene': 'PIR51896', 'score': 0.29}, {'connected_gene': 'ENSG00000217576', 'score': 0.15}]