PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000312233	[[53971909, 53972449], [53974792, 53974960], [53975521, 53975700], [53980297, 53980454], [53986306, 53986439], [53990449, 53990560], [53995463, 53995625], [54059780, 54060663], [54065773, 54065951], [54199576, 54199877]]	[[53972291, 53972449], [53974792, 53974960], [53975521, 53975700], [53980297, 53980454], [53986306, 53986439], [53990449, 53990560], [53995463, 53995625], [54059780, 54060575]]
NM_147193	[[53971905, 53972449], [53974792, 53974960], [53975521, 53975700], [53980297, 53980454], [53986306, 53986439], [53990449, 53990560], [53995463, 53995625], [54059780, 54060663], [54065773, 54065951], [54199576, 54199877]]	[[53972291, 53972449], [53974792, 53974960], [53975521, 53975700], [53980297, 53980454], [53986306, 53986439], [53990449, 53990560], [53995463, 53995625], [54059780, 54060575]]

Promoter

Chrom	Start	End	Description
chr1	54203698	54203719	CAGE_peak_3_at_GLIS1_5end
chr1	54203726	54203742	CAGE_peak_4_at_GLIS1_5end
chr1	54204818	54204870	CAGE_peak_5_at_GLIS1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I053765	53765278	53767582	0.82	[{'connected_gene': 'GLIS1', 'score': 10.2}, {'connected_gene': 'NDC1', 'score': 9.91}, {'connected_gene': 'RPL37P7', 'score': 9.9}, {'connected_gene': 'LRRC42', 'score': 9.58}, {'connected_gene': 'HSPB11', 'score': 9.58}, {'connected_gene': 'YIPF1', 'score': 4.92}, {'connected_gene': 'ENSG00000201003', 'score': 0.77}, {'connected_gene': 'GC01M053772', 'score': 0.77}]
chr1	GH01I053807	53807742	53808471	0.63	[{'connected_gene': 'GLIS1', 'score': 10.5}, {'connected_gene': 'NDC1', 'score': 0.29}, {'connected_gene': 'ENSG00000201003', 'score': 0.28}, {'connected_gene': 'GC01M053772', 'score': 0.28}]
chr1	GH01I053618	53618904	53618963	0.61	[{'connected_gene': 'GLIS1', 'score': 550.13}, {'connected_gene': 'RNU7-95P', 'score': 11.63}, {'connected_gene': 'GC01M053591', 'score': 0.31}, {'connected_gene': 'PIR52518', 'score': 0.31}, {'connected_gene': 'PIR51865', 'score': 0.23}]
chr1	GH01I053705	53705017	53706009	0.38	[{'connected_gene': 'GLIS1', 'score': 7.56}, {'connected_gene': 'RNU7-95P', 'score': 0.37}]
chr1	GH01I053681	53681581	53682637	0.88	[{'connected_gene': 'GLIS1', 'score': 5.24}, {'connected_gene': 'PIR51865', 'score': 0.44}, {'connected_gene': 'RNU7-95P', 'score': 0.44}]
chr1	GH01I053697	53697668	53698536	0.49	[{'connected_gene': 'GLIS1', 'score': 8.48}, {'connected_gene': 'RNU7-95P', 'score': 0.44}]
chr1	GH01I053730	53730896	53741752	2.35	[{'connected_gene': 'GLIS1', 'score': 563.35}, {'connected_gene': 'RNU7-95P', 'score': 10.8}, {'connected_gene': 'ENSG00000201003', 'score': 10.49}]
chr1	GH01I053655	53655890	53657528	0.43	[{'connected_gene': 'GLIS1', 'score': 4.86}, {'connected_gene': 'PIR51865', 'score': 0.37}, {'connected_gene': 'GC01M053591', 'score': 0.2}, {'connected_gene': 'PIR52518', 'score': 0.2}]
chr1	GH01I053526	53526090	53527545	0.74	[{'connected_gene': 'RNU7-95P', 'score': 10.93}, {'connected_gene': 'ENSG00000235563', 'score': 4.3}, {'connected_gene': 'PIR60882', 'score': 0.25}, {'connected_gene': 'DMRTB1', 'score': 0.2}, {'connected_gene': 'GLIS1', 'score': 0.08}]
chr1	GH01I053511	53511888	53512780	0.97	[{'connected_gene': 'RNU7-95P', 'score': 10.72}, {'connected_gene': 'DMRTB1', 'score': 0.23}, {'connected_gene': 'PIR60882', 'score': 0.21}, {'connected_gene': 'GLIS1', 'score': 0.07}]
chr1	GH01I053617	53617004	53618100	0.46	[{'connected_gene': 'RNU7-95P', 'score': 11.62}, {'connected_gene': 'GLIS1', 'score': 10.25}, {'connected_gene': 'GC01M053591', 'score': 0.31}, {'connected_gene': 'PIR52518', 'score': 0.31}, {'connected_gene': 'PIR51865', 'score': 0.22}]
chr1	GH01I053585	53583083	53584377	0.31	[{'connected_gene': 'RNU7-95P', 'score': 10.53}, {'connected_gene': 'GLIS1', 'score': 7.42}, {'connected_gene': 'GC01M053591', 'score': 0.44}, {'connected_gene': 'GC01M053578', 'score': 0.44}, {'connected_gene': 'PIR62070', 'score': 0.44}, {'connected_gene': 'PIR52518', 'score': 0.44}]
chr1	GH01I053594	53594148	53594337	0.56	[{'connected_gene': 'RNU7-95P', 'score': 10.84}, {'connected_gene': 'GC01M053591', 'score': 0.77}, {'connected_gene': 'PIR52518', 'score': 0.77}, {'connected_gene': 'PIR51865', 'score': 0.18}, {'connected_gene': 'GLIS1', 'score': 0.11}]
chr1	GH01I053584	53584408	53585955	0.46	[{'connected_gene': 'RNU7-95P', 'score': 10.53}, {'connected_gene': 'ENSG00000235563', 'score': 4.78}, {'connected_gene': 'GC01M053591', 'score': 0.44}, {'connected_gene': 'GC01M053578', 'score': 0.44}, {'connected_gene': 'PIR62070', 'score': 0.44}, {'connected_gene': 'PIR52518', 'score': 0.44}, {'connected_gene': 'GLIS1', 'score': 0.1}]
chr1	GH01I053685	53685478	53686477	0.62	[{'connected_gene': 'RNU7-95P', 'score': 0.77}, {'connected_gene': 'PIR51865', 'score': 0.39}, {'connected_gene': 'GLIS1', 'score': 0.23}]
chr1	GH01I053582	53582248	53582397	0.57	[{'connected_gene': 'RNU7-95P', 'score': 10.53}, {'connected_gene': 'GC01M053578', 'score': 0.77}, {'connected_gene': 'PIR62070', 'score': 0.77}, {'connected_gene': 'GC01M053591', 'score': 0.44}, {'connected_gene': 'PIR52518', 'score': 0.44}, {'connected_gene': 'GLIS1', 'score': 0.1}]
chr1	GH01I053583	53582769	53582798	0.43	[{'connected_gene': 'RNU7-95P', 'score': 10.53}, {'connected_gene': 'GC01M053591', 'score': 0.44}, {'connected_gene': 'GC01M053578', 'score': 0.44}, {'connected_gene': 'PIR62070', 'score': 0.44}, {'connected_gene': 'PIR52518', 'score': 0.44}, {'connected_gene': 'GLIS1', 'score': 0.1}]
chr1	GH01I053725	53725488	53725677	0.59	[{'connected_gene': 'RNU7-95P', 'score': 11.03}, {'connected_gene': 'GLIS1', 'score': 0.39}]
chr1	GH01I053529	53529903	53532299	0.38	[{'connected_gene': 'RNU7-95P', 'score': 10.93}, {'connected_gene': 'TCEANC2', 'score': 6.24}, {'connected_gene': 'PIR60882', 'score': 0.26}, {'connected_gene': 'DMRTB1', 'score': 0.19}, {'connected_gene': 'GLIS1', 'score': 0.08}]
chr1	GH01I053540	53540783	53544079	1.07	[{'connected_gene': 'PIR60882', 'score': 0.29}, {'connected_gene': 'DMRTB1', 'score': 0.18}, {'connected_gene': 'GLIS1', 'score': 0.08}]
chr1	GH01I053552	53552328	53552417	0.66	[{'connected_gene': 'PIR60882', 'score': 0.34}, {'connected_gene': 'DMRTB1', 'score': 0.16}, {'connected_gene': 'GLIS1', 'score': 0.09}]
chr1	GH01I053625	53625128	53625297	0.2	[{'connected_gene': 'GC01M053591', 'score': 0.29}, {'connected_gene': 'PIR52518', 'score': 0.29}, {'connected_gene': 'PIR51865', 'score': 0.25}, {'connected_gene': 'GLIS1', 'score': 0.14}]
chr1	GH01I053600	53600145	53601026	0.38	[{'connected_gene': 'GC01M053591', 'score': 0.39}, {'connected_gene': 'PIR52518', 'score': 0.39}, {'connected_gene': 'PIR51865', 'score': 0.19}, {'connected_gene': 'GLIS1', 'score': 0.12}]
chr1	GH01I053572	53572179	53573807	0.69	[{'connected_gene': 'PIR60882', 'score': 550.77}, {'connected_gene': 'RNU7-95P', 'score': 10.65}, {'connected_gene': 'HSPB11', 'score': 10.48}, {'connected_gene': 'DMRTB1', 'score': 0.14}, {'connected_gene': 'GLIS1', 'score': 0.1}]