PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000233336	[[113239730, 113240078], [113243493, 113243572], [113251719, 113251952], [113258782, 113258918], [113260488, 113260758], [113277858, 113278002], [113286257, 113299316]]	[[113239921, 113240078], [113243493, 113243572], [113251719, 113251952], [113258782, 113258918], [113260488, 113260758], [113277858, 113278002], [113286257, 113286372]]
ENST00000485537	[[113239775, 113240078], [113240716, 113241507]]	None
ENST00000476615	[[113258862, 113258918], [113260488, 113260758], [113277858, 113278257]]	None
ENST00000460450	[[113279727, 113280144], [113286257, 113289988]]	None
NM_153712	[[113239742, 113240078], [113243493, 113243572], [113251719, 113251952], [113258782, 113258918], [113260488, 113260758], [113277858, 113278002], [113286257, 113290223]]	[[113239921, 113240078], [113243493, 113243572], [113251719, 113251952], [113258782, 113258918], [113260488, 113260758], [113277858, 113278002], [113286257, 113286372]]

Promoter

Chrom	Start	End	Description
chr2	113239684	113239701	CAGE_peak_3_at_TTL_5end
chr2	113239710	113239753	CAGE_peak_1_at_TTL_5end
chr2	113239756	113239773	CAGE_peak_2_at_TTL_5end
chr2	113251697	113251704	CAGE_peak_16_at_TTL_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I112535	112535053	112535380	0.52	[{'connected_gene': 'POLR1B', 'score': 6.26}, {'connected_gene': 'IL1A', 'score': 1.85}, {'connected_gene': 'TTL', 'score': 0.23}]
chr2	GH02I112509	112509601	112509800	0.49	[{'connected_gene': 'POLR1B', 'score': 11.06}, {'connected_gene': 'TTL', 'score': 0.31}]
chr2	GH02I112541	112541120	112544038	2.09	[{'connected_gene': 'POLR1B', 'score': 601.99}, {'connected_gene': 'LOC105373562', 'score': 550.77}, {'connected_gene': 'CHCHD5', 'score': 24.79}, {'connected_gene': 'ANAPC1', 'score': 20.56}, {'connected_gene': 'RGPD8', 'score': 14.24}, {'connected_gene': 'RPS20P11', 'score': 11.87}, {'connected_gene': 'TMEM87B', 'score': 11.46}, {'connected_gene': 'ENSG00000207383', 'score': 11.15}, {'connected_gene': 'ENSG00000243389', 'score': 11.12}, {'connected_gene': 'ZC3H8', 'score': 11.09}, {'connected_gene': 'PIR56853', 'score': 0.28}, {'connected_gene': 'TTL', 'score': 0.21}]
chr2	GH02I112493	112493414	112494917	0.67	[{'connected_gene': 'RGPD8', 'score': 20.42}, {'connected_gene': 'POLR1B', 'score': 16.31}, {'connected_gene': 'CHCHD5', 'score': 9.8}, {'connected_gene': 'IL37', 'score': 9.09}, {'connected_gene': 'TTL', 'score': 0.39}]
chr2	GH02I112890	112890611	112892533	1.08	[{'connected_gene': 'IL1B', 'score': 61.56}, {'connected_gene': 'IL1RN', 'score': 28.13}, {'connected_gene': 'IL36G', 'score': 13.21}, {'connected_gene': 'IL1A', 'score': 11.69}, {'connected_gene': 'CKAP2L', 'score': 10.98}, {'connected_gene': 'RNU6-1180P', 'score': 9.8}, {'connected_gene': 'IL36B', 'score': 7.23}, {'connected_gene': 'IL36RN', 'score': 1.51}, {'connected_gene': 'TTL', 'score': 1.12}, {'connected_gene': 'PIR39579', 'score': 0.44}, {'connected_gene': 'LOC105373563', 'score': 0.37}]
chr2	GH02I112480	112480470	112484153	2.04	[{'connected_gene': 'TTL', 'score': 556.33}, {'connected_gene': 'RGPD8', 'score': 31.52}, {'connected_gene': 'POLR1B', 'score': 11.37}, {'connected_gene': 'ENSG00000207383', 'score': 10.98}, {'connected_gene': 'CHCHD5', 'score': 10.97}, {'connected_gene': 'ENSG00000243389', 'score': 10.97}]