PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000296096	[[27371871, 27372223], [27372990, 27373233], [27375555, 27376378]]	[[27372001, 27372223], [27372990, 27373233], [27375555, 27375735]]
ENST00000407815	[[27371892, 27372223], [27372576, 27372817]]	None
NM_175769	[[27371944, 27372223], [27372990, 27373233], [27375555, 27375819]]	[[27372001, 27372223], [27372990, 27373233], [27375555, 27375735]]

Promoter

Chrom	Start	End	Description
chr2	27371866	27371878	CAGE_peak_3_at_TCF23_5end
chr2	27371879	27371907	CAGE_peak_1_at_TCF23_5end
chr2	27371919	27371935	CAGE_peak_2_at_TCF23_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I027122	27122818	27124512	1.91	[{'connected_gene': 'ABHD1', 'score': 550.77}, {'connected_gene': 'TCF23', 'score': 11.5}, {'connected_gene': 'ATRAID', 'score': 10.8}, {'connected_gene': 'SLC5A6', 'score': 10.8}, {'connected_gene': 'KHK', 'score': 10.58}, {'connected_gene': 'EMILIN1', 'score': 10.55}, {'connected_gene': 'CAD', 'score': 10.47}, {'connected_gene': 'CENPA', 'score': 7.32}, {'connected_gene': 'SLC35F6', 'score': 5.31}, {'connected_gene': 'CGREF1', 'score': 0.77}]
chr2	GH02I027263	27263000	27263201	1.54	[{'connected_gene': 'SLC30A3', 'score': 550.39}, {'connected_gene': 'UCN', 'score': 11.77}, {'connected_gene': 'MPV17', 'score': 11.73}, {'connected_gene': 'CAD', 'score': 11.05}, {'connected_gene': 'ATRAID', 'score': 11.03}, {'connected_gene': 'SLC5A6', 'score': 11.03}, {'connected_gene': 'GTF3C2-AS1', 'score': 10.6}, {'connected_gene': 'TCF23', 'score': 10.57}, {'connected_gene': 'GTF3C2', 'score': 10.56}, {'connected_gene': 'PRR30', 'score': 10.56}, {'connected_gene': 'PREB', 'score': 10.31}, {'connected_gene': 'DNAJC5G', 'score': 0.39}]
chr2	GH02I027264	27263207	27263266	0.99	[{'connected_gene': 'SLC30A3', 'score': 550.39}, {'connected_gene': 'UCN', 'score': 11.77}, {'connected_gene': 'MPV17', 'score': 11.73}, {'connected_gene': 'CAD', 'score': 11.05}, {'connected_gene': 'ATRAID', 'score': 11.03}, {'connected_gene': 'SLC5A6', 'score': 11.03}, {'connected_gene': 'GTF3C2-AS1', 'score': 10.6}, {'connected_gene': 'TCF23', 'score': 10.57}, {'connected_gene': 'GTF3C2', 'score': 10.56}, {'connected_gene': 'PRR30', 'score': 10.56}, {'connected_gene': 'PREB', 'score': 10.31}, {'connected_gene': 'CENPA', 'score': 5.39}, {'connected_gene': 'DNAJC5G', 'score': 0.39}]
chr2	GH02I027169	27169799	27172737	1.18	[{'connected_gene': 'ATRAID', 'score': 22.62}, {'connected_gene': 'GTF3C2', 'score': 16.38}, {'connected_gene': 'TCF23', 'score': 12.35}, {'connected_gene': 'PRR30', 'score': 12.31}, {'connected_gene': 'PREB', 'score': 11.7}, {'connected_gene': 'SLC5A6', 'score': 11.36}, {'connected_gene': 'ABHD1', 'score': 11.18}, {'connected_gene': 'CAD', 'score': 10.98}, {'connected_gene': 'SLC30A3', 'score': 10.51}, {'connected_gene': 'DNAJC5G', 'score': 10.51}, {'connected_gene': 'CGREF1', 'score': 10.47}, {'connected_gene': 'KHK', 'score': 10.42}, {'connected_gene': 'EMILIN1', 'score': 10.4}, {'connected_gene': 'MPV17', 'score': 9.72}, {'connected_gene': 'GTF3C2-AS1', 'score': 9.45}, {'connected_gene': 'KRTCAP3', 'score': 4.73}, {'connected_gene': 'ENSG00000236099', 'score': 0.39}, {'connected_gene': 'GC02P027132', 'score': 0.28}]
chr2	GH02I027090	27090630	27097200	1.44	[{'connected_gene': 'KHK', 'score': 36.65}, {'connected_gene': 'ABHD1', 'score': 11.1}, {'connected_gene': 'CGREF1', 'score': 11.1}, {'connected_gene': 'ATRAID', 'score': 11.03}, {'connected_gene': 'SLC5A6', 'score': 11.03}, {'connected_gene': 'CAD', 'score': 10.92}, {'connected_gene': 'PRR30', 'score': 10.9}, {'connected_gene': 'TCF23', 'score': 10.87}, {'connected_gene': 'PREB', 'score': 10.8}, {'connected_gene': 'AGBL5-AS1', 'score': 10.44}, {'connected_gene': 'TRIM54', 'score': 10.43}, {'connected_gene': 'UCN', 'score': 10.42}, {'connected_gene': 'MPV17', 'score': 10.42}, {'connected_gene': 'AGBL5', 'score': 10.41}, {'connected_gene': 'SLC30A3', 'score': 10.2}, {'connected_gene': 'DNAJC5G', 'score': 10.2}, {'connected_gene': 'MAPRE3', 'score': 9.96}, {'connected_gene': 'LOC100129724', 'score': 9.81}, {'connected_gene': 'SNX17', 'score': 8.97}, {'connected_gene': 'ZNF513', 'score': 8.88}, {'connected_gene': 'GC02P027111', 'score': 0.37}]
chr2	GH02I027153	27153952	27155187	0.2	[{'connected_gene': 'IFT172', 'score': 4.36}, {'connected_gene': 'ENSG00000236099', 'score': 0.77}, {'connected_gene': 'TCF23', 'score': 0.44}, {'connected_gene': 'GC02P027132', 'score': 0.34}]
chr2	GH02I027148	27148979	27149038	0.73	[{'connected_gene': 'TCF23', 'score': 550.77}, {'connected_gene': 'ENSG00000236099', 'score': 0.39}, {'connected_gene': 'GC02P027132', 'score': 0.37}]