PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000343150	[[90340433, 90341313], [90342508, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346307]]	[[90342518, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346022]]
ENST00000340342	[[90341023, 90341168], [90342508, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346301]]	[[90342518, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346022]]
ENST00000375894	[[90341028, 90341168], [90342948, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90345988]]	None
ENST00000495822	[[90341048, 90341168], [90342508, 90342617], [90343632, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346308]]	None
ENST00000342020	[[90341054, 90341168], [90342508, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343912]]	[[90342518, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343781]]
ENST00000482054	[[90341054, 90341223], [90342508, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344595]]	None
NM_001257972	[[90340973, 90341164], [90342508, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346384]]	[[90342518, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346022]]
NM_001257973	[[90340973, 90341168], [90342508, 90342617], [90343632, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346384]]	[[90343649, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346022]]
NM_145918	[[90340973, 90341168], [90342508, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346384]]	[[90342518, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346022]]
NM_001257971	[[90340973, 90341223], [90342508, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346384]]	[[90342518, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346022]]
NM_001912	[[90340973, 90341313], [90342508, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346384]]	[[90342518, 90342644], [90342941, 90343064], [90343164, 90343311], [90343499, 90343724], [90344487, 90344650], [90345295, 90345413], [90345922, 90346022]]

Promoter

Chrom	Start	End	Description
chr9	90341025	90341041	CAGE_peak_1_at_CTSL1_5end
chr9	90341260	90341289	CAGE_peak_5_at_CTSL1_5end
chr9	90342509	90342530	CAGE_peak_3_at_CTSL1_5end
chr9	90342545	90342564	CAGE_peak_2_at_CTSL1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I087554	87554026	87557399	1.34	[{'connected_gene': 'DAPK1', 'score': 27.05}, {'connected_gene': 'CTSL', 'score': 4.03}, {'connected_gene': 'DAPK1-IT1', 'score': 0.77}, {'connected_gene': 'GC09P087601', 'score': 0.25}]
chr9	GH09I087564	87564727	87565549	0.85	[{'connected_gene': 'DAPK1', 'score': 21.67}, {'connected_gene': 'CTSL', 'score': 3.07}, {'connected_gene': 'DAPK1-IT1', 'score': 0.39}, {'connected_gene': 'GC09P087601', 'score': 0.28}]
chr9	GH09I087592	87592091	87602399	1.66	[{'connected_gene': 'DAPK1', 'score': 14.98}, {'connected_gene': 'CTSL', 'score': 1.93}, {'connected_gene': 'GC09P087601', 'score': 0.77}, {'connected_gene': 'DAPK1-IT1', 'score': 0.26}]
chr9	GH09I087404	87404759	87411300	1.58	[{'connected_gene': 'DAPK1', 'score': 13.2}, {'connected_gene': 'CTSL', 'score': 5.03}, {'connected_gene': 'GC09P087394', 'score': 0.39}, {'connected_gene': 'ENSG00000228373', 'score': 0.37}]
chr9	GH09I087611	87611337	87615212	1.55	[{'connected_gene': 'DAPK1', 'score': 17.46}, {'connected_gene': 'CTSL', 'score': 4.94}, {'connected_gene': 'GC09P087601', 'score': 0.39}, {'connected_gene': 'GC09P087714', 'score': 0.15}]
chr9	GH09I087604	87603761	87608354	1.3	[{'connected_gene': 'DAPK1', 'score': 13.45}, {'connected_gene': 'CTSL', 'score': 2.64}, {'connected_gene': 'GC09P087601', 'score': 0.77}, {'connected_gene': 'GC09P087714', 'score': 0.14}]
chr9	GH09I087479	87479566	87480633	1.34	[{'connected_gene': 'DAPK1', 'score': 7.5}, {'connected_gene': 'CTSL', 'score': 2.36}, {'connected_gene': 'GC09M087454', 'score': 0.39}]
chr9	GH09I087494	87494530	87496195	1.03	[{'connected_gene': 'DAPK1', 'score': 563.55}, {'connected_gene': 'CTSL', 'score': 3.44}, {'connected_gene': 'GC09M087454', 'score': 0.31}]
chr9	GH09I087810	87810719	87811037	1.17	[{'connected_gene': 'CTSL', 'score': 1.79}, {'connected_gene': 'ELF2P3', 'score': 0.44}, {'connected_gene': 'LOC100420576', 'score': 0.39}, {'connected_gene': 'FBP2P1', 'score': 0.31}, {'connected_gene': 'CTSL3P', 'score': 0.28}]
chr9	GH09I087787	87787832	87788077	0.53	[{'connected_gene': 'CTSL', 'score': 17.83}, {'connected_gene': 'DAPK1', 'score': 1.79}, {'connected_gene': 'CTSL3P', 'score': 0.37}, {'connected_gene': 'ELF2P3', 'score': 0.31}]
chr9	GH09I087791	87791654	87794439	1.52	[{'connected_gene': 'CTSL', 'score': 15.77}, {'connected_gene': 'ENSG00000214888', 'score': 4.79}, {'connected_gene': 'DAPK1', 'score': 3.43}, {'connected_gene': 'ELF2P3', 'score': 0.34}, {'connected_gene': 'CTSL3P', 'score': 0.34}]
chr9	GH09I087795	87795801	87796868	1.1	[{'connected_gene': 'CTSL', 'score': 15.82}, {'connected_gene': 'ENSG00000214888', 'score': 5.15}, {'connected_gene': 'DAPK1', 'score': 2.29}, {'connected_gene': 'ELF2P3', 'score': 0.34}, {'connected_gene': 'CTSL3P', 'score': 0.34}]
chr9	GH09I087812	87812546	87813200	0.99	[{'connected_gene': 'CTSL', 'score': 17.52}, {'connected_gene': 'DAPK1', 'score': 1.62}, {'connected_gene': 'ELF2P3', 'score': 0.77}, {'connected_gene': 'LOC100420576', 'score': 0.44}, {'connected_gene': 'FBP2P1', 'score': 0.34}, {'connected_gene': 'CTSL3P', 'score': 0.26}]
chr9	GH09I087701	87701466	87704922	0.62	[{'connected_gene': 'CTSL', 'score': 18.26}, {'connected_gene': 'GC09P087714', 'score': 0.39}, {'connected_gene': 'GC09P087601', 'score': 0.15}, {'connected_gene': 'DAPK1', 'score': 0.08}]
chr9	GH09I087685	87685211	87686669	1.03	[{'connected_gene': 'CTSL', 'score': 18.04}, {'connected_gene': 'GC09P087714', 'score': 0.31}, {'connected_gene': 'GC09P087601', 'score': 0.18}, {'connected_gene': 'DAPK1', 'score': 0.09}]
chr9	GH09I087722	87722195	87722941	0.5	[{'connected_gene': 'CTSL', 'score': 24.16}, {'connected_gene': 'DAPK1', 'score': 3.29}, {'connected_gene': 'GC09P087714', 'score': 0.44}]
chr9	GH09I087725	87725218	87728478	2.19	[{'connected_gene': 'CTSL', 'score': 560.35}, {'connected_gene': 'NXNL2', 'score': 5.21}, {'connected_gene': 'LOC649166', 'score': 0.39}, {'connected_gene': 'GC09P087714', 'score': 0.39}]
chr9	GH09I087709	87709126	87709275	0.38	[{'connected_gene': 'CTSL', 'score': 5.44}, {'connected_gene': 'GC09P087714', 'score': 0.44}, {'connected_gene': 'GC09P087601', 'score': 0.14}]
chr9	GH09I087710	87709642	87717577	1.81	[{'connected_gene': 'GC09P087714', 'score': 550.77}, {'connected_gene': 'CTSL', 'score': 30.71}, {'connected_gene': 'LOC649166', 'score': 11.86}, {'connected_gene': 'NXNL2', 'score': 4.39}, {'connected_gene': 'DAPK1', 'score': 3.73}, {'connected_gene': 'GC09P087601', 'score': 0.14}]