PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000508784	[[146678778, 146682750], [146684241, 146684274], [146686139, 146686317], [146686698, 146686890], [146695657, 146695824], [146696940, 146697112], [146700525, 146700663], [146744573, 146744677], [146767107, 146767165], [146770473, 146770713], [146791396, 146791630], [146806829, 146807310], [146813394, 146813567], [146823317, 146824367], [146859516, 146859787]]	[[146684258, 146684274], [146686139, 146686317], [146686698, 146686890], [146695657, 146695824], [146696940, 146697112], [146700525, 146700663], [146744573, 146744677], [146767107, 146767165], [146770473, 146770713], [146791396, 146791630], [146806829, 146807310], [146813394, 146813567], [146823317, 146824367], [146859516, 146859559]]
ENST00000513320	[[146681880, 146682750], [146684241, 146684274], [146686139, 146686317], [146686698, 146686890], [146695657, 146695824], [146696940, 146697112], [146700525, 146700663], [146744573, 146744677], [146767107, 146767165], [146770473, 146770713], [146791396, 146791630], [146806829, 146807310], [146813394, 146813567], [146859516, 146859641]]	[[146684258, 146684274], [146686139, 146686317], [146686698, 146686890], [146695657, 146695824], [146696940, 146697112], [146700525, 146700663], [146744573, 146744677], [146767107, 146767165], [146770473, 146770713], [146791396, 146791630], [146806829, 146807310], [146813394, 146813567], [146859516, 146859559]]
ENST00000379448	[[146681889, 146682750], [146684241, 146684274], [146686130, 146686317], [146686698, 146686890], [146695657, 146695824], [146696940, 146697112], [146700525, 146700663], [146744573, 146744677], [146767107, 146767165], [146770473, 146770713], [146791396, 146791630], [146806829, 146807310], [146813394, 146813567], [146823317, 146824367], [146859516, 146859623]]	[[146686135, 146686317], [146686698, 146686890], [146695657, 146695824], [146696940, 146697112], [146700525, 146700663], [146744573, 146744677], [146767107, 146767165], [146770473, 146770713], [146791396, 146791630], [146806829, 146807310], [146813394, 146813567], [146823317, 146824367], [146859516, 146859559]]
ENST00000508995	[[146791452, 146791630], [146807184, 146807310], [146813394, 146813567]]	None
ENST00000513840	[[146797647, 146798010], [146806829, 146806900]]	None
ENST00000503462	[[146682280, 146682750], [146686139, 146686207]]	[[146682280, 146682750], [146686139, 146686207]]
ENST00000511659	[[146682433, 146682750], [146686130, 146686317], [146686698, 146686890], [146695657, 146695819]]	[[146686135, 146686317], [146686698, 146686890], [146695657, 146695819]]
ENST00000515386	[[146685840, 146686317], [146686698, 146686890], [146695657, 146695714]]	None
ENST00000509940	[[146740989, 146741248], [146744573, 146744677], [146767107, 146767144]]	None
ENST00000511534	[[146770502, 146770713], [146791396, 146791630], [146791870, 146791919]]	None
NM_178835	[[146678778, 146682750], [146684241, 146684274], [146686130, 146686317], [146686698, 146686890], [146695657, 146695824], [146696940, 146697112], [146700525, 146700663], [146744573, 146744677], [146767107, 146767165], [146770473, 146770713], [146791396, 146791630], [146806829, 146807310], [146813394, 146813567], [146823317, 146824367], [146859516, 146860112]]	[[146686135, 146686317], [146686698, 146686890], [146695657, 146695824], [146696940, 146697112], [146700525, 146700663], [146744573, 146744677], [146767107, 146767165], [146770473, 146770713], [146791396, 146791630], [146806829, 146807310], [146813394, 146813567], [146823317, 146824367], [146859516, 146859559]]
NM_001306215	[[146678778, 146682750], [146684241, 146684274], [146686139, 146686317], [146686698, 146686890], [146695657, 146695824], [146696940, 146697112], [146700525, 146700663], [146744573, 146744677], [146767107, 146767165], [146770473, 146770713], [146791396, 146791630], [146806829, 146807310], [146813394, 146813567], [146823317, 146824367], [146859516, 146860112]]	[[146684258, 146684274], [146686139, 146686317], [146686698, 146686890], [146695657, 146695824], [146696940, 146697112], [146700525, 146700663], [146744573, 146744677], [146767107, 146767165], [146770473, 146770713], [146791396, 146791630], [146806829, 146807310], [146813394, 146813567], [146823317, 146824367], [146859516, 146859559]]

Promoter

Chrom	Start	End	Description
chr4	146859588	146859615	CAGE_peak_4_at_ZNF827_5end
chr4	146859626	146859669	CAGE_peak_2_at_ZNF827_5end
chr4	146859887	146859921	CAGE_peak_3_at_ZNF827_5end
chr4	146859927	146860055	CAGE_peak_1_at_ZNF827_5end
chr4	146860163	146860188	CAGE_peak_5_at_ZNF827_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I145625	145625771	145626058	0.46	[{'connected_gene': 'NCOA4P3', 'score': 550.77}, {'connected_gene': 'ENSG00000248356', 'score': 12.26}, {'connected_gene': 'C4orf51', 'score': 10.57}, {'connected_gene': 'ZNF827', 'score': 1.39}, {'connected_gene': 'MMAA', 'score': 0.44}]
chr4	GH04I145778	145778837	145780127	0.2	[{'connected_gene': 'C4orf51', 'score': 10.15}, {'connected_gene': 'GC04M145759', 'score': 0.37}, {'connected_gene': 'ENSG00000279481', 'score': 0.23}, {'connected_gene': 'ZNF827', 'score': 0.1}]
chr4	GH04I145769	145769601	145770200	0.64	[{'connected_gene': 'OTUD4', 'score': 21.31}, {'connected_gene': 'ENSG00000248356', 'score': 13.58}, {'connected_gene': 'SLC10A7', 'score': 12.19}, {'connected_gene': 'LSM6', 'score': 9.82}, {'connected_gene': 'GC04M145759', 'score': 0.44}, {'connected_gene': 'ENSG00000279481', 'score': 0.21}, {'connected_gene': 'C4orf51', 'score': 0.17}, {'connected_gene': 'ZNF827', 'score': 0.1}]
chr4	GH04I145812	145812255	145813860	0.97	[{'connected_gene': 'OTUD4', 'score': 29.87}, {'connected_gene': 'ENSG00000248356', 'score': 13.55}, {'connected_gene': 'SLC10A7', 'score': 12.19}, {'connected_gene': 'ANAPC10', 'score': 10.03}, {'connected_gene': 'LSM6', 'score': 9.83}, {'connected_gene': 'ENSG00000279481', 'score': 0.37}, {'connected_gene': 'GC04M145759', 'score': 0.23}, {'connected_gene': 'ZNF827', 'score': 0.13}]
chr4	GH04I145824	145824403	145824773	0.31	[{'connected_gene': 'MMAA', 'score': 4.24}, {'connected_gene': 'ENSG00000279481', 'score': 0.44}, {'connected_gene': 'GC04M145759', 'score': 0.21}, {'connected_gene': 'ZNF827', 'score': 0.14}]
chr4	GH04I145934	145934299	145940489	2.03	[{'connected_gene': 'ZNF827', 'score': 561.83}, {'connected_gene': 'GC04M145938', 'score': 550.77}, {'connected_gene': 'SLC10A7', 'score': 13.35}, {'connected_gene': 'LSM6', 'score': 10.03}, {'connected_gene': 'PIR42534', 'score': 0.39}]
chr4	GH04I146273	146273244	146273805	0.84	[{'connected_gene': 'ZNF827', 'score': 1.91}, {'connected_gene': 'LSM6', 'score': 1.85}, {'connected_gene': 'LOC105377472', 'score': 0.34}, {'connected_gene': 'ENSG00000251010', 'score': 0.29}, {'connected_gene': 'SLC10A7', 'score': 0.07}]
chr4	GH04I145842	145842749	145844169	0.66	[{'connected_gene': 'ZNF827', 'score': 8.12}, {'connected_gene': 'ENSG00000251687', 'score': 0.39}, {'connected_gene': 'PIR42534', 'score': 0.18}]
chr4	GH04I145886	145886873	145888658	0.74	[{'connected_gene': 'ZNF827', 'score': 9.4}, {'connected_gene': 'PIR42534', 'score': 0.28}, {'connected_gene': 'ENSG00000251687', 'score': 0.23}]
chr4	GH04I145880	145880489	145883641	0.69	[{'connected_gene': 'ZNF827', 'score': 8.39}, {'connected_gene': 'PIR42534', 'score': 0.26}, {'connected_gene': 'ENSG00000251687', 'score': 0.25}]
chr4	GH04I145803	145803424	145810335	1.64	[{'connected_gene': 'ENSG00000251687', 'score': 11.85}, {'connected_gene': 'C4orf51', 'score': 10.15}, {'connected_gene': 'ZNF827', 'score': 5.04}, {'connected_gene': 'ENSG00000279481', 'score': 0.31}, {'connected_gene': 'GC04M145759', 'score': 0.25}]
chr4	GH04I146269	146269388	146269629	0.73	[{'connected_gene': 'ENSG00000251010', 'score': 10.92}, {'connected_gene': 'REELD1', 'score': 9.85}, {'connected_gene': 'POU4F2', 'score': 9.32}, {'connected_gene': 'ZNF827', 'score': 1.53}, {'connected_gene': 'LSM6', 'score': 1.49}, {'connected_gene': 'LOC105377472', 'score': 0.31}, {'connected_gene': 'SLC10A7', 'score': 0.07}]
chr4	GH04I146271	146271501	146271752	0.73	[{'connected_gene': 'ENSG00000251010', 'score': 11.17}, {'connected_gene': 'ZNF827', 'score': 1.45}, {'connected_gene': 'SLC10A7', 'score': 1.25}, {'connected_gene': 'LOC105377472', 'score': 0.34}]
chr4	GH04I145814	145814302	145816392	0.66	[{'connected_gene': 'ENSG00000279481', 'score': 0.37}, {'connected_gene': 'GC04M145759', 'score': 0.22}, {'connected_gene': 'ZNF827', 'score': 0.13}]
chr4	GH04I145919	145919335	145921208	0.66	[{'connected_gene': 'PIR42534', 'score': 0.44}, {'connected_gene': 'ZNF827', 'score': 0.37}, {'connected_gene': 'ENSG00000251687', 'score': 0.17}]
chr4	GH04I145823	145823562	145824270	0.46	[{'connected_gene': 'ENSG00000279481', 'score': 0.44}, {'connected_gene': 'GC04M145759', 'score': 0.21}, {'connected_gene': 'ZNF827', 'score': 0.14}]
chr4	GH04I145929	145929810	145931654	0.56	[{'connected_gene': 'PIR42534', 'score': 0.77}, {'connected_gene': 'ZNF827', 'score': 0.44}]
chr4	GH04I145818	145818168	145821671	0.58	[{'connected_gene': 'ENSG00000279481', 'score': 0.39}, {'connected_gene': 'GC04M145759', 'score': 0.22}, {'connected_gene': 'ZNF827', 'score': 0.13}]
chr4	GH04I145907	145907401	145907600	0.2	[{'connected_gene': 'PIR42534', 'score': 0.37}, {'connected_gene': 'ZNF827', 'score': 0.29}, {'connected_gene': 'ENSG00000251687', 'score': 0.19}]
chr4	GH04I145908	145908785	145910477	0.76	[{'connected_gene': 'PIR42534', 'score': 0.37}, {'connected_gene': 'ZNF827', 'score': 0.31}, {'connected_gene': 'ENSG00000251687', 'score': 0.18}]
chr4	GH04I145827	145827978	145831200	0.92	[{'connected_gene': 'ENSG00000279481', 'score': 0.77}, {'connected_gene': 'GC04M145759', 'score': 0.2}, {'connected_gene': 'ZNF827', 'score': 0.14}]
chr4	GH04I145839	145839269	145839418	0.31	[{'connected_gene': 'ENSG00000251687', 'score': 0.44}, {'connected_gene': 'PIR42534', 'score': 0.17}, {'connected_gene': 'ZNF827', 'score': 0.15}]