PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000468383	[[139024202, 139024252], [139030246, 139030541]]	None
ENST00000481123	[[139025195, 139025365], [139030246, 139030536]]	None
ENST00000482181	[[139025236, 139025345], [139030246, 139030523]]	None
ENST00000488886	[[139025322, 139025365], [139029642, 139029736], [139030246, 139030541]]	None
ENST00000297534	[[139025877, 139026268], [139030246, 139031065]]	[[139026130, 139026268], [139030246, 139030450]]
NR_073060	[[139025195, 139025345], [139030246, 139031065]]	None
NR_073059	[[139025195, 139025365], [139030246, 139031065]]	None
NR_073058	[[139025195, 139025365], [139029642, 139029736], [139030246, 139031065]]	None
NM_197964	[[139025877, 139026268], [139030246, 139031065]]	[[139026130, 139026268], [139030246, 139030450]]

Promoter

Chrom	Start	End	Description
chr7	139025180	139025200	CAGE_peak_3_at_C7orf55_5end
chr7	139025204	139025245	CAGE_peak_1_at_C7orf55_5end
chr7	139025875	139025904	CAGE_peak_2_at_C7orf55_5end,CAGE_peak_6_at_LUC7L2_5end
chr7	139025909	139025927	CAGE_peak_4_at_C7orf55_5end,CAGE_peak_7_at_LUC7L2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I139339	139339352	139343216	2.36	[{'connected_gene': 'LUC7L2', 'score': 607.99}, {'connected_gene': 'GC07P139357', 'score': 550.77}, {'connected_gene': 'C7orf55-LUC7L2', 'score': 550.77}, {'connected_gene': 'FMC1', 'score': 550.77}, {'connected_gene': 'TRR-CCT4-1', 'score': 550.77}, {'connected_gene': 'GC07P139356', 'score': 550.77}, {'connected_gene': 'UBN2', 'score': 43.88}, {'connected_gene': 'ENSG00000273391', 'score': 19.77}, {'connected_gene': 'KLRG2', 'score': 14.19}, {'connected_gene': 'TTC26', 'score': 9.98}, {'connected_gene': 'LOC100499191', 'score': 9.93}]
chr7	GH07I139375	139374321	139374536	0.4	[{'connected_gene': 'FMC1', 'score': 11.6}, {'connected_gene': 'LUC7L2', 'score': 11.6}, {'connected_gene': 'GC07P139363', 'score': 0.39}, {'connected_gene': 'C7orf55-LUC7L2', 'score': 0.29}, {'connected_gene': 'LOC100129148', 'score': 0.23}]
chr7	GH07I139374	139374718	139375421	0.2	[{'connected_gene': 'ENSG00000273391', 'score': 19.77}, {'connected_gene': 'LUC7L2', 'score': 11.6}, {'connected_gene': 'FMC1', 'score': 11.59}, {'connected_gene': 'GC07P139363', 'score': 0.39}, {'connected_gene': 'C7orf55-LUC7L2', 'score': 0.29}, {'connected_gene': 'LOC100129148', 'score': 0.23}]
chr7	GH07I139394	139394615	139394744	0.38	[{'connected_gene': 'ENSG00000273391', 'score': 20.04}, {'connected_gene': 'LUC7L2', 'score': 10.69}, {'connected_gene': 'FMC1', 'score': 10.68}, {'connected_gene': 'LOC100129148', 'score': 0.29}, {'connected_gene': 'GC07P139363', 'score': 0.29}, {'connected_gene': 'C7orf55-LUC7L2', 'score': 0.23}]
chr7	GH07I139369	139369185	139371591	0.52	[{'connected_gene': 'ENSG00000273391', 'score': 19.8}, {'connected_gene': 'FMC1', 'score': 12.0}, {'connected_gene': 'LUC7L2', 'score': 12.0}, {'connected_gene': 'GC07P139363', 'score': 0.44}, {'connected_gene': 'C7orf55-LUC7L2', 'score': 0.31}, {'connected_gene': 'LOC100129148', 'score': 0.22}]
chr7	GH07I139372	139372236	139374170	0.31	[{'connected_gene': 'ENSG00000273391', 'score': 19.56}, {'connected_gene': 'FMC1', 'score': 11.6}, {'connected_gene': 'LUC7L2', 'score': 11.6}, {'connected_gene': 'GC07P139363', 'score': 0.39}, {'connected_gene': 'C7orf55-LUC7L2', 'score': 0.29}, {'connected_gene': 'LOC100129148', 'score': 0.23}]
chr7	GH07I139367	139367367	139368075	0.59	[{'connected_gene': 'ENSG00000273391', 'score': 19.84}, {'connected_gene': 'FMC1', 'score': 12.02}, {'connected_gene': 'LUC7L2', 'score': 12.02}, {'connected_gene': 'GC07P139363', 'score': 0.77}, {'connected_gene': 'C7orf55-LUC7L2', 'score': 0.31}, {'connected_gene': 'LOC100129148', 'score': 0.22}]
chr7	GH07I139403	139403153	139403998	0.38	[{'connected_gene': 'ENSG00000273391', 'score': 20.17}, {'connected_gene': 'FMC1', 'score': 11.12}, {'connected_gene': 'LUC7L2', 'score': 11.12}, {'connected_gene': 'LOC100129148', 'score': 0.34}, {'connected_gene': 'GC07P139363', 'score': 0.26}, {'connected_gene': 'C7orf55-LUC7L2', 'score': 0.21}]