PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000503687	[[66093944, 66094195], [66103239, 66103418], [66103842, 66103916], [66236869, 66237065], [66238677, 66238797], [66240213, 66240380], [66248661, 66248828], [66260497, 66260579], [66261762, 66261879], [66262360, 66262493], [66264309, 66264401], [66270126, 66270383], [66273872, 66276174]]	[[66094051, 66094195], [66103239, 66103418], [66103842, 66103916], [66236869, 66237065], [66238677, 66238783]]
ENST00000275532	[[66093867, 66094195], [66098261, 66098431], [66103239, 66103418], [66103842, 66108038]]	[[66094051, 66094195], [66098261, 66098431], [66103239, 66103418], [66103842, 66104219]]
ENST00000443322	[[66093929, 66094195], [66098261, 66098431], [66103239, 66103418], [66103842, 66104215], [66105380, 66105552]]	[[66094051, 66094195], [66098261, 66098431], [66103239, 66103418], [66103842, 66104215], [66105380, 66105381]]
ENST00000449064	[[66093944, 66094195], [66103239, 66103418], [66103842, 66103916]]	[[66094051, 66094195], [66103239, 66103418], [66103842, 66103916]]
ENST00000510829	[[66205642, 66205779], [66236869, 66237065], [66240213, 66240380], [66248661, 66248828], [66260497, 66260579], [66262360, 66262493], [66264309, 66264401], [66270126, 66270383], [66273872, 66276446]]	[[66236886, 66237065], [66240213, 66240380], [66248661, 66248828], [66260497, 66260579], [66262360, 66262493], [66264309, 66264401], [66270126, 66270383], [66273872, 66274271]]
ENST00000380828	[[66205642, 66205779], [66236869, 66237065], [66238677, 66238779], [66238914, 66238932], [66240213, 66240380], [66248661, 66248828], [66260497, 66260579], [66262360, 66262493], [66264309, 66264401], [66270126, 66270383], [66273872, 66276446]]	[[66236886, 66237065], [66238677, 66238779], [66238914, 66238932], [66240213, 66240380], [66248661, 66248828], [66260497, 66260579], [66262360, 66262493], [66264309, 66264401], [66270126, 66270383], [66273872, 66274271]]
ENST00000451741	[[66205719, 66205779], [66233817, 66234012], [66236869, 66237065], [66240213, 66240380], [66248661, 66248828], [66260497, 66260579], [66262360, 66262493], [66264309, 66264401], [66270126, 66270383], [66273872, 66274425]]	[[66236886, 66237065], [66240213, 66240380], [66248661, 66248828], [66260497, 66260579], [66262360, 66262493], [66264309, 66264401], [66270126, 66270383], [66273872, 66274271]]
NM_001167961	[[66093867, 66094195], [66098261, 66098431], [66103239, 66103418], [66103842, 66104215], [66105380, 66108216]]	[[66094051, 66094195], [66098261, 66098431], [66103239, 66103418], [66103842, 66104215], [66105380, 66105381]]
NM_153033	[[66093867, 66094195], [66098261, 66098431], [66103239, 66103418], [66103842, 66108216]]	[[66094051, 66094195], [66098261, 66098431], [66103239, 66103418], [66103842, 66104219]]

Promoter

Chrom	Start	End	Description
chr7	66093851	66093880	CAGE_peak_5_at_KCTD7_5end,CAGE_peak_8_at_RABGEF1_5end
chr7	66093884	66093905	CAGE_peak_6_at_KCTD7_5end,CAGE_peak_9_at_RABGEF1_5end
chr7	66093908	66093974	CAGE_peak_4_at_KCTD7_5end,CAGE_peak_5_at_RABGEF1_5end
chr7	66094011	66094053	CAGE_peak_3_at_KCTD7_5end,CAGE_peak_4_at_RABGEF1_5end
chr7	66205671	66205698	CAGE_peak_2_at_KCTD7_5end,CAGE_peak_3_at_RABGEF1_5end
chr7	66205712	66205726	CAGE_peak_1_at_KCTD7_5end,CAGE_peak_1_at_RABGEF1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I066325	66325163	66325392	0.29	[{'connected_gene': 'RABGEF1', 'score': 7.79}, {'connected_gene': 'KCTD7', 'score': 7.44}, {'connected_gene': 'TPST1', 'score': 1.26}, {'connected_gene': 'RNU6-313P', 'score': 0.37}, {'connected_gene': 'GC07P066346', 'score': 0.37}, {'connected_gene': 'GC07P066239', 'score': 0.17}]
chr7	GH07I066295	66295544	66297716	1.15	[{'connected_gene': 'RABGEF1', 'score': 7.95}, {'connected_gene': 'KCTD7', 'score': 6.83}, {'connected_gene': 'RNU6-313P', 'score': 0.25}, {'connected_gene': 'GC07P066346', 'score': 0.25}, {'connected_gene': 'GC07P066239', 'score': 0.22}, {'connected_gene': 'TPST1', 'score': 0.16}]
chr7	GH07I066781	66781579	66784872	0.83	[{'connected_gene': 'RABGEF1', 'score': 25.85}, {'connected_gene': 'KCTD7', 'score': 11.23}, {'connected_gene': 'ENSG00000229180', 'score': 10.43}, {'connected_gene': 'GC07M066788', 'score': 0.44}, {'connected_gene': 'ENSG00000271064', 'score': 0.29}]
chr7	GH07I066769	66769001	66769200	0.31	[{'connected_gene': 'RABGEF1', 'score': 11.81}, {'connected_gene': 'KCTD7', 'score': 11.75}, {'connected_gene': 'GC07M066788', 'score': 0.37}, {'connected_gene': 'ENSG00000271064', 'score': 0.34}, {'connected_gene': 'GC07P066740', 'score': 0.31}]
chr7	GH07I066767	66767601	66767800	0.2	[{'connected_gene': 'RABGEF1', 'score': 11.81}, {'connected_gene': 'KCTD7', 'score': 11.76}, {'connected_gene': 'ENSG00000271064', 'score': 0.37}, {'connected_gene': 'GC07M066788', 'score': 0.34}, {'connected_gene': 'GC07P066740', 'score': 0.31}]
chr7	GH07I066739	66739267	66743437	2.33	[{'connected_gene': 'RABGEF1', 'score': 582.03}, {'connected_gene': 'GC07P066740', 'score': 550.77}, {'connected_gene': 'ENSG00000272831', 'score': 550.77}, {'connected_gene': 'LOC100996437', 'score': 60.22}, {'connected_gene': 'KCTD7', 'score': 4.82}, {'connected_gene': 'TMEM248', 'score': 1.31}, {'connected_gene': 'ENSG00000271064', 'score': 0.44}]
chr7	GH07I066687	66687536	66687588	0.6	[{'connected_gene': 'KCTD7', 'score': 3.16}, {'connected_gene': 'RABGEF1', 'score': 2.83}, {'connected_gene': 'GC07M066672', 'score': 0.77}, {'connected_gene': 'GC07P066740', 'score': 0.23}]
chr7	GH07I066625	66625550	66632156	2.46	[{'connected_gene': 'KCTD7', 'score': 562.5}, {'connected_gene': 'LOC100996437', 'score': 57.15}, {'connected_gene': 'RABGEF1', 'score': 32.21}, {'connected_gene': 'VKORC1L1', 'score': 28.36}, {'connected_gene': 'GS1-124K5.4', 'score': 21.05}, {'connected_gene': 'ENSG00000273448', 'score': 16.15}, {'connected_gene': 'SPDYE21P', 'score': 14.32}, {'connected_gene': 'ENSG00000229180', 'score': 12.29}, {'connected_gene': 'ENSG00000244657', 'score': 9.74}, {'connected_gene': 'CCT6P1', 'score': 4.16}, {'connected_gene': 'PIR62631', 'score': 0.39}]
chr7	GH07I066779	66779689	66780658	0.52	[{'connected_gene': 'VKORC1L1', 'score': 29.14}, {'connected_gene': 'RABGEF1', 'score': 25.68}, {'connected_gene': 'GS1-124K5.4', 'score': 14.73}, {'connected_gene': 'KCTD7', 'score': 11.23}, {'connected_gene': 'LOC644794', 'score': 5.21}, {'connected_gene': 'GC07M066788', 'score': 0.44}, {'connected_gene': 'ENSG00000271064', 'score': 0.29}]
chr7	GH07I066250	66250145	66252090	1.33	[{'connected_gene': 'LOC100996437', 'score': 33.9}, {'connected_gene': 'TPST1', 'score': 11.74}, {'connected_gene': 'RABGEF1', 'score': 9.21}, {'connected_gene': 'KCTD7', 'score': 4.58}, {'connected_gene': 'CCT6P1', 'score': 4.08}, {'connected_gene': 'VKORC1L1', 'score': 3.76}, {'connected_gene': 'GC07P066239', 'score': 0.39}, {'connected_gene': 'RNU6-313P', 'score': 0.16}, {'connected_gene': 'GC07P066346', 'score': 0.16}]
chr7	GH07I066413	66413014	66414400	1.39	[{'connected_gene': 'LOC100996437', 'score': 33.7}, {'connected_gene': 'RABGEF1', 'score': 22.48}, {'connected_gene': 'CCT6P1', 'score': 6.72}, {'connected_gene': 'KCTD7', 'score': 4.32}, {'connected_gene': 'GTF2IP9', 'score': 0.77}, {'connected_gene': 'SKP1P1', 'score': 0.39}, {'connected_gene': 'LINC00174', 'score': 0.18}, {'connected_gene': 'TPST1', 'score': 0.08}]
chr7	GH07I066297	66297775	66298073	0.65	[{'connected_gene': 'LOC100996437', 'score': 38.14}, {'connected_gene': 'RABGEF1', 'score': 16.17}, {'connected_gene': 'KCTD7', 'score': 7.28}, {'connected_gene': 'RNU6-313P', 'score': 0.25}, {'connected_gene': 'GC07P066346', 'score': 0.25}, {'connected_gene': 'GC07P066239', 'score': 0.22}, {'connected_gene': 'TPST1', 'score': 0.16}]
chr7	GH07I066653	66653033	66656876	2.06	[{'connected_gene': 'LOC100996437', 'score': 589.6}, {'connected_gene': 'RABGEF1', 'score': 28.7}, {'connected_gene': 'VKORC1L1', 'score': 28.34}, {'connected_gene': 'GS1-124K5.4', 'score': 20.95}, {'connected_gene': 'CRCP', 'score': 17.46}, {'connected_gene': 'KCTD7', 'score': 15.52}, {'connected_gene': 'ENSG00000229180', 'score': 5.94}, {'connected_gene': 'TYW1', 'score': 5.19}, {'connected_gene': 'GC07M066657', 'score': 0.44}]
chr7	GH07I066757	66757802	66760199	1.18	[{'connected_gene': 'LOC100996437', 'score': 59.88}, {'connected_gene': 'RABGEF1', 'score': 34.15}, {'connected_gene': 'GS1-124K5.4', 'score': 20.16}, {'connected_gene': 'CRCP', 'score': 16.92}, {'connected_gene': 'KCTD7', 'score': 7.69}, {'connected_gene': 'ENSG00000271064', 'score': 0.44}, {'connected_gene': 'GC07P066740', 'score': 0.37}, {'connected_gene': 'GC07M066788', 'score': 0.31}]
chr7	GH07I066139	66139546	66143781	0.91	[{'connected_gene': 'LOC100996437', 'score': 32.74}, {'connected_gene': 'VKORC1L1', 'score': 29.44}, {'connected_gene': 'TPST1', 'score': 20.04}, {'connected_gene': 'RABGEF1', 'score': 15.62}, {'connected_gene': 'KCTD7', 'score': 10.65}, {'connected_gene': 'PIR31229', 'score': 0.77}, {'connected_gene': 'GC07P066141', 'score': 0.77}, {'connected_gene': 'ENSG00000234185', 'score': 0.34}, {'connected_gene': 'CRCP', 'score': 0.31}, {'connected_gene': 'ENSG00000249319', 'score': 0.23}]
chr7	GH07I066634	66634310	66637152	1.1	[{'connected_gene': 'LOC100996437', 'score': 54.8}, {'connected_gene': 'VKORC1L1', 'score': 28.34}, {'connected_gene': 'RABGEF1', 'score': 26.98}, {'connected_gene': 'PIR62631', 'score': 0.44}, {'connected_gene': 'KCTD7', 'score': 0.44}]
chr7	GH07I066618	66618373	66620567	0.68	[{'connected_gene': 'LOC100996437', 'score': 53.61}, {'connected_gene': 'GS1-124K5.4', 'score': 20.47}, {'connected_gene': 'RABGEF1', 'score': 15.8}, {'connected_gene': 'TPST1', 'score': 10.08}, {'connected_gene': 'KCTD7', 'score': 0.44}, {'connected_gene': 'RPL35P5', 'score': 0.39}]
chr7	GH07I066281	66281254	66284553	1.48	[{'connected_gene': 'LOC100996437', 'score': 39.79}, {'connected_gene': 'GS1-124K5.4', 'score': 21.74}, {'connected_gene': 'CRCP', 'score': 17.84}, {'connected_gene': 'TPST1', 'score': 11.49}, {'connected_gene': 'RABGEF1', 'score': 10.22}, {'connected_gene': 'KCTD7', 'score': 6.09}, {'connected_gene': 'GC07P066239', 'score': 0.26}, {'connected_gene': 'RNU6-313P', 'score': 0.21}, {'connected_gene': 'GC07P066346', 'score': 0.21}]
chr7	GH07I066589	66589801	66593657	1.26	[{'connected_gene': 'ENSG00000229180', 'score': 554.46}, {'connected_gene': 'GS1-124K5.11', 'score': 550.77}, {'connected_gene': 'LOC100996437', 'score': 57.1}, {'connected_gene': 'VKORC1L1', 'score': 28.98}, {'connected_gene': 'CRCP', 'score': 19.83}, {'connected_gene': 'RABGEF1', 'score': 15.75}, {'connected_gene': 'KCTD7', 'score': 12.68}, {'connected_gene': 'RPL35P5', 'score': 10.61}, {'connected_gene': 'CCT6P1', 'score': 5.36}, {'connected_gene': 'ENSG00000177418', 'score': 0.29}]
chr7	GH07I066640	66640425	66641885	0.87	[{'connected_gene': 'PIR62631', 'score': 550.77}, {'connected_gene': 'RABGEF1', 'score': 26.99}, {'connected_gene': 'LOC100996437', 'score': 4.39}, {'connected_gene': 'KCTD7', 'score': 0.39}]
chr7	GH07I066642	66642235	66642857	0.2	[{'connected_gene': 'PIR62631', 'score': 550.77}, {'connected_gene': 'LOC100996437', 'score': 55.99}, {'connected_gene': 'RABGEF1', 'score': 10.73}, {'connected_gene': 'TPST1', 'score': 9.62}, {'connected_gene': 'GC07P066646', 'score': 0.77}, {'connected_gene': 'KCTD7', 'score': 0.39}]