PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000339022	[[96443250, 96443744], [96447526, 96447689], [96447881, 96448031], [96454673, 96454834], [96480152, 96480294], [96484102, 96484290], [96493053, 96493195], [96495019, 96495945]]	[[96443576, 96443744], [96447526, 96447689], [96447881, 96448031], [96454673, 96454834], [96480152, 96480294], [96484102, 96484290], [96493053, 96493195], [96495019, 96495201]]
ENST00000285979	[[96443377, 96443744], [96447526, 96447689], [96447881, 96448031], [96454673, 96454834], [96466540, 96466717], [96480152, 96480294], [96484102, 96484290], [96493053, 96493195], [96495019, 96495947]]	[[96443576, 96443744], [96447526, 96447689], [96447881, 96448031], [96454673, 96454834], [96466540, 96466717], [96480152, 96480294], [96484102, 96484290], [96493053, 96493195], [96495019, 96495201]]
NM_001128925	[[96443250, 96443744], [96447526, 96447689], [96447881, 96448031], [96454673, 96454834], [96480152, 96480294], [96484102, 96484290], [96493053, 96493195], [96495019, 96495947]]	[[96443576, 96443744], [96447526, 96447689], [96447881, 96448031], [96454673, 96454834], [96480152, 96480294], [96484102, 96484290], [96493053, 96493195], [96495019, 96495201]]
NM_000772	[[96443250, 96443744], [96447526, 96447689], [96447881, 96448031], [96454673, 96454834], [96466540, 96466717], [96480152, 96480294], [96484102, 96484290], [96493053, 96493195], [96495019, 96495947]]	[[96443576, 96443744], [96447526, 96447689], [96447881, 96448031], [96454673, 96454834], [96466540, 96466717], [96480152, 96480294], [96484102, 96484290], [96493053, 96493195], [96495019, 96495201]]

Promoter

Chrom	Start	End	Description
chr10	96443204	96443217	CAGE_peak_3_at_CYP2C18_5end
chr10	96443420	96443430	CAGE_peak_6_at_CYP2C18_5end
chr10	96443469	96443474	CAGE_peak_8_at_CYP2C18_5end
chr10	96443479	96443495	CAGE_peak_2_at_CYP2C18_5end
chr10	96443514	96443527	CAGE_peak_4_at_CYP2C18_5end
chr10	96443528	96443541	CAGE_peak_5_at_CYP2C18_5end
chr10	96443542	96443563	CAGE_peak_1_at_CYP2C18_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I095271	95271476	95282774	1.39	[{'connected_gene': 'PDLIM1', 'score': 8.83}, {'connected_gene': 'CYP2C8', 'score': 6.54}, {'connected_gene': 'TBC1D12', 'score': 5.33}, {'connected_gene': 'ACSM6', 'score': 5.3}, {'connected_gene': 'CYP2C18', 'score': 4.61}, {'connected_gene': 'TCTN3', 'score': 4.0}, {'connected_gene': 'GC10M095264', 'score': 0.44}, {'connected_gene': 'GC10M095235', 'score': 0.26}]
chr10	GH10I094679	94679461	94684898	1.36	[{'connected_gene': 'CYP2C18', 'score': 550.77}, {'connected_gene': 'ACSM6', 'score': 27.79}, {'connected_gene': 'CYP2C19', 'score': 14.98}, {'connected_gene': 'MTND4P19', 'score': 5.84}, {'connected_gene': 'NOC3L', 'score': 5.34}, {'connected_gene': 'CYP2C9', 'score': 4.69}, {'connected_gene': 'CTBP2P2', 'score': 0.29}]
chr10	GH10I094676	94676448	94678172	0.65	[{'connected_gene': 'ACSM6', 'score': 27.83}, {'connected_gene': 'CYP2C18', 'score': 0.44}, {'connected_gene': 'CTBP2P2', 'score': 0.31}]