PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000379992	[[27948075, 27950704], [28012352, 28012403], [28295205, 28295364], [28372833, 28372866], [28475937, 28476023], [28670197, 28670283]]	[[27948848, 27950669]]
ENST00000493941	[[28080602, 28080976], [28295205, 28295329]]	None
ENST00000308675	[[27948559, 27950704], [28012352, 28012403], [28025729, 28025839], [28026256, 28026318]]	[[27948848, 27950669]]
NM_152570	[[27948083, 27950704], [28012352, 28012403], [28295205, 28295364], [28372833, 28372866], [28475937, 28476023], [28670197, 28670278], [28719098, 28719303]]	[[27948848, 27950669]]
NM_001258282	[[27948083, 27950704], [28295205, 28295364], [28372833, 28372866], [28475937, 28476023], [28670197, 28670278], [28947815, 28947912], [29212919, 29212998]]	[[27948848, 27950669]]

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I028271	28271340	28272861	0.2	[{'connected_gene': 'LOC646700', 'score': 0.13}, {'connected_gene': 'LOC105376004', 'score': 0.06}, {'connected_gene': 'LINGO2', 'score': 0.02}]
chr9	GH09I028234	28234983	28235132	0.38	[{'connected_gene': 'LOC646700', 'score': 0.17}, {'connected_gene': 'LOC105376004', 'score': 0.06}, {'connected_gene': 'LINGO2', 'score': 0.02}]
chr9	GH09I028259	28259860	28260258	0.23	[{'connected_gene': 'LINGO2', 'score': 1.33}, {'connected_gene': 'LOC646700', 'score': 0.14}, {'connected_gene': 'LOC105376004', 'score': 0.06}]
chr9	GH09I028365	28365595	28365786	0.35	[{'connected_gene': 'LINGO2', 'score': 6.03}, {'connected_gene': 'LOC105376004', 'score': 0.09}, {'connected_gene': 'LOC646700', 'score': 0.08}]
chr9	GH09I028649	28649801	28650022	0.26	[{'connected_gene': 'LINGO2', 'score': 5.21}, {'connected_gene': 'GC09P028634', 'score': 0.37}, {'connected_gene': 'LOC105376003', 'score': 0.31}, {'connected_gene': 'MIR876', 'score': 0.08}]
chr9	GH09I028915	28915313	28915964	0.63	[{'connected_gene': 'LINGO2', 'score': 17.24}, {'connected_gene': 'MIR873', 'score': 0.31}, {'connected_gene': 'GC09P029173', 'score': 0.07}]
chr9	GH09I028969	28969218	28972148	0.69	[{'connected_gene': 'LINGO2', 'score': 9.36}, {'connected_gene': 'MIR873', 'score': 0.18}, {'connected_gene': 'GC09P029173', 'score': 0.08}]
chr9	GH09I028956	28956403	28957256	0.4	[{'connected_gene': 'LINGO2', 'score': 14.79}, {'connected_gene': 'MIR873', 'score': 0.2}, {'connected_gene': 'GC09P029173', 'score': 0.08}]
chr9	GH09I028916	28916463	28916612	0.2	[{'connected_gene': 'LINGO2', 'score': 6.74}, {'connected_gene': 'MIR873', 'score': 0.31}, {'connected_gene': 'GC09P029173', 'score': 0.07}]
chr9	GH09I028670	28670270	28670329	0.5	[{'connected_gene': 'LINGO2', 'score': 550.03}, {'connected_gene': 'GC09P028634', 'score': 0.28}, {'connected_gene': 'MIR876', 'score': 0.08}]
chr9	GH09I028539	28539494	28539762	0.53	[{'connected_gene': 'LOC105376004', 'score': 550.77}, {'connected_gene': 'LINGO2', 'score': 2.9}, {'connected_gene': 'LOC646700', 'score': 0.05}]
chr9	GH09I028922	28922943	28923092	0.2	[{'connected_gene': 'MIR873', 'score': 0.29}, {'connected_gene': 'GC09P029173', 'score': 0.07}, {'connected_gene': 'LINGO2', 'score': 0.06}]
chr9	GH09I028923	28923443	28923592	0.31	[{'connected_gene': 'MIR873', 'score': 0.29}, {'connected_gene': 'GC09P029173', 'score': 0.07}, {'connected_gene': 'LINGO2', 'score': 0.06}]
chr9	GH09I028924	28924903	28925052	0.2	[{'connected_gene': 'MIR873', 'score': 0.28}, {'connected_gene': 'GC09P029173', 'score': 0.07}, {'connected_gene': 'LINGO2', 'score': 0.06}]
chr9	GH09I028928	28928680	28928798	0.2	[{'connected_gene': 'MIR873', 'score': 0.28}, {'connected_gene': 'GC09P029173', 'score': 0.07}, {'connected_gene': 'LINGO2', 'score': 0.06}]
chr9	GH09I028927	28927823	28927972	0.62	[{'connected_gene': 'MIR873', 'score': 0.28}, {'connected_gene': 'GC09P029173', 'score': 0.07}, {'connected_gene': 'LINGO2', 'score': 0.06}]
chr9	GH09I028768	28768005	28768361	0.22	[{'connected_gene': 'MIR876', 'score': 0.15}, {'connected_gene': 'GC09P028634', 'score': 0.12}, {'connected_gene': 'LINGO2', 'score': 0.05}]
chr9	GH09I028778	28778883	28780035	0.56	[{'connected_gene': 'MIR876', 'score': 0.18}, {'connected_gene': 'GC09P028634', 'score': 0.11}, {'connected_gene': 'LINGO2', 'score': 0.04}]
chr9	GH09I028810	28810620	28811022	0.46	[{'connected_gene': 'MIR876', 'score': 0.23}, {'connected_gene': 'GC09P028634', 'score': 0.1}, {'connected_gene': 'LINGO2', 'score': 0.05}]
chr9	GH09I028820	28820272	28822219	0.31	[{'connected_gene': 'MIR876', 'score': 0.26}, {'connected_gene': 'GC09P028634', 'score': 0.09}, {'connected_gene': 'LINGO2', 'score': 0.05}]
chr9	GH09I028925	28925323	28925629	0.6	[{'connected_gene': 'ENSG00000260412', 'score': 8.63}, {'connected_gene': 'LINGO2', 'score': 6.75}, {'connected_gene': 'MIR873', 'score': 0.28}, {'connected_gene': 'GC09P029173', 'score': 0.07}]
chr9	GH09I029078	29078443	29078592	0.56	[{'connected_gene': 'GC09P029173', 'score': 0.15}, {'connected_gene': 'LINGO2', 'score': 0.12}, {'connected_gene': 'MIR873', 'score': 0.09}]
chr9	GH09I029211	29211201	29214530	0.92	[{'connected_gene': 'GC09P029215', 'score': 550.77}, {'connected_gene': 'LINGO2', 'score': 550.77}, {'connected_gene': 'GC09M029212', 'score': 0.77}, {'connected_gene': 'PIR41773', 'score': 0.34}]
chr9	GH09I029214	29214963	29215200	0.58	[{'connected_gene': 'GC09P029215', 'score': 550.77}, {'connected_gene': 'GC09M029212', 'score': 550.77}, {'connected_gene': 'LINGO2', 'score': 550.77}]
chr9	GH09I028650	28650503	28650652	0.2	[{'connected_gene': 'GC09P028634', 'score': 0.37}, {'connected_gene': 'LOC105376003', 'score': 0.29}, {'connected_gene': 'MIR876', 'score': 0.08}, {'connected_gene': 'LINGO2', 'score': 0.03}]
chr9	GH09I028651	28650143	28650440	0.2	[{'connected_gene': 'GC09P028634', 'score': 0.37}, {'connected_gene': 'LOC105376003', 'score': 0.29}, {'connected_gene': 'MIR876', 'score': 0.08}, {'connected_gene': 'LINGO2', 'score': 0.03}]
chr9	GH09I028688	28688363	28688392	0.31	[{'connected_gene': 'GC09P028634', 'score': 0.23}, {'connected_gene': 'MIR876', 'score': 0.1}, {'connected_gene': 'LINGO2', 'score': 0.03}]