PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000358151	[[114287438, 114287542], [114289547, 114290087], [114293154, 114293243], [114296018, 114296145], [114296540, 114296633], [114338644, 114340124]]	[[114289675, 114290087], [114293154, 114293243], [114296018, 114296145], [114296540, 114296633], [114338644, 114338694]]
ENST00000355824	[[114287468, 114287542], [114289547, 114290087], [114293154, 114293243], [114296018, 114296145], [114296540, 114296633], [114301725, 114302041]]	[[114289675, 114290087], [114293154, 114293243], [114296018, 114296145], [114296540, 114296633], [114301725, 114301739]]
ENST00000309235	[[114287512, 114287542], [114289547, 114290087], [114293154, 114293243], [114296018, 114296145], [114296540, 114296633], [114303936, 114306712]]	[[114289675, 114290087], [114293154, 114293243], [114296018, 114296145], [114296540, 114296633], [114303936, 114305450]]
ENST00000374374	[[114287495, 114287542], [114289547, 114290300]]	[[114289675, 114290212]]
NM_133464	[[114287438, 114287542], [114289547, 114290087], [114293154, 114293243], [114296018, 114296145], [114296540, 114296633], [114303936, 114306712]]	[[114289675, 114290087], [114293154, 114293243], [114296018, 114296145], [114296540, 114296633], [114303936, 114305450]]
NM_001007169	[[114287438, 114287542], [114289547, 114290087], [114293154, 114293243], [114296018, 114296145], [114296540, 114296633], [114338644, 114340124]]	[[114289675, 114290087], [114293154, 114293243], [114296018, 114296145], [114296540, 114296633], [114338644, 114338694]]

Promoter

Chrom	Start	End	Description
chr9	114287429	114287432	CAGE_peak_2_at_ZNF483_5end
chr9	114287433	114287513	CAGE_peak_1_at_ZNF483_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I112336	112336227	112339298	0.97	[{'connected_gene': 'ZFP37', 'score': 20.11}, {'connected_gene': 'SUSD1', 'score': 18.28}, {'connected_gene': 'ZNF483', 'score': 15.96}, {'connected_gene': 'HSDL2', 'score': 7.7}, {'connected_gene': 'PTBP3', 'score': 0.77}, {'connected_gene': 'GC09M112353', 'score': 0.37}]
chr9	GH09I111235	111235503	111237199	0.2	[{'connected_gene': 'OR2K2', 'score': 9.6}, {'connected_gene': 'LPAR1', 'score': 6.06}, {'connected_gene': 'ZNF483', 'score': 4.91}, {'connected_gene': 'MIR7702', 'score': 0.29}, {'connected_gene': 'ENSG00000227531', 'score': 0.25}, {'connected_gene': 'LOC105376219', 'score': 0.25}, {'connected_gene': 'RNY4P18', 'score': 0.12}, {'connected_gene': 'GC09M111098', 'score': 0.12}]
chr9	GH09I111597	111597767	111600402	1.88	[{'connected_gene': 'PTGR1', 'score': 566.3}, {'connected_gene': 'GNG10', 'score': 16.06}, {'connected_gene': 'LRRC37A5P', 'score': 6.67}, {'connected_gene': 'ZNF483', 'score': 5.82}, {'connected_gene': 'ENSG00000224644', 'score': 0.34}]
chr9	GH09I111600	111600888	111602001	1.25	[{'connected_gene': 'PTGR1', 'score': 560.65}, {'connected_gene': 'GNG10', 'score': 13.09}, {'connected_gene': 'ZNF483', 'score': 5.81}, {'connected_gene': 'ECPAS', 'score': 2.1}, {'connected_gene': 'PIR33411', 'score': 0.44}]
chr9	GH09I111232	111232961	111234594	0.43	[{'connected_gene': 'PTGR1', 'score': 7.28}, {'connected_gene': 'LPAR1', 'score': 6.62}, {'connected_gene': 'ZNF483', 'score': 4.72}, {'connected_gene': 'GNG10', 'score': 4.61}, {'connected_gene': 'MIR7702', 'score': 0.28}, {'connected_gene': 'LOC105376219', 'score': 0.23}, {'connected_gene': 'ENSG00000227531', 'score': 0.23}, {'connected_gene': 'RNY4P18', 'score': 0.12}, {'connected_gene': 'GC09M111098', 'score': 0.12}]
chr9	GH09I111470	111470386	111471757	0.2	[{'connected_gene': 'PTGR1', 'score': 8.45}, {'connected_gene': 'ZNF483', 'score': 8.12}, {'connected_gene': 'ECPAS', 'score': 0.39}, {'connected_gene': 'RNA5SP294', 'score': 0.22}]
chr9	GH09I111065	111065746	111069467	1.05	[{'connected_gene': 'LPAR1', 'score': 11.82}, {'connected_gene': 'ZNF483', 'score': 5.1}, {'connected_gene': 'RNY4P18', 'score': 0.31}, {'connected_gene': 'GC09M111098', 'score': 0.31}]
chr9	GH09I110536	110536901	110537070	0.78	[{'connected_gene': 'ZNF483', 'score': 13.58}, {'connected_gene': 'GC09M110541', 'score': 0.77}, {'connected_gene': 'SVEP1', 'score': 0.26}, {'connected_gene': 'RNU6-1039P', 'score': 0.1}, {'connected_gene': 'GC09M110370', 'score': 0.1}]
chr9	GH09I111407	111407629	111408272	0.31	[{'connected_gene': 'ZNF483', 'score': 6.12}, {'connected_gene': 'SVEP1', 'score': 4.93}, {'connected_gene': 'RNA5SP294', 'score': 0.77}, {'connected_gene': 'PIR34688', 'score': 0.19}, {'connected_gene': 'ECPAS', 'score': 0.18}]
chr9	GH09I111356	111356152	111357279	0.74	[{'connected_gene': 'ZNF483', 'score': 7.87}, {'connected_gene': 'PTGR1', 'score': 5.86}, {'connected_gene': 'PIR34688', 'score': 0.37}, {'connected_gene': 'RNA5SP294', 'score': 0.22}]
chr9	GH09I112007	112007662	112008565	0.57	[{'connected_gene': 'ZNF483', 'score': 13.0}, {'connected_gene': 'RNU6-710P', 'score': 0.39}, {'connected_gene': 'LOC105376220', 'score': 0.34}]
chr9	GH09I111526	111526200	111526400	0.61	[{'connected_gene': 'ZNF483', 'score': 0.77}, {'connected_gene': 'ENSG00000224644', 'score': 0.25}]
chr9	GH09I111524	111524581	111526144	1.86	[{'connected_gene': 'ZNF483', 'score': 556.29}, {'connected_gene': 'ENSG00000224644', 'score': 0.25}]
chr9	GH09I111457	111457841	111459130	0.49	[{'connected_gene': 'ECPAS', 'score': 12.58}, {'connected_gene': 'GNG10', 'score': 10.14}, {'connected_gene': 'ENSG00000224644', 'score': 9.88}, {'connected_gene': 'ZNF483', 'score': 6.68}, {'connected_gene': 'RNA5SP294', 'score': 0.25}]
chr9	GH09I111481	111481421	111485286	2.26	[{'connected_gene': 'ECPAS', 'score': 550.77}, {'connected_gene': 'PTGR1', 'score': 11.77}, {'connected_gene': 'ZNF483', 'score': 8.69}, {'connected_gene': 'RNA5SP294', 'score': 0.19}]
chr9	GH09I111572	111572826	111573985	0.66	[{'connected_gene': 'ENSG00000224644', 'score': 550.77}, {'connected_gene': 'PTGR1', 'score': 17.35}, {'connected_gene': 'ZNF483', 'score': 8.3}]
chr9	GH09I111527	111527373	111530710	0.54	[{'connected_gene': 'ENSG00000224644', 'score': 11.04}, {'connected_gene': 'ECPAS', 'score': 10.71}, {'connected_gene': 'ZNF483', 'score': 8.55}, {'connected_gene': 'PTGR1', 'score': 5.34}]