PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371531	[[94833231, 94833591], [94834064, 94834289], [94834535, 94834826], [94834905, 94835064], [94835582, 94835717], [94836300, 94836453], [94836719, 94837641]]	[[94834082, 94834289], [94834535, 94834826], [94834905, 94835064], [94835582, 94835717], [94836300, 94836453], [94836719, 94837061]]
ENST00000224356	[[94833646, 94833880], [94834064, 94834289], [94834535, 94834826], [94834905, 94835064], [94835582, 94835717], [94836300, 94836453], [94836719, 94837647]]	[[94833691, 94833880], [94834064, 94834289], [94834535, 94834826], [94834905, 94835064], [94835582, 94835717], [94836300, 94836453], [94836719, 94837061]]
ENST00000394139	[[94833646, 94833880], [94834064, 94834289], [94834535, 94834826], [94834905, 94835064], [94835582, 94835717], [94836300, 94836453], [94836719, 94837647]]	[[94834082, 94834289], [94834535, 94834826], [94834905, 94835064], [94835582, 94835717], [94836300, 94836453], [94836719, 94837061]]
NM_057157	[[94833231, 94833591], [94834064, 94834289], [94834535, 94834826], [94834905, 94835064], [94835582, 94835717], [94836300, 94836453], [94836719, 94837641]]	[[94834082, 94834289], [94834535, 94834826], [94834905, 94835064], [94835582, 94835717], [94836300, 94836453], [94836719, 94837061]]
NM_000783	[[94833646, 94833880], [94834064, 94834289], [94834535, 94834826], [94834905, 94835064], [94835582, 94835717], [94836300, 94836453], [94836719, 94837641]]	[[94833691, 94833880], [94834064, 94834289], [94834535, 94834826], [94834905, 94835064], [94835582, 94835717], [94836300, 94836453], [94836719, 94837061]]

Promoter

Chrom	Start	End	Description
chr10	94833642	94833655	CAGE_peak_1_at_CYP26A1_5end
chr10	94833710	94833721	CAGE_peak_2_at_CYP26A1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I093514	93514602	93516800	0.6	[{'connected_gene': 'CEP55', 'score': 19.2}, {'connected_gene': 'FFAR4', 'score': 10.88}, {'connected_gene': 'CYP26A1', 'score': 10.43}, {'connected_gene': 'RNA5SP323', 'score': 0.44}, {'connected_gene': 'GC10M093511', 'score': 0.44}, {'connected_gene': 'GC10M093549', 'score': 0.28}]
chr10	GH10I093378	93378829	93381774	0.97	[{'connected_gene': 'MYOF', 'score': 13.22}, {'connected_gene': 'CYP26A1', 'score': 10.4}, {'connected_gene': 'GC10P093383', 'score': 0.77}, {'connected_gene': 'RPL17P34', 'score': 0.15}]
chr10	GH10I093375	93375530	93378468	1.48	[{'connected_gene': 'MYOF', 'score': 15.27}, {'connected_gene': 'CYP26A1', 'score': 10.4}, {'connected_gene': 'HHEX', 'score': 4.69}, {'connected_gene': 'GC10P093383', 'score': 0.44}, {'connected_gene': 'RPL17P34', 'score': 0.16}]
chr10	GH10I093395	93395552	93399473	0.2	[{'connected_gene': 'MYOF', 'score': 17.41}, {'connected_gene': 'CYP26A1', 'score': 10.85}, {'connected_gene': 'GC10P093383', 'score': 0.39}, {'connected_gene': 'GC10M093427', 'score': 0.31}]
chr10	GH10I093267	93267164	93268685	0.75	[{'connected_gene': 'CYP26A1', 'score': 10.75}, {'connected_gene': 'RPL17P34', 'score': 0.37}, {'connected_gene': 'XRCC6P1', 'score': 0.22}]
chr10	GH10I093299	93299129	93300534	0.38	[{'connected_gene': 'CYP26A1', 'score': 11.07}, {'connected_gene': 'RPL17P34', 'score': 0.37}, {'connected_gene': 'GC10P093383', 'score': 0.18}]
chr10	GH10I093294	93294124	93294273	0.2	[{'connected_gene': 'CYP26A1', 'score': 11.66}, {'connected_gene': 'RPL17P34', 'score': 0.44}, {'connected_gene': 'GC10P093383', 'score': 0.17}]
chr10	GH10I092885	92885064	92885133	0.54	[{'connected_gene': 'CYP26A1', 'score': 11.01}, {'connected_gene': 'ENSG00000225118', 'score': 0.44}, {'connected_gene': 'EXOC6', 'score': 0.23}, {'connected_gene': 'ENSG00000226425', 'score': 0.1}]
chr10	GH10I093071	93071522	93075509	1.91	[{'connected_gene': 'CYP26A1', 'score': 557.2}, {'connected_gene': 'ENSG00000279607', 'score': 550.77}, {'connected_gene': 'PDE6C', 'score': 13.89}, {'connected_gene': 'EXOC6', 'score': 5.74}, {'connected_gene': 'GC10M093106', 'score': 0.29}, {'connected_gene': 'NIP7P1', 'score': 0.29}]
chr10	GH10I093352	93352495	93353286	0.64	[{'connected_gene': 'CYP26A1', 'score': 12.35}, {'connected_gene': 'CYP26C1', 'score': 10.98}, {'connected_gene': 'ENSG00000226425', 'score': 10.98}, {'connected_gene': 'GC10P093383', 'score': 0.29}, {'connected_gene': 'RPL17P34', 'score': 0.2}, {'connected_gene': 'MYOF', 'score': 0.13}]
chr10	GH10I093401	93401046	93402755	0.43	[{'connected_gene': 'CYP26A1', 'score': 10.85}, {'connected_gene': 'GC10P093383', 'score': 0.37}, {'connected_gene': 'GC10M093427', 'score': 0.31}, {'connected_gene': 'MYOF', 'score': 0.18}]
chr10	GH10I093403	93403201	93403993	0.74	[{'connected_gene': 'CYP26A1', 'score': 10.85}, {'connected_gene': 'GC10P093383', 'score': 0.34}, {'connected_gene': 'GC10M093427', 'score': 0.34}, {'connected_gene': 'MYOF', 'score': 0.18}]
chr10	GH10I093080	93080201	93080734	0.82	[{'connected_gene': 'MARK2P9', 'score': 4.85}, {'connected_gene': 'CYP26A1', 'score': 0.44}, {'connected_gene': 'GC10M093106', 'score': 0.31}, {'connected_gene': 'NIP7P1', 'score': 0.31}]
chr10	GH10I093106	93106744	93106893	0.88	[{'connected_gene': 'GC10M093106', 'score': 550.77}, {'connected_gene': 'NIP7P1', 'score': 550.77}, {'connected_gene': 'CYP26A1', 'score': 11.83}]
chr10	GH10I093097	93097504	93097653	0.46	[{'connected_gene': 'GC10M093106', 'score': 0.44}, {'connected_gene': 'NIP7P1', 'score': 0.44}, {'connected_gene': 'CYP26A1', 'score': 0.34}]
chr10	GH10I093029	93029879	93031368	0.77	[{'connected_gene': 'ENSG00000226425', 'score': 12.06}, {'connected_gene': 'CYP26C1', 'score': 12.04}, {'connected_gene': 'CYP26A1', 'score': 11.43}, {'connected_gene': 'ENSG00000225118', 'score': 0.1}, {'connected_gene': 'EXOC6', 'score': 0.08}]