PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369704	[[106113521, 106113664], [106118098, 106118380], [106121780, 106121929], [106124490, 106124647], [106125571, 106125766], [106128180, 106128318], [106130652, 106130812], [106136568, 106136651], [106139786, 106139978], [106151990, 106152152], [106153086, 106153233], [106159117, 106159258], [106160437, 106160661], [106163486, 106163598], [106166446, 106166551], [106207455, 106207575], [106209828, 106209962], [106214179, 106214848]]	[[106113655, 106113664], [106118098, 106118380], [106121780, 106121929], [106124490, 106124647], [106125571, 106125766], [106128180, 106128318], [106130652, 106130812], [106136568, 106136651], [106139786, 106139978], [106151990, 106152152], [106153086, 106153233], [106159117, 106159258], [106160437, 106160661], [106163486, 106163598], [106166446, 106166551], [106207455, 106207575], [106209828, 106209962], [106214179, 106214288]]
ENST00000312902	[[106113533, 106113664], [106118098, 106118380], [106121780, 106121929], [106124490, 106124647], [106125571, 106125766], [106128180, 106128318], [106130652, 106130812], [106136568, 106136651], [106139786, 106139978], [106141883, 106141931]]	[[106136612, 106136651], [106139786, 106139978], [106141883, 106141931]]
ENST00000369703	[[106136612, 106136651], [106139786, 106139978], [106141883, 106142118]]	[[106136612, 106136651], [106139786, 106139978], [106141883, 106141931]]
NM_001008723	[[106113521, 106113664], [106118098, 106118380], [106121780, 106121929], [106124490, 106124647], [106125571, 106125766], [106128180, 106128318], [106130652, 106130812], [106136568, 106136651], [106139786, 106139978], [106151990, 106152152], [106153086, 106153233], [106159117, 106159258], [106160437, 106160661], [106163486, 106163598], [106166446, 106166551], [106207455, 106207575], [106209828, 106209962], [106214179, 106214848]]	[[106113655, 106113664], [106118098, 106118380], [106121780, 106121929], [106124490, 106124647], [106125571, 106125766], [106128180, 106128318], [106130652, 106130812], [106136568, 106136651], [106139786, 106139978], [106151990, 106152152], [106153086, 106153233], [106159117, 106159258], [106160437, 106160661], [106163486, 106163598], [106166446, 106166551], [106207455, 106207575], [106209828, 106209962], [106214179, 106214288]]

Promoter

Chrom	Start	End	Description
chr10	106113515	106113527	CAGE_peak_2_at_CCDC147_5end
chr10	106113583	106113597	CAGE_peak_1_at_CCDC147_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I104249	104249941	104257493	2.29	[{'connected_gene': 'GSTO1', 'score': 566.67}, {'connected_gene': 'GSTO2', 'score': 29.19}, {'connected_gene': 'ENSG00000260461', 'score': 19.75}, {'connected_gene': 'PDCD11', 'score': 11.74}, {'connected_gene': 'CFAP58', 'score': 10.78}, {'connected_gene': 'CFAP58-AS1', 'score': 10.76}, {'connected_gene': 'GC10M104249', 'score': 0.77}, {'connected_gene': 'MIR4482', 'score': 0.39}]
chr10	GH10I104342	104342163	104344557	0.89	[{'connected_gene': 'ITPRIP', 'score': 25.46}, {'connected_gene': 'CFAP58', 'score': 0.77}, {'connected_gene': 'CFAP58-AS1', 'score': 0.39}]
chr10	GH10I104345	104345543	104346352	1.09	[{'connected_gene': 'ITPRIP', 'score': 23.75}, {'connected_gene': 'SFR1', 'score': 5.82}, {'connected_gene': 'GSTO1', 'score': 3.94}, {'connected_gene': 'CFAP58', 'score': 3.66}, {'connected_gene': 'CFAP58-AS1', 'score': 0.44}]
chr10	GH10I104316	104316368	104341174	2.81	[{'connected_gene': 'ITPRIP', 'score': 578.89}, {'connected_gene': 'GSTO2', 'score': 20.11}, {'connected_gene': 'PDCD11', 'score': 19.85}, {'connected_gene': 'CFAP58', 'score': 18.41}, {'connected_gene': 'SFR1', 'score': 15.41}, {'connected_gene': 'CFAP58-AS1', 'score': 12.26}, {'connected_gene': 'PCGF6', 'score': 10.39}, {'connected_gene': 'TAF5', 'score': 10.36}, {'connected_gene': 'ENSG00000260461', 'score': 10.23}, {'connected_gene': 'GSTO1', 'score': 9.75}, {'connected_gene': 'SLK', 'score': 3.03}, {'connected_gene': 'LOC101927472', 'score': 0.44}]
chr10	GH10I104347	104347048	104348179	0.92	[{'connected_gene': 'ITPRIP', 'score': 24.3}, {'connected_gene': 'CFAP58-AS1', 'score': 0.44}, {'connected_gene': 'CFAP58', 'score': 0.44}]
chr10	GH10I104348	104348741	104354232	2.53	[{'connected_gene': 'CFAP58', 'score': 575.17}, {'connected_gene': 'ITPRIP', 'score': 27.03}, {'connected_gene': 'PDCD11', 'score': 11.74}, {'connected_gene': 'ENSG00000260461', 'score': 10.23}, {'connected_gene': 'SFR1', 'score': 4.21}, {'connected_gene': 'GSTO1', 'score': 2.05}, {'connected_gene': 'SLK', 'score': 1.73}, {'connected_gene': 'CFAP58-AS1', 'score': 0.77}]
chr10	GH10I104066	104066948	104068000	0.76	[{'connected_gene': 'CFAP58', 'score': 4.96}, {'connected_gene': 'GC10M104086', 'score': 0.37}, {'connected_gene': 'GC10M104085', 'score': 0.37}, {'connected_gene': 'COL17A1', 'score': 0.37}, {'connected_gene': 'MIR936', 'score': 0.37}]
chr10	GH10I104080	104080340	104087035	1.5	[{'connected_gene': 'COL17A1', 'score': 550.77}, {'connected_gene': 'CFAP43', 'score': 6.34}, {'connected_gene': 'CFAP58', 'score': 5.05}, {'connected_gene': 'GC10M104086', 'score': 0.77}, {'connected_gene': 'GC10M104085', 'score': 0.77}, {'connected_gene': 'MIR936', 'score': 0.28}]
chr10	GH10I104089	104089674	104089971	0.48	[{'connected_gene': 'SFR1', 'score': 59.98}, {'connected_gene': 'GSTO1', 'score': 5.77}, {'connected_gene': 'CFAP58', 'score': 5.6}, {'connected_gene': 'SLK', 'score': 1.78}, {'connected_gene': 'COL17A1', 'score': 0.77}]
chr10	GH10I104109	104109362	104110946	1.45	[{'connected_gene': 'SFR1', 'score': 42.77}, {'connected_gene': 'COL17A1', 'score': 11.61}, {'connected_gene': 'MIR936', 'score': 11.17}, {'connected_gene': 'STN1', 'score': 10.59}, {'connected_gene': 'CFAP43', 'score': 8.04}, {'connected_gene': 'GSTO1', 'score': 6.52}, {'connected_gene': 'CFAP58', 'score': 5.41}, {'connected_gene': 'SLK', 'score': 1.47}]
chr10	GH10I104258	104258914	104261909	1.46	[{'connected_gene': 'GSTO2', 'score': 35.57}, {'connected_gene': 'GSTO1', 'score': 23.89}, {'connected_gene': 'MIR609', 'score': 10.65}, {'connected_gene': 'SFR1', 'score': 7.72}, {'connected_gene': 'SLK', 'score': 3.56}, {'connected_gene': 'CFAP58', 'score': 3.53}, {'connected_gene': 'ITPRIP', 'score': 1.24}, {'connected_gene': 'GC10M104249', 'score': 0.44}, {'connected_gene': 'MIR4482', 'score': 0.44}]
chr10	GH10I104274	104274315	104276005	1.83	[{'connected_gene': 'GSTO2', 'score': 590.11}, {'connected_gene': 'GSTO1', 'score': 16.51}, {'connected_gene': 'ENSG00000260461', 'score': 13.28}, {'connected_gene': 'PDCD11', 'score': 12.97}, {'connected_gene': 'CFAP58', 'score': 12.17}, {'connected_gene': 'CFAP58-AS1', 'score': 12.14}, {'connected_gene': 'GC10P104302', 'score': 0.31}]
chr10	GH10I104303	104303239	104309332	1.27	[{'connected_gene': 'GSTO2', 'score': 19.91}, {'connected_gene': 'CFAP58', 'score': 12.6}, {'connected_gene': 'CFAP58-AS1', 'score': 12.55}, {'connected_gene': 'ITPRIP', 'score': 12.46}, {'connected_gene': 'GSTO1', 'score': 6.21}, {'connected_gene': 'GC10P104302', 'score': 0.77}, {'connected_gene': 'ENSG00000270075', 'score': 0.44}]
chr10	GH10I104296	104296758	104302741	1.14	[{'connected_gene': 'GSTO2', 'score': 17.71}, {'connected_gene': 'CFAP58', 'score': 12.27}, {'connected_gene': 'CFAP58-AS1', 'score': 12.23}, {'connected_gene': 'ITPRIP', 'score': 11.85}, {'connected_gene': 'GSTO1', 'score': 7.29}, {'connected_gene': 'GC10P104302', 'score': 0.77}]
chr10	GH10I104279	104279186	104279564	0.38	[{'connected_gene': 'GSTO2', 'score': 40.56}, {'connected_gene': 'CFAP58', 'score': 12.18}, {'connected_gene': 'CFAP58-AS1', 'score': 12.15}, {'connected_gene': 'ITPRIP', 'score': 11.28}, {'connected_gene': 'GSTO1', 'score': 6.57}, {'connected_gene': 'GC10P104302', 'score': 0.34}]
chr10	GH10I104229	104229802	104229999	0.2	[{'connected_gene': 'GSTO2', 'score': 14.3}, {'connected_gene': 'CFAP58', 'score': 9.72}, {'connected_gene': 'CFAP58-AS1', 'score': 9.71}, {'connected_gene': 'CFAP43', 'score': 0.77}, {'connected_gene': 'MIR609', 'score': 0.39}]
chr10	GH10I104267	104267129	104269928	2.13	[{'connected_gene': 'GSTO2', 'score': 584.81}, {'connected_gene': 'MIR4482', 'score': 550.77}, {'connected_gene': 'PDCD11', 'score': 30.74}, {'connected_gene': 'TAF5', 'score': 16.83}, {'connected_gene': 'GSTO1', 'score': 16.6}, {'connected_gene': 'PCGF6', 'score': 14.25}, {'connected_gene': 'CFAP58', 'score': 10.76}, {'connected_gene': 'CFAP58-AS1', 'score': 10.74}, {'connected_gene': 'GC10P104302', 'score': 0.29}]
chr10	GH10I104449	104449401	104449893	0.53	[{'connected_gene': 'LOC101927523', 'score': 0.29}, {'connected_gene': 'GC10P104364', 'score': 0.18}, {'connected_gene': 'CFAP58', 'score': 0.14}]
chr10	GH10I104424	104424627	104425432	0.54	[{'connected_gene': 'LOC101927523', 'score': 0.22}, {'connected_gene': 'GC10P104364', 'score': 0.21}, {'connected_gene': 'CFAP58', 'score': 0.17}]
chr10	GH10I104441	104441203	104442285	0.54	[{'connected_gene': 'LOC101927523', 'score': 0.28}, {'connected_gene': 'GC10P104364', 'score': 0.18}, {'connected_gene': 'CFAP58', 'score': 0.15}]
chr10	GH10I104444	104444967	104446297	0.59	[{'connected_gene': 'LOC101927523', 'score': 0.29}, {'connected_gene': 'GC10P104364', 'score': 0.18}, {'connected_gene': 'CFAP58', 'score': 0.14}]
chr10	GH10I104435	104435943	104436112	0.2	[{'connected_gene': 'LOC101927523', 'score': 0.26}, {'connected_gene': 'GC10P104364', 'score': 0.19}, {'connected_gene': 'CFAP58', 'score': 0.15}]
chr10	GH10I104417	104417496	104418155	0.63	[{'connected_gene': 'CFAP58-AS1', 'score': 10.73}, {'connected_gene': 'CFAP58', 'score': 10.7}, {'connected_gene': 'GC10P104364', 'score': 0.23}, {'connected_gene': 'LOC101927523', 'score': 0.21}]
chr10	GH10I104378	104378911	104378922	0.25	[{'connected_gene': 'CFAP58-AS1', 'score': 11.05}, {'connected_gene': 'CFAP58', 'score': 11.0}, {'connected_gene': 'GC10P104364', 'score': 0.39}, {'connected_gene': 'LOC101927523', 'score': 0.15}]
chr10	GH10I104344	104344764	104344892	0.2	[{'connected_gene': 'CFAP58-AS1', 'score': 0.44}, {'connected_gene': 'CFAP58', 'score': 0.44}]
chr10	GH10I104069	104069183	104070488	0.52	[{'connected_gene': 'MIR936', 'score': 11.57}, {'connected_gene': 'CFAP43', 'score': 6.23}, {'connected_gene': 'GSTO2', 'score': 5.74}, {'connected_gene': 'CFAP58', 'score': 5.08}, {'connected_gene': 'GC10M104086', 'score': 0.37}, {'connected_gene': 'GC10M104085', 'score': 0.37}, {'connected_gene': 'COL17A1', 'score': 0.37}]
chr10	GH10I104314	104314983	104315132	0.4	[{'connected_gene': 'PIR55256', 'score': 550.77}, {'connected_gene': 'ITPRIP', 'score': 12.46}, {'connected_gene': 'CFAP58', 'score': 11.9}, {'connected_gene': 'CFAP58-AS1', 'score': 11.84}, {'connected_gene': 'LOC101927472', 'score': 0.44}]
chr10	GH10I104302	104302954	104303235	0.58	[{'connected_gene': 'GC10P104302', 'score': 550.77}, {'connected_gene': 'CFAP58', 'score': 12.58}, {'connected_gene': 'CFAP58-AS1', 'score': 12.54}, {'connected_gene': 'ITPRIP', 'score': 11.35}, {'connected_gene': 'ENSG00000270075', 'score': 0.44}, {'connected_gene': 'GSTO2', 'score': 0.29}]
chr10	GH10I104309	104309482	104312021	0.86	[{'connected_gene': 'ENSG00000270075', 'score': 550.77}, {'connected_gene': 'GSTO2', 'score': 18.83}, {'connected_gene': 'ITPRIP', 'score': 12.93}, {'connected_gene': 'CFAP58', 'score': 12.47}, {'connected_gene': 'CFAP58-AS1', 'score': 12.42}, {'connected_gene': 'GC10P104302', 'score': 0.44}]