PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000250498	[[23033804, 23034037], [23043958, 23044133], [23057852, 23058175]]	[[23044002, 23044133], [23057852, 23058063]]
ENST00000489532	[[23033806, 23034037], [23035988, 23036065], [23043958, 23043989]]	None
ENST00000535847	[[23033806, 23034037], [23043958, 23044133], [23057941, 23058126]]	[[23044057, 23044133], [23057941, 23058063]]
ENST00000538631	[[23033807, 23034037], [23057852, 23058063]]	[[23034011, 23034037], [23057852, 23058063]]
ENST00000543337	[[23033903, 23034037], [23043958, 23044133], [23057936, 23058128]]	[[23044002, 23044133], [23057936, 23058063]]
NM_001344	[[23033806, 23034037], [23043958, 23044133], [23057852, 23058143]]	[[23044002, 23044133], [23057852, 23058063]]

Promoter

Chrom	Start	End	Description
chr14	23058063	23058144	CAGE_peak_1_at_DAD1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I022854	22854612	22855906	0.69	[{'connected_gene': 'SLC7A7', 'score': 12.92}, {'connected_gene': 'MRPL52', 'score': 12.92}, {'connected_gene': 'REM2', 'score': 12.05}, {'connected_gene': 'OXA1L', 'score': 11.65}, {'connected_gene': 'DAD1', 'score': 10.63}, {'connected_gene': 'OR6J1', 'score': 9.92}, {'connected_gene': 'HAUS4', 'score': 7.29}, {'connected_gene': 'GC14M022854', 'score': 0.77}, {'connected_gene': 'ENSG00000212335', 'score': 0.77}, {'connected_gene': 'GC14P024190', 'score': 0.39}]
chr14	GH14I022590	22590957	22592203	0.31	[{'connected_gene': 'ABHD4', 'score': 13.43}, {'connected_gene': 'OR6J1', 'score': 11.46}, {'connected_gene': 'OXA1L', 'score': 10.46}, {'connected_gene': 'DAD1', 'score': 6.43}, {'connected_gene': 'GC14P024211', 'score': 0.44}]
chr14	GH14I022596	22596912	22599903	2.21	[{'connected_gene': 'ABHD4', 'score': 576.16}, {'connected_gene': 'ENSG00000275552', 'score': 550.77}, {'connected_gene': 'GC14P024211', 'score': 550.77}, {'connected_gene': 'NGDN', 'score': 17.45}, {'connected_gene': 'PRMT5', 'score': 14.47}, {'connected_gene': 'SLC7A8', 'score': 14.09}, {'connected_gene': 'DAD1', 'score': 8.65}]
chr14	GH14I022629	22629766	22630921	0.2	[{'connected_gene': 'MMP14', 'score': 10.39}, {'connected_gene': 'DAD1', 'score': 6.32}, {'connected_gene': 'OR6E1P', 'score': 5.69}, {'connected_gene': 'OR6J1', 'score': 0.39}, {'connected_gene': 'ENSG00000275552', 'score': 0.29}]
chr14	GH14I022504	22504826	22571549	2.32	[{'connected_gene': 'TRAJ6', 'score': 550.77}, {'connected_gene': 'TRAJ7', 'score': 550.77}, {'connected_gene': 'GC14P024183', 'score': 550.77}, {'connected_gene': 'GC14P024201', 'score': 550.77}, {'connected_gene': 'ABHD4', 'score': 21.9}, {'connected_gene': 'DAD1', 'score': 19.21}, {'connected_gene': 'C14orf93', 'score': 18.88}, {'connected_gene': 'MMP14', 'score': 17.08}, {'connected_gene': 'LOC105370399', 'score': 15.03}, {'connected_gene': 'TRAC', 'score': 13.94}, {'connected_gene': 'NGDN', 'score': 13.83}, {'connected_gene': 'OR6J1', 'score': 11.89}, {'connected_gene': 'SLC7A7', 'score': 11.89}, {'connected_gene': 'MRPL52', 'score': 11.89}, {'connected_gene': 'ACIN1', 'score': 11.36}, {'connected_gene': 'OXA1L', 'score': 11.15}, {'connected_gene': 'PABPN1', 'score': 11.11}, {'connected_gene': 'RBM23', 'score': 10.45}, {'connected_gene': 'CDH24', 'score': 10.41}, {'connected_gene': 'SLC22A17', 'score': 9.97}, {'connected_gene': 'PRMT5-AS1', 'score': 9.9}, {'connected_gene': 'PRMT5', 'score': 9.81}, {'connected_gene': 'PPP1R3E', 'score': 9.71}, {'connected_gene': 'CEBPE', 'score': 5.7}, {'connected_gene': 'LOC101926933', 'score': 5.05}, {'connected_gene': 'TRAV18', 'score': 4.67}, {'connected_gene': 'PSMB11', 'score': 3.16}, {'connected_gene': 'REM2', 'score': 2.14}, {'connected_gene': 'GC14P024189', 'score': 0.77}, {'connected_gene': 'TRAJ5', 'score': 0.77}, {'connected_gene': 'TRAJ9', 'score': 0.77}, {'connected_gene': 'GC14P024206', 'score': 0.77}, {'connected_gene': 'TRAJ8', 'score': 0.77}, {'connected_gene': 'TRAJ3', 'score': 0.77}, {'connected_gene': 'GC14P024202', 'score': 0.77}, {'connected_gene': 'GC14P024196', 'score': 0.77}, {'connected_gene': 'TRAJ10', 'score': 0.77}, {'connected_gene': 'TRAJ4', 'score': 0.77}, {'connected_gene': 'TRAJ12', 'score': 0.44}, {'connected_gene': 'TRAJ15', 'score': 0.44}, {'connected_gene': 'TRAJ16', 'score': 0.44}, {'connected_gene': 'TRAJ11', 'score': 0.44}, {'connected_gene': 'TRAJ1', 'score': 0.44}, {'connected_gene': 'TRAJ2', 'score': 0.44}, {'connected_gene': 'TRAJ14', 'score': 0.44}, {'connected_gene': 'TRAJ13', 'score': 0.44}, {'connected_gene': 'TRAJ19', 'score': 0.39}, {'connected_gene': 'TRAJ17', 'score': 0.39}, {'connected_gene': 'TRAJ21', 'score': 0.39}, {'connected_gene': 'TRAJ20', 'score': 0.39}, {'connected_gene': 'TRAJ18', 'score': 0.39}, {'connected_gene': 'TRAJ22', 'score': 0.37}, {'connected_gene': 'TRAJ24', 'score': 0.37}, {'connected_gene': 'TRAJ25', 'score': 0.37}, {'connected_gene': 'LINC02332', 'score': 0.37}, {'connected_gene': 'TRAJ23', 'score': 0.37}, {'connected_gene': 'TRAJ26', 'score': 0.37}, {'connected_gene': 'GC14P024184', 'score': 0.37}, {'connected_gene': 'GC14P024208', 'score': 0.37}, {'connected_gene': 'TRAJ29', 'score': 0.34}, {'connected_gene': 'TRAJ27', 'score': 0.34}, {'connected_gene': 'TRAJ28', 'score': 0.34}, {'connected_gene': 'TRAJ31', 'score': 0.31}, {'connected_gene': 'TRAJ32', 'score': 0.31}, {'connected_gene': 'TRAJ33', 'score': 0.31}, {'connected_gene': 'GC14P024188', 'score': 0.31}, {'connected_gene': 'GC14P024200', 'score': 0.31}, {'connected_gene': 'TRAJ30', 'score': 0.31}, {'connected_gene': 'TRAJ35', 'score': 0.29}, {'connected_gene': 'TRAJ34', 'score': 0.29}, {'connected_gene': 'TRAJ36', 'score': 0.29}, {'connected_gene': 'TRA', 'score': 0.02}]
chr14	GH14I023482	23481932	23484339	0.67	[{'connected_gene': 'NGDN', 'score': 6.25}, {'connected_gene': 'DAD1', 'score': 5.15}, {'connected_gene': 'ZFHX2-AS1', 'score': 0.31}, {'connected_gene': 'THTPA', 'score': 0.31}]
chr14	GH14I022571	22571824	22573513	1.03	[{'connected_gene': 'DAD1', 'score': 18.81}, {'connected_gene': 'OR6J1', 'score': 11.94}, {'connected_gene': 'ABHD4', 'score': 11.49}, {'connected_gene': 'MMP14', 'score': 10.86}, {'connected_gene': 'OXA1L', 'score': 10.71}, {'connected_gene': 'SLC7A7', 'score': 10.68}, {'connected_gene': 'MRPL52', 'score': 10.68}, {'connected_gene': 'PRMT5', 'score': 9.82}, {'connected_gene': 'C14orf93', 'score': 9.25}, {'connected_gene': 'LINC02332', 'score': 0.37}]
chr14	GH14I022579	22579955	22580515	0.46	[{'connected_gene': 'DAD1', 'score': 18.51}, {'connected_gene': 'OR6J1', 'score': 11.3}, {'connected_gene': 'OXA1L', 'score': 10.24}, {'connected_gene': 'LINC02332', 'score': 0.34}]
chr14	GH14I022582	22582858	22586231	0.38	[{'connected_gene': 'DAD1', 'score': 19.15}, {'connected_gene': 'OR6J1', 'score': 11.18}, {'connected_gene': 'MMP14', 'score': 10.81}, {'connected_gene': 'SLC7A7', 'score': 10.81}, {'connected_gene': 'MRPL52', 'score': 10.81}, {'connected_gene': 'LINC02332', 'score': 0.31}]
chr14	GH14I023180	23180074	23180600	0.4	[{'connected_gene': 'DAD1', 'score': 5.91}, {'connected_gene': 'CDH24', 'score': 4.49}, {'connected_gene': 'SLC7A8', 'score': 0.77}, {'connected_gene': 'RNU6-1138P', 'score': 0.34}]
chr14	GH14I022587	22587492	22590655	2.5	[{'connected_gene': 'DAD1', 'score': 565.06}, {'connected_gene': 'ABHD4', 'score': 14.0}, {'connected_gene': 'OR6J1', 'score': 11.45}, {'connected_gene': 'SLC22A17', 'score': 11.36}, {'connected_gene': 'OXA1L', 'score': 10.46}, {'connected_gene': 'MMP14', 'score': 10.17}, {'connected_gene': 'REM2', 'score': 3.35}, {'connected_gene': 'LINC02332', 'score': 0.29}]
chr14	GH14I022844	22844318	22854244	2.09	[{'connected_gene': 'PIR54043', 'score': 550.77}, {'connected_gene': 'NGDN', 'score': 14.43}, {'connected_gene': 'LRP10', 'score': 12.08}, {'connected_gene': 'REM2', 'score': 12.03}, {'connected_gene': 'OXA1L', 'score': 11.66}, {'connected_gene': 'PABPN1', 'score': 11.41}, {'connected_gene': 'RBM23', 'score': 10.81}, {'connected_gene': 'DAD1', 'score': 10.63}, {'connected_gene': 'PRMT5-AS1', 'score': 10.17}, {'connected_gene': 'THTPA', 'score': 9.72}, {'connected_gene': 'HAUS4', 'score': 8.7}, {'connected_gene': 'SLC7A7', 'score': 7.32}, {'connected_gene': 'C14orf119', 'score': 1.64}, {'connected_gene': 'ACIN1', 'score': 1.43}, {'connected_gene': 'GC14M022854', 'score': 0.77}, {'connected_gene': 'ENSG00000212335', 'score': 0.77}, {'connected_gene': 'MMP14', 'score': 0.39}]