PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370986	[[68150743, 68151221], [68151707, 68151809], [68152032, 68152270], [68153343, 68154021]]	[[68151177, 68151221], [68151707, 68151809], [68152032, 68152270], [68153343, 68153457]]
ENST00000370985	[[68150883, 68151221], [68152032, 68152270], [68153343, 68153570]]	[[68151177, 68151221], [68152032, 68152270], [68153343, 68153457]]
ENST00000460575	[[68150911, 68151221], [68151707, 68152271]]	None
ENST00000484245	[[68151358, 68151809], [68152032, 68152269]]	None
NM_001199741	[[68150859, 68151221], [68152032, 68152270], [68153343, 68154021]]	[[68151177, 68151221], [68152032, 68152270], [68153343, 68153457]]
NM_001199742	[[68150859, 68151221], [68151707, 68151809], [68153343, 68154021]]	[[68151177, 68151221], [68151707, 68151809], [68153343, 68153380]]
NM_001924	[[68150859, 68151221], [68151707, 68151809], [68152032, 68152270], [68153343, 68154021]]	[[68151177, 68151221], [68151707, 68151809], [68152032, 68152270], [68153343, 68153457]]

Promoter

Chrom	Start	End	Description
chr1	68150874	68150890	CAGE_peak_1_at_GADD45A_5end
chr1	68151730	68151791	CAGE_peak_2_at_GADD45A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I067720	67720907	67721604	0.38	[{'connected_gene': 'WDR78', 'score': 4.31}, {'connected_gene': 'LOC105378781', 'score': 0.29}, {'connected_gene': 'GADD45A', 'score': 0.28}, {'connected_gene': 'GNG12', 'score': 0.14}]
chr1	GH01I067625	67625643	67635800	1.46	[{'connected_gene': 'MIER1', 'score': 13.81}, {'connected_gene': 'GADD45A', 'score': 11.63}, {'connected_gene': 'SERBP1', 'score': 11.16}, {'connected_gene': 'RNU6-1031P', 'score': 10.09}, {'connected_gene': 'CTBP2P8', 'score': 9.98}, {'connected_gene': 'DIRAS3', 'score': 6.15}, {'connected_gene': 'RN7SL392P', 'score': 0.31}, {'connected_gene': 'LOC105378780', 'score': 0.2}]
chr1	GH01I067700	67700047	67702104	1.7	[{'connected_gene': 'GNG12', 'score': 5.16}, {'connected_gene': 'WDR78', 'score': 4.95}, {'connected_gene': 'GADD45A', 'score': 0.37}, {'connected_gene': 'LOC105378781', 'score': 0.23}]
chr1	GH01I067757	67757668	67762263	1.36	[{'connected_gene': 'GNG12', 'score': 16.62}, {'connected_gene': 'GADD45A', 'score': 11.89}, {'connected_gene': 'RNU6-1031P', 'score': 11.36}, {'connected_gene': 'GNG12-AS1', 'score': 11.18}, {'connected_gene': 'LOC105378781', 'score': 0.44}, {'connected_gene': 'GC01M067773', 'score': 0.39}]
chr1	GH01I067763	67763169	67767835	1.15	[{'connected_gene': 'GNG12', 'score': 16.34}, {'connected_gene': 'GADD45A', 'score': 11.66}, {'connected_gene': 'RNU6-1031P', 'score': 10.79}, {'connected_gene': 'GNG12-AS1', 'score': 10.64}, {'connected_gene': 'GC01M067773', 'score': 0.44}, {'connected_gene': 'LOC105378781', 'score': 0.39}]
chr1	GH01I067721	67721682	67727425	1.5	[{'connected_gene': 'GNG12', 'score': 5.12}, {'connected_gene': 'LOC105378781', 'score': 0.31}, {'connected_gene': 'GADD45A', 'score': 0.28}]
chr1	GH01I067706	67706826	67707724	0.66	[{'connected_gene': 'GADD45A', 'score': 12.32}, {'connected_gene': 'WDR78', 'score': 4.54}, {'connected_gene': 'LOC105378781', 'score': 0.25}, {'connected_gene': 'GNG12', 'score': 0.13}]
chr1	GH01I067681	67681905	67690189	2.35	[{'connected_gene': 'GADD45A', 'score': 550.77}, {'connected_gene': 'MIER1', 'score': 29.36}, {'connected_gene': 'SERBP1', 'score': 10.64}, {'connected_gene': 'WDR78', 'score': 4.41}, {'connected_gene': 'LOC105378781', 'score': 0.2}]
chr1	GH01I067731	67731676	67739750	1.42	[{'connected_gene': 'GADD45A', 'score': 12.12}, {'connected_gene': 'SERBP1', 'score': 11.73}, {'connected_gene': 'RNU6-1031P', 'score': 10.23}, {'connected_gene': 'LOC105378781', 'score': 0.37}, {'connected_gene': 'GNG12', 'score': 0.15}]
chr1	GH01I067712	67712925	67714763	1.27	[{'connected_gene': 'GADD45A', 'score': 12.07}, {'connected_gene': 'SERBP1', 'score': 11.73}, {'connected_gene': 'RNU7-80P', 'score': 11.14}, {'connected_gene': 'LOC105378781', 'score': 0.26}, {'connected_gene': 'GNG12', 'score': 0.13}]
chr1	GH01I067574	67574585	67577258	0.96	[{'connected_gene': 'GADD45A', 'score': 12.93}, {'connected_gene': 'RNU6-1031P', 'score': 11.08}, {'connected_gene': 'LOC105378780', 'score': 0.39}, {'connected_gene': 'RN7SL392P', 'score': 0.18}]
chr1	GH01I067740	67740298	67742104	0.74	[{'connected_gene': 'GADD45A', 'score': 11.66}, {'connected_gene': 'RNU6-1031P', 'score': 9.91}, {'connected_gene': 'GNG12-AS1', 'score': 9.67}, {'connected_gene': 'GNG12', 'score': 9.67}, {'connected_gene': 'LOC105378781', 'score': 0.39}]
chr1	GH01I067755	67755958	67757064	0.31	[{'connected_gene': 'GADD45A', 'score': 11.89}, {'connected_gene': 'RNU6-1031P', 'score': 11.36}, {'connected_gene': 'GNG12-AS1', 'score': 10.67}, {'connected_gene': 'GNG12', 'score': 10.67}, {'connected_gene': 'LOC105378781', 'score': 0.77}, {'connected_gene': 'GC01M067773', 'score': 0.37}]
chr1	GH01I067580	67580039	67581428	0.59	[{'connected_gene': 'GADD45A', 'score': 11.4}, {'connected_gene': 'RNU6-1031P', 'score': 11.06}, {'connected_gene': 'RNU7-80P', 'score': 10.53}, {'connected_gene': 'LOC105378780', 'score': 0.37}, {'connected_gene': 'RN7SL392P', 'score': 0.18}]
chr1	GH01I067569	67569074	67574045	1.53	[{'connected_gene': 'GADD45A', 'score': 11.38}, {'connected_gene': 'RNU6-1031P', 'score': 11.08}, {'connected_gene': 'RNU7-80P', 'score': 10.91}, {'connected_gene': 'LOC105378780', 'score': 0.44}, {'connected_gene': 'RN7SL392P', 'score': 0.17}]
chr1	GH01I067703	67703509	67705474	0.38	[{'connected_gene': 'GADD45A', 'score': 0.37}, {'connected_gene': 'LOC105378781', 'score': 0.25}, {'connected_gene': 'GNG12', 'score': 0.13}]
chr1	GH01I067742	67742590	67745109	0.56	[{'connected_gene': 'GADD45A', 'score': 11.54}, {'connected_gene': 'LOC105378781', 'score': 0.39}, {'connected_gene': 'GNG12', 'score': 0.17}]
chr1	GH01I067707	67706278	67706427	0.63	[{'connected_gene': 'GADD45A', 'score': 0.34}, {'connected_gene': 'LOC105378781', 'score': 0.25}, {'connected_gene': 'GNG12', 'score': 0.13}]
chr1	GH01I067708	67708758	67708907	0.58	[{'connected_gene': 'GADD45A', 'score': 12.32}, {'connected_gene': 'LOC105378781', 'score': 0.25}, {'connected_gene': 'GNG12', 'score': 0.13}]
chr1	GH01I067691	67691698	67691847	0.68	[{'connected_gene': 'GADD45A', 'score': 0.44}, {'connected_gene': 'LOC105378781', 'score': 0.21}]
chr1	GH01I067694	67694859	67695672	0.89	[{'connected_gene': 'GADD45A', 'score': 0.39}, {'connected_gene': 'LOC105378781', 'score': 0.22}]
chr1	GH01I067598	67598782	67599935	0.31	[{'connected_gene': 'GADD45A', 'score': 10.95}, {'connected_gene': 'LOC105378780', 'score': 0.28}, {'connected_gene': 'RN7SL392P', 'score': 0.22}]
chr1	GH01I067652	67652418	67653521	1.16	[{'connected_gene': 'GADD45A', 'score': 13.24}, {'connected_gene': 'RNU7-80P', 'score': 10.74}, {'connected_gene': 'RN7SL392P', 'score': 0.77}, {'connected_gene': 'HNRNPCP9', 'score': 0.44}, {'connected_gene': 'LOC105378780', 'score': 0.16}]
chr1	GH01I067643	67643164	67647808	1.38	[{'connected_gene': 'GADD45A', 'score': 10.99}, {'connected_gene': 'RNU7-80P', 'score': 10.74}, {'connected_gene': 'RNU6-1031P', 'score': 9.76}, {'connected_gene': 'RN7SL392P', 'score': 0.39}, {'connected_gene': 'HNRNPCP9', 'score': 0.37}, {'connected_gene': 'LOC105378780', 'score': 0.18}]
chr1	GH01I067717	67717478	67718438	0.85	[{'connected_gene': 'GADD45A', 'score': 12.05}, {'connected_gene': 'RNU7-80P', 'score': 11.15}, {'connected_gene': 'RNU6-1031P', 'score': 10.33}, {'connected_gene': 'LOC105378781', 'score': 0.28}, {'connected_gene': 'GNG12', 'score': 0.13}]
chr1	GH01I067745	67745371	67755891	1.62	[{'connected_gene': 'GADD45A', 'score': 12.52}, {'connected_gene': 'RNU7-80P', 'score': 12.22}, {'connected_gene': 'RNU6-1031P', 'score': 11.37}, {'connected_gene': 'GNG12-AS1', 'score': 10.66}, {'connected_gene': 'GNG12', 'score': 10.66}, {'connected_gene': 'LOC105378781', 'score': 0.77}]
chr1	GH01I067715	67715104	67716342	0.46	[{'connected_gene': 'GADD45A', 'score': 12.05}, {'connected_gene': 'RNU7-80P', 'score': 11.14}, {'connected_gene': 'LOC105378781', 'score': 0.28}, {'connected_gene': 'GNG12', 'score': 0.13}]
chr1	GH01I067716	67716504	67717346	0.82	[{'connected_gene': 'GADD45A', 'score': 12.05}, {'connected_gene': 'RNU7-80P', 'score': 11.14}, {'connected_gene': 'LOC105378781', 'score': 0.28}, {'connected_gene': 'GNG12', 'score': 0.13}]
chr1	GH01I067710	67710280	67712379	1.18	[{'connected_gene': 'GADD45A', 'score': 12.29}, {'connected_gene': 'RNU7-80P', 'score': 11.13}, {'connected_gene': 'LOC105378781', 'score': 0.26}, {'connected_gene': 'GNG12', 'score': 0.13}]
chr1	GH01I067534	67534228	67536433	1.43	[{'connected_gene': 'GADD45A', 'score': 11.15}, {'connected_gene': 'RNU7-80P', 'score': 10.93}, {'connected_gene': 'GNG12-AS1', 'score': 9.67}, {'connected_gene': 'GNG12', 'score': 9.67}, {'connected_gene': 'SLC35D1', 'score': 2.07}, {'connected_gene': 'GC01P067542', 'score': 0.44}, {'connected_gene': 'LINC01702', 'score': 0.39}]
chr1	GH01I067530	67530878	67531027	0.2	[{'connected_gene': 'GADD45A', 'score': 11.14}, {'connected_gene': 'RNU7-80P', 'score': 10.56}, {'connected_gene': 'GNG12-AS1', 'score': 9.66}, {'connected_gene': 'GNG12', 'score': 9.66}, {'connected_gene': 'LINC01702', 'score': 0.44}, {'connected_gene': 'GC01P067542', 'score': 0.39}]
chr1	GH01I067531	67531675	67533917	0.85	[{'connected_gene': 'GADD45A', 'score': 11.14}, {'connected_gene': 'RNU7-80P', 'score': 10.55}, {'connected_gene': 'GNG12-AS1', 'score': 9.67}, {'connected_gene': 'GNG12', 'score': 9.66}, {'connected_gene': 'GC01P067542', 'score': 0.44}, {'connected_gene': 'LINC01702', 'score': 0.39}]
chr1	GH01I067679	67679198	67680863	0.38	[{'connected_gene': 'GADD45A', 'score': 0.44}, {'connected_gene': 'HNRNPCP9', 'score': 0.37}]
chr1	GH01I067719	67719941	67720504	0.82	[{'connected_gene': 'LOC105378781', 'score': 0.29}, {'connected_gene': 'GADD45A', 'score': 0.28}, {'connected_gene': 'GNG12', 'score': 0.14}]
chr1	GH01I067521	67521585	67522679	0.69	[{'connected_gene': 'LINC01702', 'score': 550.77}, {'connected_gene': 'RNU7-80P', 'score': 11.3}, {'connected_gene': 'GADD45A', 'score': 10.05}, {'connected_gene': 'GC01P067513', 'score': 0.44}]
chr1	GH01I067674	67674188	67675727	1.24	[{'connected_gene': 'RNU7-80P', 'score': 10.4}, {'connected_gene': 'HNRNPCP9', 'score': 0.39}, {'connected_gene': 'GADD45A', 'score': 0.39}]
chr1	GH01I067668	67668425	67669482	0.54	[{'connected_gene': 'HNRNPCP9', 'score': 0.44}, {'connected_gene': 'GADD45A', 'score': 0.37}]
chr1	GH01I067664	67664158	67664307	0.78	[{'connected_gene': 'HNRNPCP9', 'score': 0.77}, {'connected_gene': 'GADD45A', 'score': 0.34}]
chr1	GH01I067513	67513665	67514970	0.85	[{'connected_gene': 'GC01P067513', 'score': 550.77}, {'connected_gene': 'RNU7-80P', 'score': 10.96}, {'connected_gene': 'RNU6-1031P', 'score': 10.63}, {'connected_gene': 'GADD45A', 'score': 10.6}, {'connected_gene': 'LINC01702', 'score': 0.44}]