PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000495912	[[119883491, 119887231], [119892158, 119892317], [119962486, 119962623], [119962849, 119962967]]	[[119892313, 119892317], [119962486, 119962623], [119962849, 119962945]]
ENST00000315843	[[119884327, 119887231], [119892158, 119892317], [119899971, 119900208], [119904145, 119904241], [119905504, 119905630], [119911785, 119911896], [119912141, 119912271], [119962486, 119962623], [119962849, 119963142]]	[[119885878, 119887231], [119892158, 119892317], [119899971, 119900208], [119904145, 119904241], [119905504, 119905630], [119911785, 119911896], [119912141, 119912271], [119962486, 119962623], [119962849, 119962945]]
ENST00000464295	[[119884327, 119887231], [119892158, 119892317], [119899971, 119900208], [119904145, 119904241], [119905504, 119905630], [119911785, 119911896], [119912141, 119912271], [119962486, 119962623], [119962849, 119963325], [120003875, 120003941]]	[[119885878, 119887231], [119892158, 119892317], [119899971, 119900208], [119904145, 119904241], [119905504, 119905630], [119911785, 119911896], [119912141, 119912271], [119962486, 119962623], [119962849, 119962945]]
ENST00000461057	[[119885804, 119887231], [119892158, 119892317], [119899971, 119900208], [119904145, 119904241], [119905516, 119905630], [119911785, 119911896], [119912141, 119912271], [119962486, 119962623], [119962849, 119962963]]	[[119885878, 119887231], [119892158, 119892317], [119899971, 119900208], [119904145, 119904241], [119905516, 119905630], [119911785, 119911896], [119912141, 119912271], [119962486, 119962623], [119962849, 119962945]]
ENST00000481907	[[119961706, 119962623], [119962849, 119963325], [120003875, 120003921]]	None
NM_153002	[[119884327, 119887231], [119892158, 119892317], [119899971, 119900208], [119904145, 119904241], [119905504, 119905630], [119911785, 119911896], [119912141, 119912271], [119962486, 119962623], [119962849, 119963142]]	[[119885878, 119887231], [119892158, 119892317], [119899971, 119900208], [119904145, 119904241], [119905504, 119905630], [119911785, 119911896], [119912141, 119912271], [119962486, 119962623], [119962849, 119962945]]
NM_001168271	[[119884327, 119887231], [119892158, 119892317], [119899971, 119900208], [119904145, 119904241], [119905516, 119905630], [119911785, 119911896], [119912141, 119912271], [119962486, 119962623], [119962849, 119963142]]	[[119885878, 119887231], [119892158, 119892317], [119899971, 119900208], [119904145, 119904241], [119905516, 119905630], [119911785, 119911896], [119912141, 119912271], [119962486, 119962623], [119962849, 119962945]]

Promoter

Chrom	Start	End	Description
chr3	120004062	120004083	CAGE_peak_1_at_GPR156_5end
chr3	120004237	120004246	CAGE_peak_5_at_GPR156_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I120214	120214020	120214533	0.31	[{'connected_gene': 'LOC442087', 'score': 5.0}, {'connected_gene': 'CD80', 'score': 4.75}, {'connected_gene': 'ENSG00000206721', 'score': 0.77}, {'connected_gene': 'PIR62989', 'score': 0.29}, {'connected_gene': 'GPR156', 'score': 0.19}]
chr3	GH03I120135	120135336	120136179	0.76	[{'connected_gene': 'GSK3B', 'score': 7.77}, {'connected_gene': 'GPR156', 'score': 4.94}, {'connected_gene': 'PIR33291', 'score': 0.44}, {'connected_gene': 'RN7SL397P', 'score': 0.39}, {'connected_gene': 'ENSG00000242622', 'score': 0.26}]
chr3	GH03I120151	120151502	120154918	1.26	[{'connected_gene': 'GSK3B', 'score': 7.72}, {'connected_gene': 'GPR156', 'score': 4.42}, {'connected_gene': 'PIR46565', 'score': 0.77}, {'connected_gene': 'LOC105374065', 'score': 0.44}, {'connected_gene': 'GC03P120211', 'score': 0.22}]
chr3	GH03I120157	120157162	120164053	1.51	[{'connected_gene': 'GSK3B', 'score': 8.93}, {'connected_gene': 'GPR156', 'score': 4.78}, {'connected_gene': 'LOC100130701', 'score': 4.21}, {'connected_gene': 'PIR46565', 'score': 0.39}, {'connected_gene': 'LOC105374065', 'score': 0.39}, {'connected_gene': 'GC03P120211', 'score': 0.25}]
chr3	GH03I120175	120175836	120178797	1.11	[{'connected_gene': 'GSK3B', 'score': 8.27}, {'connected_gene': 'GPR156', 'score': 4.45}, {'connected_gene': 'LOC100130701', 'score': 4.23}, {'connected_gene': 'PIR46565', 'score': 0.31}, {'connected_gene': 'GC03P120211', 'score': 0.29}, {'connected_gene': 'LOC105374065', 'score': 0.29}]
chr3	GH03I120409	120409280	120411543	0.51	[{'connected_gene': 'GPR156', 'score': 6.84}, {'connected_gene': 'MIR198', 'score': 0.39}, {'connected_gene': 'FSTL1', 'score': 0.26}, {'connected_gene': 'LOC100130701', 'score': 0.21}]
chr3	GH03I120202	120202584	120203989	0.89	[{'connected_gene': 'GPR156', 'score': 15.19}, {'connected_gene': 'GSK3B', 'score': 7.54}, {'connected_gene': 'GC03P120211', 'score': 0.44}, {'connected_gene': 'PIR46565', 'score': 0.23}]
chr3	GH03I120404	120404400	120406975	0.2	[{'connected_gene': 'GPR156', 'score': 6.38}, {'connected_gene': 'LRRC58', 'score': 4.69}, {'connected_gene': 'MIR198', 'score': 0.44}, {'connected_gene': 'FSTL1', 'score': 0.25}, {'connected_gene': 'LOC100130701', 'score': 0.22}]
chr3	GH03I120344	120344330	120344767	0.49	[{'connected_gene': 'GPR156', 'score': 11.12}, {'connected_gene': 'LRRC58', 'score': 0.77}, {'connected_gene': 'GC03M120325', 'score': 0.37}]
chr3	GH03I120341	120341714	120341803	0.43	[{'connected_gene': 'GPR156', 'score': 11.12}, {'connected_gene': 'LRRC58', 'score': 0.44}, {'connected_gene': 'GC03M120325', 'score': 0.39}]
chr3	GH03I120416	120416037	120422714	1.36	[{'connected_gene': 'GPR156', 'score': 23.96}, {'connected_gene': 'FSTL1', 'score': 13.26}, {'connected_gene': 'LOC100130701', 'score': 7.58}, {'connected_gene': 'LRRC58', 'score': 6.29}, {'connected_gene': 'MIR198', 'score': 0.34}]
chr3	GH03I120244	120244354	120244523	0.75	[{'connected_gene': 'GPR156', 'score': 18.38}, {'connected_gene': 'PIR62989', 'score': 0.77}, {'connected_gene': 'ENSG00000206721', 'score': 0.29}]
chr3	GH03I120275	120275714	120275863	0.38	[{'connected_gene': 'GPR156', 'score': 0.44}, {'connected_gene': 'PIR62989', 'score': 0.31}]
chr3	GH03I120274	120274670	120275227	0.88	[{'connected_gene': 'GPR156', 'score': 0.39}, {'connected_gene': 'PIR62989', 'score': 0.31}]
chr3	GH03I120284	120284800	120285601	0.76	[{'connected_gene': 'GPR156', 'score': 555.95}, {'connected_gene': 'PIR32890', 'score': 550.77}]
chr3	GH03I119626	119626787	119631999	1.5	[{'connected_gene': 'ADPRH', 'score': 32.83}, {'connected_gene': 'MAATS1', 'score': 19.08}, {'connected_gene': 'RPL10P7', 'score': 16.7}, {'connected_gene': 'COX17', 'score': 13.97}, {'connected_gene': 'CD80', 'score': 12.06}, {'connected_gene': 'POPDC2', 'score': 11.76}, {'connected_gene': 'ARHGAP31', 'score': 11.07}, {'connected_gene': 'PLA1A', 'score': 5.9}, {'connected_gene': 'GPR156', 'score': 5.1}, {'connected_gene': 'GSK3B', 'score': 1.98}, {'connected_gene': 'GC03M119637', 'score': 0.44}, {'connected_gene': 'LOC105374062', 'score': 0.34}]
chr3	GH03I119612	119612368	119617120	0.31	[{'connected_gene': 'ADPRH', 'score': 24.93}, {'connected_gene': 'POPDC2', 'score': 11.88}, {'connected_gene': 'CD80', 'score': 11.4}, {'connected_gene': 'COX17', 'score': 7.53}, {'connected_gene': 'RPL10P7', 'score': 5.87}, {'connected_gene': 'GPR156', 'score': 5.68}, {'connected_gene': 'LOC105374062', 'score': 0.44}, {'connected_gene': 'PLA1A', 'score': 0.37}, {'connected_gene': 'GC03M119637', 'score': 0.34}]
chr3	GH03I120412	120412681	120413840	0.2	[{'connected_gene': 'LRRC58', 'score': 6.25}, {'connected_gene': 'GPR156', 'score': 5.16}, {'connected_gene': 'MIR198', 'score': 0.37}, {'connected_gene': 'FSTL1', 'score': 0.28}, {'connected_gene': 'LOC100130701', 'score': 0.21}]
chr3	GH03I120507	120507001	120507599	0.69	[{'connected_gene': 'FSTL1', 'score': 11.62}, {'connected_gene': 'GPR156', 'score': 9.99}, {'connected_gene': 'RPL34P9', 'score': 4.88}, {'connected_gene': 'ENSG00000240774', 'score': 0.34}]
chr3	GH03I120503	120503746	120504805	0.38	[{'connected_gene': 'FSTL1', 'score': 12.29}, {'connected_gene': 'GPR156', 'score': 10.0}, {'connected_gene': 'RPL34P9', 'score': 0.44}, {'connected_gene': 'ENSG00000240774', 'score': 0.37}]
chr3	GH03I120422	120422912	120428399	0.86	[{'connected_gene': 'FSTL1', 'score': 12.96}, {'connected_gene': 'GPR156', 'score': 12.14}, {'connected_gene': 'LOC100130701', 'score': 7.46}, {'connected_gene': 'LRRC58', 'score': 4.71}, {'connected_gene': 'GSK3B', 'score': 4.42}, {'connected_gene': 'ADPRH', 'score': 4.13}, {'connected_gene': 'MIR198', 'score': 0.31}]
chr3	GH03I120143	120143820	120149742	1.5	[{'connected_gene': 'LOC105374065', 'score': 550.77}, {'connected_gene': 'GSK3B', 'score': 9.24}, {'connected_gene': 'LOC100130701', 'score': 6.78}, {'connected_gene': 'GPR156', 'score': 5.01}, {'connected_gene': 'COX17', 'score': 1.76}, {'connected_gene': 'PIR46565', 'score': 0.77}]
chr3	GH03I120169	120169370	120172429	0.82	[{'connected_gene': 'LOC100130701', 'score': 24.34}, {'connected_gene': 'GSK3B', 'score': 8.27}, {'connected_gene': 'PIR46565', 'score': 0.34}, {'connected_gene': 'LOC105374065', 'score': 0.31}, {'connected_gene': 'GC03P120211', 'score': 0.28}, {'connected_gene': 'GPR156', 'score': 0.14}]
chr3	GH03I120428	120428737	120431104	0.51	[{'connected_gene': 'LOC100130701', 'score': 6.41}, {'connected_gene': 'GPR156', 'score': 5.52}, {'connected_gene': 'FSTL1', 'score': 0.34}, {'connected_gene': 'MIR198', 'score': 0.29}]
chr3	GH03I120347	120347723	120351131	2.04	[{'connected_gene': 'LOC100130701', 'score': 575.85}, {'connected_gene': 'LRRC58', 'score': 550.77}, {'connected_gene': 'GPR156', 'score': 18.99}, {'connected_gene': 'TMEM39A', 'score': 11.91}, {'connected_gene': 'MAATS1', 'score': 10.11}, {'connected_gene': 'LOC442087', 'score': 5.63}]
chr3	GH03I120111	120111090	120115489	0.89	[{'connected_gene': 'GC03M120113', 'score': 550.77}, {'connected_gene': 'GSK3B', 'score': 5.81}, {'connected_gene': 'LOC100130701', 'score': 5.61}, {'connected_gene': 'GPR156', 'score': 4.69}, {'connected_gene': 'PIR36596', 'score': 0.77}, {'connected_gene': 'ENSG00000242622', 'score': 0.37}]
chr3	GH03I120215	120215134	120215283	0.49	[{'connected_gene': 'ENSG00000206721', 'score': 0.77}, {'connected_gene': 'PIR62989', 'score': 0.29}, {'connected_gene': 'GPR156', 'score': 0.2}]