PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000355834	[[4291923, 4292079], [4301653, 4301824], [4303715, 4304818], [4322366, 4323512]]	[[4301672, 4301824], [4303715, 4304818], [4322366, 4323043]]
ENST00000515012	[[4291977, 4292079], [4301653, 4301824], [4303715, 4304818], [4317362, 4317445], [4317535, 4317697], [4322366, 4323125]]	[[4301672, 4301824], [4303715, 4304818], [4317362, 4317445], [4317535, 4317559]]
ENST00000538529	[[4291977, 4292079], [4301653, 4301824], [4303715, 4304818], [4317362, 4317445], [4317535, 4317697], [4322366, 4323125]]	[[4317627, 4317697], [4322366, 4323043]]
ENST00000503703	[[4291977, 4292079], [4301653, 4301824], [4304037, 4304818], [4314767, 4314841], [4317362, 4317445], [4317535, 4317697], [4322366, 4323513]]	[[4301672, 4301824], [4304037, 4304320]]
ENST00000337872	[[4291977, 4292079], [4301653, 4301824], [4303715, 4304818], [4307864, 4307911], [4314767, 4314841], [4317362, 4317445], [4317535, 4317697], [4322366, 4323513]]	[[4301672, 4301824], [4303715, 4304818], [4307864, 4307911], [4314767, 4314841], [4317362, 4317445], [4317535, 4317697], [4322366, 4323043]]
ENST00000502918	[[4291995, 4292040], [4301653, 4301824], [4303715, 4304001]]	[[4301672, 4301824], [4303715, 4304001]]
ENST00000504302	[[4304353, 4304818], [4322366, 4322424]]	[[4304353, 4304818], [4322366, 4322424]]
ENST00000511458	[[4304458, 4304818], [4314767, 4314841], [4322366, 4322424]]	[[4304458, 4304818], [4314767, 4314775]]
NM_001330625	[[4291923, 4292040], [4301653, 4301824], [4303715, 4304818], [4307864, 4307911], [4314767, 4314841], [4317362, 4317445], [4317535, 4317697], [4322366, 4323513]]	[[4301672, 4301824], [4303715, 4304818], [4307864, 4307911], [4314767, 4314841], [4317362, 4317445], [4317535, 4317697], [4322366, 4323043]]
NR_138481	[[4291923, 4292079], [4301653, 4301824], [4303715, 4304818], [4317362, 4317445], [4317535, 4317697], [4322366, 4323513]]	None
NM_145291	[[4291923, 4292079], [4301653, 4301824], [4303715, 4304818], [4307864, 4307911], [4314767, 4314841], [4317362, 4317445], [4317535, 4317697], [4322366, 4323513]]	[[4301672, 4301824], [4303715, 4304818], [4307864, 4307911], [4314767, 4314841], [4317362, 4317445], [4317535, 4317697], [4322366, 4323043]]

Promoter

Chrom	Start	End	Description
chr4	4291944	4292011	CAGE_peak_1_at_ZBTB49_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I004264	4264966	4272431	1.24	[{'connected_gene': 'TMEM128', 'score': 21.37}, {'connected_gene': 'LYAR', 'score': 16.48}, {'connected_gene': 'ZBTB49', 'score': 1.55}, {'connected_gene': 'GC04P004281', 'score': 0.39}]
chr4	GH04I003368	3368894	3372000	1.88	[{'connected_gene': 'RGS12', 'score': 555.01}, {'connected_gene': 'PIR55428', 'score': 550.77}, {'connected_gene': 'GC04M003368', 'score': 550.77}, {'connected_gene': 'NOP14-AS1', 'score': 14.49}, {'connected_gene': 'TMEM128', 'score': 14.14}, {'connected_gene': 'FAM193A', 'score': 13.56}, {'connected_gene': 'ZBTB49', 'score': 11.05}, {'connected_gene': 'PIR36896', 'score': 0.22}]
chr4	GH04I004323	4323298	4324910	1.05	[{'connected_gene': 'LYAR', 'score': 28.01}, {'connected_gene': 'ZBTB49', 'score': 21.67}, {'connected_gene': 'TMEM128', 'score': 11.01}, {'connected_gene': 'ENSG00000248516', 'score': 0.77}, {'connected_gene': 'PIR59167', 'score': 0.44}]
chr4	GH04I004288	4288775	4291201	1.99	[{'connected_gene': 'LYAR', 'score': 589.65}, {'connected_gene': 'ZBTB49', 'score': 558.35}, {'connected_gene': 'GC04P004281', 'score': 0.44}]
chr4	GH04I004308	4308366	4310361	0.2	[{'connected_gene': 'LYAR', 'score': 33.25}, {'connected_gene': 'ZBTB49', 'score': 9.17}, {'connected_gene': 'GC04M004314', 'score': 0.44}]
chr4	GH04I003491	3491301	3498091	0.82	[{'connected_gene': 'LRPAP1', 'score': 17.26}, {'connected_gene': 'ENSG00000261643', 'score': 16.0}, {'connected_gene': 'ZBTB49', 'score': 10.5}, {'connected_gene': 'FAM193A', 'score': 10.47}, {'connected_gene': 'MFSD10', 'score': 9.98}, {'connected_gene': 'DOK7', 'score': 5.05}, {'connected_gene': 'NOP14-AS1', 'score': 4.56}, {'connected_gene': 'GC04P003490', 'score': 0.77}]
chr4	GH04I003480	3480134	3487793	1.51	[{'connected_gene': 'LRPAP1', 'score': 13.43}, {'connected_gene': 'MFSD10', 'score': 12.33}, {'connected_gene': 'ZBTB49', 'score': 11.37}, {'connected_gene': 'ENSG00000261643', 'score': 11.27}, {'connected_gene': 'LINC00955', 'score': 10.88}, {'connected_gene': 'FAM193A', 'score': 9.85}, {'connected_gene': 'NOP14', 'score': 9.68}, {'connected_gene': 'DOK7', 'score': 8.41}, {'connected_gene': 'HTT-AS', 'score': 5.74}, {'connected_gene': 'MSANTD1', 'score': 4.57}, {'connected_gene': 'GC04M003478', 'score': 0.77}, {'connected_gene': 'GC04P003490', 'score': 0.44}]
chr4	GH04I003953	3953038	3957001	1.47	[{'connected_gene': 'FAM86EP', 'score': 562.14}, {'connected_gene': 'LOC105374358', 'score': 550.77}, {'connected_gene': 'ENSG00000253917', 'score': 550.77}, {'connected_gene': 'GC04P003954', 'score': 550.77}, {'connected_gene': 'ENSG00000271977', 'score': 15.96}, {'connected_gene': 'ZBTB49', 'score': 14.81}, {'connected_gene': 'ENPP7P9', 'score': 11.72}, {'connected_gene': 'STX18', 'score': 10.8}, {'connected_gene': 'TMEM128', 'score': 10.06}]
chr4	GH04I003472	3472215	3474085	0.43	[{'connected_gene': 'NOP14-AS1', 'score': 14.47}, {'connected_gene': 'FAM193A', 'score': 13.56}, {'connected_gene': 'ZBTB49', 'score': 11.05}, {'connected_gene': 'LINC00955', 'score': 10.87}, {'connected_gene': 'LRPAP1', 'score': 5.29}, {'connected_gene': 'DOK7', 'score': 4.84}, {'connected_gene': 'LOC105374355', 'score': 0.77}, {'connected_gene': 'GC04P003463', 'score': 0.44}]
chr4	GH04I003460	3460641	3464780	2	[{'connected_gene': 'DOK7', 'score': 584.85}, {'connected_gene': 'GC04P003463', 'score': 550.77}, {'connected_gene': 'ENSG00000261643', 'score': 5.29}, {'connected_gene': 'ZBTB49', 'score': 4.64}, {'connected_gene': 'HTT', 'score': 4.42}, {'connected_gene': 'LOC105374354', 'score': 0.39}]
chr4	GH04I004252	4252834	4252963	0.62	[{'connected_gene': 'ZBTB49', 'score': 12.33}, {'connected_gene': 'TMEM128', 'score': 0.77}, {'connected_gene': 'GC04P004281', 'score': 0.31}]
chr4	GH04I004277	4277148	4277902	0.31	[{'connected_gene': 'ZBTB49', 'score': 7.21}, {'connected_gene': 'GC04P004281', 'score': 0.77}, {'connected_gene': 'LYAR', 'score': 0.39}, {'connected_gene': 'TMEM128', 'score': 0.31}]
chr4	GH04I004491	4491496	4493261	0.87	[{'connected_gene': 'ZBTB49', 'score': 10.38}, {'connected_gene': 'NSG1', 'score': 10.05}, {'connected_gene': 'PIR62291', 'score': 0.44}, {'connected_gene': 'STX18-IT1', 'score': 0.39}, {'connected_gene': 'STX18', 'score': 0.25}]
chr4	GH04I004665	4665927	4669547	0.94	[{'connected_gene': 'ZBTB49', 'score': 10.75}, {'connected_gene': 'PIR32620', 'score': 0.34}, {'connected_gene': 'GC04M004686', 'score': 0.34}, {'connected_gene': 'STX18-AS1', 'score': 0.13}]
chr4	GH04I004659	4659252	4661064	0.96	[{'connected_gene': 'ZBTB49', 'score': 10.75}, {'connected_gene': 'PIR32620', 'score': 0.37}, {'connected_gene': 'GC04M004686', 'score': 0.31}, {'connected_gene': 'STX18-AS1', 'score': 0.13}]
chr4	GH04I003767	3767134	3767303	0.52	[{'connected_gene': 'ADRA2C', 'score': 550.77}, {'connected_gene': 'NOP14-AS1', 'score': 14.47}, {'connected_gene': 'STX18-AS1', 'score': 11.25}, {'connected_gene': 'ZBTB49', 'score': 11.05}, {'connected_gene': 'STX18', 'score': 10.68}, {'connected_gene': 'GC04P003863', 'score': 0.15}]
chr4	GH04I003765	3765068	3766801	1.94	[{'connected_gene': 'ADRA2C', 'score': 550.77}, {'connected_gene': 'NOP14-AS1', 'score': 14.47}, {'connected_gene': 'STX18-AS1', 'score': 11.25}, {'connected_gene': 'ZBTB49', 'score': 11.05}, {'connected_gene': 'STX18', 'score': 10.68}, {'connected_gene': 'ENSG00000250986', 'score': 0.77}]
chr4	GH04I004540	4540525	4543201	2.4	[{'connected_gene': 'STX18-AS1', 'score': 573.95}, {'connected_gene': 'STX18', 'score': 552.17}, {'connected_gene': 'TMEM128', 'score': 14.63}, {'connected_gene': 'FAM86EP', 'score': 13.2}, {'connected_gene': 'NSG1', 'score': 7.02}, {'connected_gene': 'ZBTB49', 'score': 1.79}, {'connected_gene': 'RPS7P15', 'score': 0.29}]
chr4	GH04I004852	4852512	4853701	0.85	[{'connected_gene': 'STX18-AS1', 'score': 11.28}, {'connected_gene': 'ZBTB49', 'score': 11.05}, {'connected_gene': 'STX18', 'score': 10.71}, {'connected_gene': 'LINC01396', 'score': 0.44}, {'connected_gene': 'MSX1', 'score': 0.44}]