PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000515408	[[112312398, 112312683], [112321531, 112321683], [112327817, 112327945], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112346452, 112346504], [112349017, 112355820]]	[[112312630, 112312683], [112321531, 112321683], [112327817, 112327945], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112346452, 112346504], [112349017, 112349181]]
ENST00000513585	[[112312406, 112312683], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112343634, 112343739], [112346452, 112346504], [112349017, 112349546]]	[[112312406, 112312683], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112343634, 112343739], [112346452, 112346504], [112349017, 112349181]]
ENST00000389063	[[112312432, 112312683], [112321531, 112321683], [112327817, 112327945], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112343634, 112343739], [112346452, 112346504], [112349017, 112356667]]	[[112312630, 112312683], [112321531, 112321683], [112327817, 112327945], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112343634, 112343739], [112346452, 112346504], [112349017, 112349181]]
ENST00000543319	[[112312478, 112312683], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112343634, 112343739], [112346452, 112346504], [112349017, 112349546]]	[[112337101, 112337166], [112337263, 112337371], [112339638, 112339774], [112343634, 112343739], [112346452, 112346504], [112349017, 112349181]]
ENST00000512751	[[112312638, 112312683], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112343634, 112343686]]	[[112328447, 112328467], [112336780, 112336933], [112337053, 112337105]]
ENST00000502635	[[112321528, 112321683], [112327817, 112327945], [112328368, 112328467], [112336780, 112336912]]	None
ENST00000510046	[[112312490, 112312683], [112321531, 112321707]]	None
ENST00000504961	[[112312509, 112312683], [112319670, 112320348]]	None
ENST00000508359	[[112336822, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112343634, 112344004]]	None
NR_038352	[[112312406, 112312683], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112343634, 112343739], [112346452, 112346504], [112349017, 112357892]]	None
NM_001242377	[[112312406, 112312683], [112321531, 112321683], [112327817, 112327945], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112346452, 112346504], [112349017, 112357892]]	[[112312630, 112312683], [112321531, 112321683], [112327817, 112327945], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112346452, 112346504], [112349017, 112349181]]
NM_152624	[[112312406, 112312683], [112321531, 112321683], [112327817, 112327945], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112343634, 112343739], [112346452, 112346504], [112349017, 112357892]]	[[112312630, 112312683], [112321531, 112321683], [112327817, 112327945], [112328368, 112328467], [112336780, 112336933], [112337053, 112337166], [112337263, 112337371], [112339638, 112339774], [112343634, 112343739], [112346452, 112346504], [112349017, 112349181]]

Promoter

Chrom	Start	End	Description
chr5	112312401	112312414	CAGE_peak_3_at_DCP2_5end
chr5	112312416	112312440	CAGE_peak_2_at_DCP2_5end
chr5	112312454	112312535	CAGE_peak_1_at_DCP2_5end
chr5	112312572	112312583	CAGE_peak_4_at_DCP2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I113033	113033503	113035566	0.69	[{'connected_gene': 'YTHDC2', 'score': 10.0}, {'connected_gene': 'MCC', 'score': 6.32}, {'connected_gene': 'DCP2', 'score': 5.17}, {'connected_gene': 'REEP5', 'score': 4.84}, {'connected_gene': 'GC05P113027', 'score': 0.44}, {'connected_gene': 'GC05M113056', 'score': 0.29}]
chr5	GH05I113275	113275789	113275991	0.4	[{'connected_gene': 'YTHDC2', 'score': 4.93}, {'connected_gene': 'DCP2', 'score': 4.64}, {'connected_gene': 'PIR40347', 'score': 0.31}, {'connected_gene': 'ENSG00000232633', 'score': 0.25}, {'connected_gene': 'MCC', 'score': 0.08}]
chr5	GH05I113046	113046924	113048600	1.44	[{'connected_gene': 'MCC', 'score': 14.65}, {'connected_gene': 'YTHDC2', 'score': 8.18}, {'connected_gene': 'DCP2', 'score': 3.06}, {'connected_gene': 'GC05P113027', 'score': 0.37}, {'connected_gene': 'GC05M113056', 'score': 0.37}]
chr5	GH05I113081	113081103	113082944	0.85	[{'connected_gene': 'MCC', 'score': 6.19}, {'connected_gene': 'DCP2', 'score': 4.39}, {'connected_gene': 'REEP5', 'score': 4.15}, {'connected_gene': 'PIR57646', 'score': 0.77}, {'connected_gene': 'GC05P113074', 'score': 0.44}]
chr5	GH05I113093	113093047	113094632	0.54	[{'connected_gene': 'MCC', 'score': 5.97}, {'connected_gene': 'DCP2', 'score': 4.89}, {'connected_gene': 'REEP5', 'score': 3.99}, {'connected_gene': 'PIR57646', 'score': 0.44}, {'connected_gene': 'PIR39781', 'score': 0.37}]
chr5	GH05I112966	112966645	112970490	1.19	[{'connected_gene': 'MCC', 'score': 17.41}, {'connected_gene': 'DCP2', 'score': 13.05}, {'connected_gene': 'GC05M112939', 'score': 0.44}, {'connected_gene': 'LOC105379126', 'score': 0.44}]
chr5	GH05I113094	113094653	113096103	0.52	[{'connected_gene': 'MCC', 'score': 5.88}, {'connected_gene': 'DCP2', 'score': 5.84}, {'connected_gene': 'ENSG00000272389', 'score': 4.66}, {'connected_gene': 'PIR57646', 'score': 0.39}, {'connected_gene': 'PIR39781', 'score': 0.37}]
chr5	GH05I113018	113018263	113024475	1.22	[{'connected_gene': 'MCC', 'score': 25.63}, {'connected_gene': 'DCP2', 'score': 24.98}, {'connected_gene': 'PIR41975', 'score': 0.77}, {'connected_gene': 'PIR31441', 'score': 0.44}]
chr5	GH05I113061	113061348	113065086	0.51	[{'connected_gene': 'DCP2', 'score': 7.82}, {'connected_gene': 'MCC', 'score': 7.02}, {'connected_gene': 'ENSG00000272389', 'score': 4.27}, {'connected_gene': 'REEP5', 'score': 4.01}, {'connected_gene': 'GC05M113056', 'score': 0.77}, {'connected_gene': 'GC05P113027', 'score': 0.28}]
chr5	GH05I113058	113058488	113060253	1.04	[{'connected_gene': 'DCP2', 'score': 13.92}, {'connected_gene': 'MCC', 'score': 9.3}, {'connected_gene': 'GC05M113056', 'score': 0.44}, {'connected_gene': 'GC05P113027', 'score': 0.29}]
chr5	GH05I113028	113028071	113032250	0.54	[{'connected_gene': 'DCP2', 'score': 18.89}, {'connected_gene': 'MCC', 'score': 18.61}, {'connected_gene': 'GC05P113027', 'score': 0.77}, {'connected_gene': 'GC05M113056', 'score': 0.28}]
chr5	GH05I113037	113037996	113040878	1.04	[{'connected_gene': 'DCP2', 'score': 20.32}, {'connected_gene': 'ENSG00000232633', 'score': 11.0}, {'connected_gene': 'MCC', 'score': 9.81}, {'connected_gene': 'GC05P113027', 'score': 0.39}, {'connected_gene': 'GC05M113056', 'score': 0.31}]
chr5	GH05I113036	113036336	113037143	0.38	[{'connected_gene': 'DCP2', 'score': 9.79}, {'connected_gene': 'MCC', 'score': 8.7}, {'connected_gene': 'GC05P113027', 'score': 0.44}, {'connected_gene': 'GC05M113056', 'score': 0.31}]
chr5	GH05I113050	113050376	113052524	1.05	[{'connected_gene': 'DCP2', 'score': 14.09}, {'connected_gene': 'MCC', 'score': 13.96}, {'connected_gene': 'GC05M113056', 'score': 0.37}, {'connected_gene': 'GC05P113027', 'score': 0.34}]
chr5	GH05I112973	112973244	112980608	2.12	[{'connected_gene': 'DCP2', 'score': 570.02}, {'connected_gene': 'LOC105379126', 'score': 550.77}, {'connected_gene': 'YTHDC2', 'score': 42.2}, {'connected_gene': 'MCC', 'score': 18.02}, {'connected_gene': 'PIR41975', 'score': 0.26}]
chr5	GH05I112996	112996124	112996313	0.69	[{'connected_gene': 'DCP2', 'score': 0.37}, {'connected_gene': 'PIR41975', 'score': 0.34}]
chr5	GH05I112160	112160204	112162957	1.61	[{'connected_gene': 'EPB41L4A-AS1', 'score': 555.52}, {'connected_gene': 'PIR48450', 'score': 550.77}, {'connected_gene': 'GC05M112153', 'score': 550.77}, {'connected_gene': 'GC05P112172', 'score': 550.77}, {'connected_gene': 'SNORA13', 'score': 550.77}, {'connected_gene': 'RPS3AP21', 'score': 24.66}, {'connected_gene': 'STARD4-AS1', 'score': 13.87}, {'connected_gene': 'DCP2', 'score': 10.55}, {'connected_gene': 'ENSG00000272389', 'score': 9.95}, {'connected_gene': 'EPB41L4A', 'score': 8.04}]
chr5	GH05I112683	112683787	112686425	0.95	[{'connected_gene': 'ZRSR2P1', 'score': 11.47}, {'connected_gene': 'REEP5', 'score': 9.89}, {'connected_gene': 'DCP2', 'score': 5.6}, {'connected_gene': 'LOC102467216', 'score': 0.77}, {'connected_gene': 'APC', 'score': 0.34}]
chr5	GH05I113024	113024751	113027163	0.43	[{'connected_gene': 'PIR31441', 'score': 550.77}, {'connected_gene': 'GC05P113027', 'score': 550.77}, {'connected_gene': 'DCP2', 'score': 25.95}, {'connected_gene': 'MCC', 'score': 22.75}, {'connected_gene': 'PIR41975', 'score': 0.44}]
chr5	GH05I112934	112934244	112934516	0.27	[{'connected_gene': 'GC05P112932', 'score': 550.77}, {'connected_gene': 'DCP2', 'score': 3.25}, {'connected_gene': 'LOC105379123', 'score': 0.39}, {'connected_gene': 'GC05M112939', 'score': 0.31}]