PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000358430	[[139561197, 139564451], [139565731, 139565827], [139568953, 139569046], [139576700, 139576775], [139581454, 139581574], [139583715, 139583910], [139591592, 139591763], [139597966, 139598058], [139609612, 139610050], [139613057, 139613276]]	[[139563662, 139564451], [139565731, 139565827], [139568953, 139569046], [139576700, 139576775], [139581454, 139581574], [139583715, 139583910], [139591592, 139591763], [139597966, 139598058], [139609612, 139610036]]
ENST00000367652	[[139576516, 139576775], [139581454, 139581574], [139583715, 139583734]]	[[139576516, 139576775], [139581454, 139581574], [139583715, 139583734]]
NM_153235	[[139561197, 139564451], [139565731, 139565827], [139568953, 139569046], [139576700, 139576775], [139581454, 139581574], [139583715, 139583910], [139591592, 139591763], [139597966, 139598058], [139609612, 139610050], [139613057, 139613208]]	[[139563662, 139564451], [139565731, 139565827], [139568953, 139569046], [139576700, 139576775], [139581454, 139581574], [139583715, 139583910], [139591592, 139591763], [139597966, 139598058], [139609612, 139610036]]

Promoter

Chrom	Start	End	Description
chr6	139592240	139592247	CAGE_peak_8_at_TXLNB_5end
chr6	139613079	139613086	CAGE_peak_5_at_TXLNB_5end
chr6	139613101	139613118	CAGE_peak_2_at_TXLNB_5end
chr6	139613125	139613190	CAGE_peak_1_at_TXLNB_5end
chr6	139613269	139613280	CAGE_peak_3_at_TXLNB_5end
chr6	139613293	139613302	CAGE_peak_4_at_TXLNB_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I139194	139194787	139195204	0.38	[{'connected_gene': 'ABRACL', 'score': 6.47}, {'connected_gene': 'ENSG00000231329', 'score': 0.26}, {'connected_gene': 'HECA', 'score': 0.22}, {'connected_gene': 'ENSG00000272446', 'score': 0.18}, {'connected_gene': 'TXLNB', 'score': 0.13}]
chr6	GH06I139175	139175444	139175741	0.74	[{'connected_gene': 'HECA', 'score': 12.12}, {'connected_gene': 'REPS1', 'score': 10.96}, {'connected_gene': 'ABRACL', 'score': 6.72}, {'connected_gene': 'ENSG00000231329', 'score': 0.21}, {'connected_gene': 'ENSG00000272446', 'score': 0.15}, {'connected_gene': 'TXLNB', 'score': 0.11}]
chr6	GH06I139172	139172146	139173741	0.63	[{'connected_gene': 'HECA', 'score': 17.69}, {'connected_gene': 'REPS1', 'score': 10.96}, {'connected_gene': 'ENSG00000231329', 'score': 0.2}, {'connected_gene': 'ENSG00000272446', 'score': 0.15}, {'connected_gene': 'TXLNB', 'score': 0.1}]
chr6	GH06I139171	139171065	139171835	0.4	[{'connected_gene': 'HECA', 'score': 12.14}, {'connected_gene': 'REPS1', 'score': 10.96}, {'connected_gene': 'ENSG00000231329', 'score': 0.2}, {'connected_gene': 'ENSG00000272446', 'score': 0.14}, {'connected_gene': 'TXLNB', 'score': 0.1}]
chr6	GH06I139131	139131601	139137542	2.4	[{'connected_gene': 'HECA', 'score': 556.68}, {'connected_gene': 'ABRACL', 'score': 6.65}, {'connected_gene': 'TXLNB', 'score': 4.78}, {'connected_gene': 'ECT2L', 'score': 4.33}, {'connected_gene': 'GC06P139052', 'score': 0.18}]
chr6	GH06I139146	139146827	139152401	1.26	[{'connected_gene': 'HECA', 'score': 6.14}, {'connected_gene': 'TXLNB', 'score': 4.79}, {'connected_gene': 'ECT2L', 'score': 4.33}, {'connected_gene': 'ENSG00000231329', 'score': 0.16}]
chr6	GH06I139230	139230268	139231273	1.03	[{'connected_gene': 'HECA', 'score': 10.61}, {'connected_gene': 'ENSG00000231329', 'score': 0.44}, {'connected_gene': 'ENSG00000272446', 'score': 0.25}, {'connected_gene': 'TXLNB', 'score': 0.16}]
chr6	GH06I139159	139159555	139163363	1.17	[{'connected_gene': 'HECA', 'score': 5.81}, {'connected_gene': 'ENSG00000231329', 'score': 0.18}, {'connected_gene': 'ENSG00000272446', 'score': 0.13}, {'connected_gene': 'TXLNB', 'score': 0.1}]
chr6	GH06I139164	139164124	139164273	0.4	[{'connected_gene': 'HECA', 'score': 5.05}, {'connected_gene': 'ENSG00000231329', 'score': 0.18}, {'connected_gene': 'ENSG00000272446', 'score': 0.14}, {'connected_gene': 'TXLNB', 'score': 0.1}]
chr6	GH06I139165	139165484	139165633	0.51	[{'connected_gene': 'HECA', 'score': 0.29}, {'connected_gene': 'ENSG00000231329', 'score': 0.19}, {'connected_gene': 'ENSG00000272446', 'score': 0.14}, {'connected_gene': 'TXLNB', 'score': 0.1}]
chr6	GH06I139168	139168311	139169240	0.2	[{'connected_gene': 'HECA', 'score': 11.08}, {'connected_gene': 'LOC102723690', 'score': 9.33}, {'connected_gene': 'ENSG00000231329', 'score': 0.19}, {'connected_gene': 'ENSG00000272446', 'score': 0.14}, {'connected_gene': 'TXLNB', 'score': 0.1}]
chr6	GH06I139253	139253339	139254891	0.2	[{'connected_gene': 'TXLNB', 'score': 9.91}, {'connected_gene': 'REPS1', 'score': 9.72}, {'connected_gene': 'LOC102723690', 'score': 0.77}, {'connected_gene': 'ENSG00000272446', 'score': 0.34}]
chr6	GH06I139257	139257268	139257610	0.45	[{'connected_gene': 'TXLNB', 'score': 9.44}, {'connected_gene': 'CCDC28A', 'score': 1.58}, {'connected_gene': 'LOC102723690', 'score': 0.44}, {'connected_gene': 'ENSG00000272446', 'score': 0.37}]
chr6	GH06I139322	139322727	139326132	1.4	[{'connected_gene': 'TXLNB', 'score': 550.77}, {'connected_gene': 'LOC102723690', 'score': 11.48}, {'connected_gene': 'LINC01625', 'score': 4.79}, {'connected_gene': 'HECA', 'score': 4.29}, {'connected_gene': 'ABRACL', 'score': 1.24}, {'connected_gene': 'LOC100129844', 'score': 0.39}]
chr6	GH06I139289	139289364	139294020	2.15	[{'connected_gene': 'TXLNB', 'score': 607.69}, {'connected_gene': 'LOC102723690', 'score': 11.78}, {'connected_gene': 'CITED2', 'score': 10.11}, {'connected_gene': 'HECA', 'score': 8.48}, {'connected_gene': 'REPS1', 'score': 2.15}, {'connected_gene': 'ABRACL', 'score': 1.58}, {'connected_gene': 'ENSG00000272446', 'score': 0.39}]
chr6	GH06I139262	139262061	139263847	1.02	[{'connected_gene': 'TXLNB', 'score': 11.43}, {'connected_gene': 'ENSG00000272446', 'score': 0.39}, {'connected_gene': 'LOC102723690', 'score': 0.39}]
chr6	GH06I139279	139279013	139280698	0.99	[{'connected_gene': 'TXLNB', 'score': 47.83}, {'connected_gene': 'ENSG00000272446', 'score': 0.77}, {'connected_gene': 'LOC102723690', 'score': 0.31}]
chr6	GH06I139285	139285419	139286879	0.31	[{'connected_gene': 'TXLNB', 'score': 48.57}, {'connected_gene': 'ENSG00000272446', 'score': 0.44}, {'connected_gene': 'LOC102723690', 'score': 0.28}]
chr6	GH06I139243	139243137	139245692	0.38	[{'connected_gene': 'TXLNB', 'score': 6.5}, {'connected_gene': 'ENSG00000231329', 'score': 0.77}, {'connected_gene': 'LOC102723690', 'score': 0.44}, {'connected_gene': 'ENSG00000272446', 'score': 0.29}]
chr6	GH06I139309	139308384	139308533	0.58	[{'connected_gene': 'TXLNB', 'score': 0.37}, {'connected_gene': 'ENSG00000272446', 'score': 0.29}]
chr6	GH06I139308	139308600	139309673	1.26	[{'connected_gene': 'TXLNB', 'score': 7.88}, {'connected_gene': 'ENSG00000272446', 'score': 0.29}]
chr6	GH06I139138	139138676	139140333	0.2	[{'connected_gene': 'LOC102723690', 'score': 9.82}, {'connected_gene': 'REPS1', 'score': 9.72}, {'connected_gene': 'HECA', 'score': 6.49}, {'connected_gene': 'TXLNB', 'score': 4.78}, {'connected_gene': 'ECT2L', 'score': 4.33}, {'connected_gene': 'ENSG00000231329', 'score': 0.15}]
chr6	GH06I139250	139250204	139252740	0.97	[{'connected_gene': 'LOC102723690', 'score': 550.77}, {'connected_gene': 'REPS1', 'score': 9.72}, {'connected_gene': 'TXLNB', 'score': 9.44}, {'connected_gene': 'ENSG00000272446', 'score': 0.31}]
chr6	GH06I139185	139185237	139187345	0.31	[{'connected_gene': 'LOC102723690', 'score': 9.56}, {'connected_gene': 'ABRACL', 'score': 6.19}, {'connected_gene': 'HECA', 'score': 5.29}, {'connected_gene': 'TXLNB', 'score': 4.75}, {'connected_gene': 'ENSG00000231329', 'score': 0.23}, {'connected_gene': 'ENSG00000272446', 'score': 0.16}]
chr6	GH06I139183	139183194	139185100	0.31	[{'connected_gene': 'LOC102723690', 'score': 9.55}, {'connected_gene': 'HECA', 'score': 5.9}, {'connected_gene': 'ENSG00000231329', 'score': 0.22}, {'connected_gene': 'ENSG00000272446', 'score': 0.16}, {'connected_gene': 'TXLNB', 'score': 0.12}]
chr6	GH06I139312	139312427	139315193	0.66	[{'connected_gene': 'LOC102723690', 'score': 10.75}, {'connected_gene': 'TXLNB', 'score': 6.67}, {'connected_gene': 'ENSG00000272446', 'score': 0.28}]
chr6	GH06I139321	139321364	139321612	0.22	[{'connected_gene': 'LOC102723690', 'score': 11.41}, {'connected_gene': 'TXLNB', 'score': 2.11}, {'connected_gene': 'ENSG00000272446', 'score': 0.26}]
chr6	GH06I139303	139303863	139303877	0.22	[{'connected_gene': 'LOC102723690', 'score': 10.23}, {'connected_gene': 'TXLNB', 'score': 0.34}, {'connected_gene': 'ENSG00000272446', 'score': 0.31}]
chr6	GH06I139296	139296601	139297213	0.71	[{'connected_gene': 'LOC102723690', 'score': 11.43}, {'connected_gene': 'TXLNB', 'score': 8.61}, {'connected_gene': 'ENSG00000272446', 'score': 0.37}]
chr6	GH06I139255	139255910	139256333	0.62	[{'connected_gene': 'LOC102723690', 'score': 0.44}, {'connected_gene': 'ENSG00000272446', 'score': 0.34}, {'connected_gene': 'TXLNB', 'score': 0.2}]
chr6	GH06I139297	139296064	139296213	0.66	[{'connected_gene': 'LOC102723690', 'score': 11.23}, {'connected_gene': 'ENSG00000272446', 'score': 0.37}, {'connected_gene': 'TXLNB', 'score': 0.31}]
chr6	GH06I139315	139315938	139317583	0.31	[{'connected_gene': 'LOC102723690', 'score': 10.25}, {'connected_gene': 'TXLNB', 'score': 0.44}, {'connected_gene': 'ENSG00000272446', 'score': 0.28}]
chr6	GH06I139256	139256710	139256863	0.4	[{'connected_gene': 'LOC102723690', 'score': 0.44}, {'connected_gene': 'ENSG00000272446', 'score': 0.34}, {'connected_gene': 'TXLNB', 'score': 0.2}]
chr6	GH06I139334	139334247	139339750	1.43	[{'connected_gene': 'LOC100129844', 'score': 559.2}, {'connected_gene': 'LOC102723690', 'score': 11.23}, {'connected_gene': 'HECA', 'score': 3.41}, {'connected_gene': 'TXLNB', 'score': 0.39}]
chr6	GH06I139218	139218778	139220657	1.3	[{'connected_gene': 'ENSG00000231329', 'score': 0.37}, {'connected_gene': 'ENSG00000272446', 'score': 0.22}, {'connected_gene': 'HECA', 'score': 0.18}, {'connected_gene': 'TXLNB', 'score': 0.15}]
chr6	GH06I139238	139238798	139239933	0.2	[{'connected_gene': 'ENSG00000231329', 'score': 550.77}, {'connected_gene': 'ENSG00000272446', 'score': 0.28}, {'connected_gene': 'TXLNB', 'score': 0.18}, {'connected_gene': 'HECA', 'score': 0.15}]
chr6	GH06I139277	139277299	139278718	0.78	[{'connected_gene': 'ENSG00000272446', 'score': 550.77}, {'connected_gene': 'TXLNB', 'score': 27.39}, {'connected_gene': 'LOC102723690', 'score': 0.31}]
chr6	GH06I139240	139240204	139241705	0.94	[{'connected_gene': 'ENSG00000231329', 'score': 550.77}, {'connected_gene': 'TXLNB', 'score': 6.48}, {'connected_gene': 'LOC102723690', 'score': 0.44}, {'connected_gene': 'ENSG00000272446', 'score': 0.28}]
chr6	GH06I139239	139239984	139239992	0.2	[{'connected_gene': 'ENSG00000231329', 'score': 550.77}, {'connected_gene': 'LOC102723690', 'score': 0.39}, {'connected_gene': 'ENSG00000272446', 'score': 0.28}, {'connected_gene': 'TXLNB', 'score': 0.18}]
chr6	GH06I139270	139270924	139271600	0.94	[{'connected_gene': 'ENSG00000272446', 'score': 0.44}, {'connected_gene': 'LOC102723690', 'score': 0.34}, {'connected_gene': 'TXLNB', 'score': 0.23}]
chr6	GH06I139271	139271801	139272000	0.51	[{'connected_gene': 'ENSG00000272446', 'score': 0.44}, {'connected_gene': 'LOC102723690', 'score': 0.34}, {'connected_gene': 'TXLNB', 'score': 0.23}]
chr6	GH06I139276	139276491	139277139	0.51	[{'connected_gene': 'ENSG00000272446', 'score': 550.77}, {'connected_gene': 'LOC102723690', 'score': 0.31}, {'connected_gene': 'TXLNB', 'score': 0.25}]