PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000331715	[[127539436, 127539639], [127549253, 127549517], [127561563, 127561770], [127563692, 127563942], [127566372, 127566515]]	[[127539549, 127539639], [127549253, 127549517], [127561563, 127561770], [127563692, 127563942], [127566372, 127566515]]
ENST00000373580	[[127539549, 127539639], [127549253, 127549517], [127557302, 127557410], [127561563, 127561770], [127563692, 127563942], [127566372, 127566621], [127570059, 127570245], [127572086, 127577157]]	[[127539549, 127539639], [127549253, 127549517], [127557302, 127557410], [127561563, 127561770], [127563692, 127563942], [127566372, 127566621], [127570059, 127570245], [127572086, 127572691]]
ENST00000288815	[[127563152, 127563353], [127563692, 127563942], [127566372, 127566621], [127570059, 127570245], [127572086, 127577164]]	[[127563326, 127563353], [127563692, 127563942], [127566372, 127566621], [127570059, 127570245], [127572086, 127572691]]
NM_182487	[[127539436, 127539639], [127549253, 127549517], [127557302, 127557410], [127561563, 127561770], [127563692, 127563942], [127566372, 127566621], [127570059, 127570245], [127572086, 127577170]]	[[127539549, 127539639], [127549253, 127549517], [127557302, 127557410], [127561563, 127561770], [127563692, 127563942], [127566372, 127566621], [127570059, 127570245], [127572086, 127572691]]
NM_001282715	[[127563152, 127563353], [127563692, 127563942], [127566372, 127566621], [127570059, 127570245], [127572086, 127577170]]	[[127563326, 127563353], [127563692, 127563942], [127566372, 127566621], [127570059, 127570245], [127572086, 127572691]]

Promoter

Chrom	Start	End	Description
chr9	127539377	127539423	CAGE_peak_1_at_OLFML2A_5end
chr9	127539425	127539448	CAGE_peak_2_at_OLFML2A_5end
chr9	127539451	127539471	CAGE_peak_3_at_OLFML2A_5end
chr9	127539481	127539493	CAGE_peak_4_at_OLFML2A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I124880	124880928	124881759	0.31	[{'connected_gene': 'ARPC5L', 'score': 13.02}, {'connected_gene': 'WDR38', 'score': 12.15}, {'connected_gene': 'OLFML2A', 'score': 11.68}, {'connected_gene': 'GOLGA1', 'score': 10.51}, {'connected_gene': 'PPP6C', 'score': 4.35}, {'connected_gene': 'RNU4-82P', 'score': 0.44}, {'connected_gene': 'GC09M124888', 'score': 0.44}]
chr9	GH09I124831	124831464	124833362	1.29	[{'connected_gene': 'ARPC5L', 'score': 8.94}, {'connected_gene': 'OLFML2A', 'score': 5.28}, {'connected_gene': 'PIR55692', 'score': 0.34}, {'connected_gene': 'WDR38', 'score': 0.34}]
chr9	GH09I124834	124834077	124836335	1.22	[{'connected_gene': 'ARPC5L', 'score': 8.05}, {'connected_gene': 'OLFML2A', 'score': 6.49}, {'connected_gene': 'WDR38', 'score': 0.37}, {'connected_gene': 'PIR55692', 'score': 0.34}]
chr9	GH09I124839	124839371	124841933	1.03	[{'connected_gene': 'ARPC5L', 'score': 23.88}, {'connected_gene': 'RPL35', 'score': 12.8}, {'connected_gene': 'GOLGA1', 'score': 7.42}, {'connected_gene': 'OLFML2A', 'score': 5.07}, {'connected_gene': 'WDR38', 'score': 0.39}, {'connected_gene': 'PIR55692', 'score': 0.29}]
chr9	GH09I124851	124851700	124854167	2.19	[{'connected_gene': 'WDR38', 'score': 550.77}, {'connected_gene': 'ARPC5L', 'score': 14.47}, {'connected_gene': 'OLFML2A', 'score': 4.22}, {'connected_gene': 'PIR55692', 'score': 0.26}]
chr9	GH09I124795	124795022	124798471	1.24	[{'connected_gene': 'WDR38', 'score': 12.09}, {'connected_gene': 'ARPC5L', 'score': 12.07}, {'connected_gene': 'RPL35', 'score': 12.07}, {'connected_gene': 'GAPVD1', 'score': 10.18}, {'connected_gene': 'RNU6-1020P', 'score': 10.16}, {'connected_gene': 'MIR181A2HG', 'score': 8.44}, {'connected_gene': 'PIR55692', 'score': 0.39}, {'connected_gene': 'OLFML2A', 'score': 0.37}]
chr9	GH09I124774	124774324	124775000	1.05	[{'connected_gene': 'WDR38', 'score': 13.58}, {'connected_gene': 'ARPC5L', 'score': 13.57}, {'connected_gene': 'RPL35', 'score': 13.57}, {'connected_gene': 'MIR181A2HG', 'score': 8.32}, {'connected_gene': 'OLFML2A', 'score': 0.77}, {'connected_gene': 'NR6A1', 'score': 0.77}]
chr9	GH09I124881	124880413	124880823	0.51	[{'connected_gene': 'WDR38', 'score': 12.15}, {'connected_gene': 'OLFML2A', 'score': 11.68}, {'connected_gene': 'GOLGA1', 'score': 10.38}, {'connected_gene': 'RNU4-82P', 'score': 0.44}, {'connected_gene': 'GC09M124888', 'score': 0.44}, {'connected_gene': 'ARPC5L', 'score': 0.37}]
chr9	GH09I125095	125095040	125095835	0.38	[{'connected_gene': 'SCAI', 'score': 16.15}, {'connected_gene': 'RABEPK', 'score': 15.89}, {'connected_gene': 'OLFML2A', 'score': 4.42}, {'connected_gene': 'GC09P125105', 'score': 0.44}, {'connected_gene': 'GC09M125042', 'score': 0.23}]
chr9	GH09I124510	124510517	124513933	1.18	[{'connected_gene': 'GOLGA1', 'score': 12.22}, {'connected_gene': 'OLFML2A', 'score': 11.41}, {'connected_gene': 'GAPVD1', 'score': 10.75}, {'connected_gene': 'NR5A1', 'score': 0.77}, {'connected_gene': 'ENSG00000231149', 'score': 0.77}]
chr9	GH09I124772	124772582	124772631	0.38	[{'connected_gene': 'NR6A1', 'score': 550.77}, {'connected_gene': 'WDR38', 'score': 13.58}, {'connected_gene': 'ARPC5L', 'score': 13.57}, {'connected_gene': 'RPL35', 'score': 13.57}, {'connected_gene': 'OLFML2A', 'score': 0.77}, {'connected_gene': 'ENSG00000236643', 'score': 0.77}]
chr9	GH09I125238	125238117	125244755	2.29	[{'connected_gene': 'GAPVD1', 'score': 589.95}, {'connected_gene': 'HSPA5', 'score': 550.77}, {'connected_gene': 'GC09M125241', 'score': 550.77}, {'connected_gene': 'ENSG00000239705', 'score': 550.77}, {'connected_gene': 'GOLGA1', 'score': 22.95}, {'connected_gene': 'PRPS1P2', 'score': 22.57}, {'connected_gene': 'RABEPK', 'score': 14.15}, {'connected_gene': 'RPL35', 'score': 9.67}, {'connected_gene': 'OLFML2A', 'score': 4.32}]
chr9	GH09I124499	124499745	124502291	0.68	[{'connected_gene': 'GAPVD1', 'score': 20.19}, {'connected_gene': 'GOLGA1', 'score': 12.23}, {'connected_gene': 'OLFML2A', 'score': 11.4}, {'connected_gene': 'NR5A1', 'score': 0.44}, {'connected_gene': 'LOC105376270', 'score': 0.25}]
chr9	GH09I124799	124799642	124802984	1.49	[{'connected_gene': 'OLFML2A', 'score': 561.52}, {'connected_gene': 'WDR38', 'score': 12.1}, {'connected_gene': 'ARPC5L', 'score': 12.08}, {'connected_gene': 'RPL35', 'score': 12.08}, {'connected_gene': 'GAPVD1', 'score': 10.18}, {'connected_gene': 'RNU6-1020P', 'score': 10.16}, {'connected_gene': 'MIR181A2HG', 'score': 7.47}, {'connected_gene': 'PIR55692', 'score': 0.44}]
chr9	GH09I124819	124819922	124822095	1	[{'connected_gene': 'OLFML2A', 'score': 5.27}, {'connected_gene': 'PIR55692', 'score': 0.39}, {'connected_gene': 'WDR38', 'score': 0.29}]
chr9	GH09I124776	124776902	124781071	2.25	[{'connected_gene': 'OLFML2A', 'score': 550.77}, {'connected_gene': 'SCAI', 'score': 4.28}, {'connected_gene': 'GOLGA1', 'score': 4.08}, {'connected_gene': 'PIR55692', 'score': 0.29}]
chr9	GH09I124804	124804699	124806117	0.51	[{'connected_gene': 'OLFML2A', 'score': 7.78}, {'connected_gene': 'PIR55692', 'score': 0.77}]
chr9	GH09I124782	124782643	124783230	0.69	[{'connected_gene': 'OLFML2A', 'score': 0.44}, {'connected_gene': 'PIR55692', 'score': 0.31}]
chr9	GH09I124803	124803416	124803903	0.2	[{'connected_gene': 'OLFML2A', 'score': 10.99}, {'connected_gene': 'PIR55692', 'score': 0.44}]
chr9	GH09I124790	124790417	124791469	0.31	[{'connected_gene': 'OLFML2A', 'score': 0.39}, {'connected_gene': 'PIR55692', 'score': 0.37}]
chr9	GH09I125537	125537044	125538987	1.29	[{'connected_gene': 'LOC102723468', 'score': 550.77}, {'connected_gene': 'OLFML2A', 'score': 4.82}, {'connected_gene': 'LOC105376272', 'score': 0.31}, {'connected_gene': 'MAPKAP1', 'score': 0.1}]
chr9	GH09I125407	125407601	125411372	1.49	[{'connected_gene': 'LOC101929014', 'score': 550.77}, {'connected_gene': 'GAPVD1', 'score': 43.64}, {'connected_gene': 'GOLGA1', 'score': 40.96}, {'connected_gene': 'PRPS1P2', 'score': 34.39}, {'connected_gene': 'LOC101929116', 'score': 11.68}, {'connected_gene': 'OLFML2A', 'score': 11.37}, {'connected_gene': 'PPP6C', 'score': 5.26}, {'connected_gene': 'PBX3', 'score': 4.44}, {'connected_gene': 'GC09P125397', 'score': 0.39}]
chr9	GH09I124488	124488034	124490960	0.56	[{'connected_gene': 'MIR181A2HG', 'score': 5.65}, {'connected_gene': 'OLFML2A', 'score': 5.55}, {'connected_gene': 'NR5A1', 'score': 0.37}, {'connected_gene': 'LOC105376270', 'score': 0.28}]
chr9	GH09I124783	124783797	124784946	0.76	[{'connected_gene': 'MIR181A2HG', 'score': 6.69}, {'connected_gene': 'OLFML2A', 'score': 0.44}, {'connected_gene': 'PIR55692', 'score': 0.31}]
chr9	GH09I124791	124791936	124794582	0.99	[{'connected_gene': 'MIR181A2HG', 'score': 8.92}, {'connected_gene': 'PIR55692', 'score': 0.37}, {'connected_gene': 'OLFML2A', 'score': 0.37}]
chr9	GH09I124808	124808482	124814575	1.29	[{'connected_gene': 'PIR55692', 'score': 550.77}, {'connected_gene': 'GOLGA1', 'score': 17.45}, {'connected_gene': 'OLFML2A', 'score': 5.47}, {'connected_gene': 'WDR38', 'score': 0.26}]
chr9	GH09I124574	124574292	124575753	0.82	[{'connected_gene': 'ENSG00000231149', 'score': 11.2}, {'connected_gene': 'NR5A1', 'score': 11.18}, {'connected_gene': 'MIR181A2HG', 'score': 8.23}, {'connected_gene': 'OLFML2A', 'score': 4.22}, {'connected_gene': 'LOC100419284', 'score': 0.34}, {'connected_gene': 'PIR56415', 'score': 0.22}, {'connected_gene': 'NR6A1', 'score': 0.08}]