PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000540085	[[7882010, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7899913, 7900074], [7901708, 7902069]]	[[7882191, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7899913, 7899944]]
ENST00000542353	[[7882010, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7898926, 7899019], [7899913, 7900074], [7901708, 7902069]]	[[7882191, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7898926, 7899019], [7899913, 7899944]]
ENST00000354629	[[7882010, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7899913, 7900077], [7901708, 7901795], [7904025, 7904201]]	[[7882191, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7899913, 7899944]]
ENST00000360345	[[7882037, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7898926, 7899019], [7899913, 7900118]]	[[7882191, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7898926, 7899019], [7899913, 7899944]]
ENST00000537530	[[7882038, 7882336], [7883376, 7883508], [7890024, 7890171]]	[[7883388, 7883508], [7890024, 7890171]]
ENST00000543765	[[7882299, 7882336], [7883392, 7883508], [7890024, 7890170], [7898926, 7899019], [7899913, 7899935]]	[[7882299, 7882336], [7883392, 7883508], [7890024, 7890170], [7898926, 7899019], [7899913, 7899935]]
NM_130441	[[7882010, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7898926, 7899019], [7899913, 7900074], [7901708, 7902069]]	[[7882191, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7898926, 7899019], [7899913, 7899944]]
NM_203503	[[7882010, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7899913, 7900074], [7901708, 7902069]]	[[7882191, 7882336], [7883392, 7883508], [7890024, 7890170], [7894016, 7894127], [7899913, 7899944]]

Promoter

Chrom	Start	End	Description
chr12	7899944	7899955	CAGE_peak_3_at_CLEC4C_5end
chr12	7899958	7899984	CAGE_peak_1_at_CLEC4C_5end
chr12	7902131	7902142	CAGE_peak_4_at_CLEC4C_5end
chr12	7904213	7904218	CAGE_peak_2_at_CLEC4C_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I007757	7757816	7759307	0.51	[{'connected_gene': 'CLEC4C', 'score': 9.81}, {'connected_gene': 'NANOGNB', 'score': 0.44}]
chr12	GH12I007749	7749531	7749590	0.5	[{'connected_gene': 'CLEC4C', 'score': 550.77}, {'connected_gene': 'ENSG00000201549', 'score': 12.34}, {'connected_gene': 'DPPA3', 'score': 12.19}, {'connected_gene': 'NECAP1', 'score': 12.1}, {'connected_gene': 'GC12M007725', 'score': 0.34}]
chr12	GH12I007747	7747364	7747423	0.5	[{'connected_gene': 'CLEC4C', 'score': 550.77}, {'connected_gene': 'ENSG00000201549', 'score': 13.32}, {'connected_gene': 'NECAP1', 'score': 13.1}, {'connected_gene': 'GDF3', 'score': 11.59}, {'connected_gene': 'DPPA3', 'score': 11.56}, {'connected_gene': 'GC12M007725', 'score': 0.34}]