PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000406936	[[76099349, 76100775], [76104249, 76104402], [76111799, 76111811], [76111899, 76111991]]	[[76100724, 76100775], [76104249, 76104402], [76111799, 76111811], [76111899, 76111941]]
ENST00000377615	[[76099354, 76100775], [76104249, 76104402], [76111799, 76111811], [76111899, 76112056], [76112888, 76112938]]	[[76100724, 76100775], [76104249, 76104402], [76111799, 76111811], [76111899, 76111941]]
ENST00000483290	[[76100571, 76100775], [76104249, 76104640]]	None
ENST00000377619	[[76100571, 76100775], [76104249, 76104402], [76111517, 76111754]]	[[76100724, 76100775], [76104249, 76104402], [76111517, 76111616]]
ENST00000486516	[[76100571, 76100775], [76104446, 76104541], [76111799, 76111811], [76111899, 76111962]]	None
ENST00000355801	[[76100571, 76100775], [76101948, 76101987], [76104249, 76104402], [76111799, 76111811], [76111899, 76111977]]	[[76100724, 76100775], [76101948, 76101987], [76104249, 76104402], [76111799, 76111811], [76111899, 76111941]]
ENST00000497707	[[76100571, 76100775], [76104446, 76104544], [76111799, 76111811], [76111899, 76111977]]	None
ENST00000377612	[[76100571, 76100775], [76104249, 76104395], [76111876, 76112056], [76112888, 76112938]]	[[76104340, 76104395], [76111876, 76111941]]
ENST00000460675	[[76100571, 76100775], [76104249, 76104402], [76123458, 76123564]]	None
ENST00000464050	[[76103844, 76104541], [76111799, 76111811], [76111899, 76111980]]	None
ENST00000477377	[[76103959, 76104402], [76111799, 76111811], [76111899, 76111977]]	None
ENST00000471682	[[76104249, 76104402], [76111634, 76111811], [76123458, 76123575]]	None
NM_203497	[[76099349, 76100775], [76101948, 76101987], [76104249, 76104402], [76111799, 76111811], [76111899, 76112008]]	[[76100724, 76100775], [76101948, 76101987], [76104249, 76104402], [76111799, 76111811], [76111899, 76111941]]
NM_001287392	[[76099354, 76100775], [76104249, 76104402], [76111619, 76111811], [76111899, 76112008]]	[[76100724, 76100775], [76104249, 76104375]]
NM_001287393	[[76099354, 76100775], [76104249, 76104402], [76111634, 76111811], [76111899, 76112008]]	[[76100724, 76100775], [76104249, 76104375]]
NM_203495	[[76099354, 76100775], [76104249, 76104402], [76111799, 76111811], [76111899, 76112008]]	[[76100724, 76100775], [76104249, 76104402], [76111799, 76111811], [76111899, 76111941]]
NM_001287394	[[76099354, 76100775], [76104249, 76104402], [76123458, 76123575]]	[[76100724, 76100775], [76104249, 76104375]]

Promoter

Chrom	Start	End	Description
chr13	76111945	76111991	CAGE_peak_1_at_COMMD6_5end
chr13	76123558	76123583	CAGE_peak_2_at_COMMD6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I075373	75373023	75373883	0.82	[{'connected_gene': 'TBC1D4', 'score': 16.79}, {'connected_gene': 'UCHL3', 'score': 11.8}, {'connected_gene': 'COMMD6', 'score': 11.8}, {'connected_gene': 'ENSG00000225203', 'score': 0.77}, {'connected_gene': 'LINC01078', 'score': 0.13}]
chr13	GH13I075372	75372401	75372800	0.83	[{'connected_gene': 'TBC1D4', 'score': 17.27}, {'connected_gene': 'UCHL3', 'score': 11.8}, {'connected_gene': 'COMMD6', 'score': 11.8}, {'connected_gene': 'ENSG00000225203', 'score': 0.77}, {'connected_gene': 'LINC01078', 'score': 0.13}]
chr13	GH13I075480	75479258	75483290	2.27	[{'connected_gene': 'TBC1D4', 'score': 555.62}, {'connected_gene': 'COMMD6', 'score': 27.26}, {'connected_gene': 'UCHL3', 'score': 12.1}, {'connected_gene': 'ENSG00000228444', 'score': 10.13}, {'connected_gene': 'LMO7-AS1', 'score': 5.35}, {'connected_gene': 'ENSG00000225203', 'score': 0.15}]
chr13	GH13I075491	75491785	75493756	0.68	[{'connected_gene': 'UCHL3', 'score': 12.4}, {'connected_gene': 'COMMD6', 'score': 12.4}, {'connected_gene': 'ENSG00000225203', 'score': 10.98}, {'connected_gene': 'TBC1D4', 'score': 0.39}, {'connected_gene': 'PIR51840', 'score': 0.31}]
chr13	GH13I075476	75476775	75477201	0.2	[{'connected_gene': 'UCHL3', 'score': 12.06}, {'connected_gene': 'COMMD6', 'score': 12.06}, {'connected_gene': 'ENSG00000225203', 'score': 11.1}, {'connected_gene': 'TBC1D4', 'score': 5.32}]
chr13	GH13I075504	75504974	75505915	0.54	[{'connected_gene': 'UCHL3', 'score': 13.02}, {'connected_gene': 'COMMD6', 'score': 13.02}, {'connected_gene': 'TBC1D4', 'score': 4.77}, {'connected_gene': 'PIR51840', 'score': 0.37}]
chr13	GH13I075485	75485124	75486514	0.65	[{'connected_gene': 'UCHL3', 'score': 12.1}, {'connected_gene': 'COMMD6', 'score': 12.1}, {'connected_gene': 'LMO7-AS1', 'score': 5.08}, {'connected_gene': 'TBC1D4', 'score': 5.04}, {'connected_gene': 'PIR51840', 'score': 0.28}]
chr13	GH13I075544	75544808	75545569	0.62	[{'connected_gene': 'UCHL3', 'score': 12.74}, {'connected_gene': 'COMMD6', 'score': 8.81}, {'connected_gene': 'GC13M075537', 'score': 0.77}]
chr13	GH13I075758	75758892	75764654	2.66	[{'connected_gene': 'LMO7', 'score': 558.24}, {'connected_gene': 'LMO7DN', 'score': 16.85}, {'connected_gene': 'LMO7-AS1', 'score': 7.67}, {'connected_gene': 'COMMD6', 'score': 1.15}, {'connected_gene': 'GC13M075699', 'score': 0.23}, {'connected_gene': 'GC13M075860', 'score': 0.15}, {'connected_gene': 'ENSG00000261553', 'score': 0.08}]
chr13	GH13I075712	75712017	75715061	0.31	[{'connected_gene': 'LMO7', 'score': 4.53}, {'connected_gene': 'COMMD6', 'score': 4.46}, {'connected_gene': 'GC13M075699', 'score': 0.44}, {'connected_gene': 'GC13M075860', 'score': 0.11}, {'connected_gene': 'ENSG00000261553', 'score': 0.1}]
chr13	GH13I075512	75512195	75512767	0.56	[{'connected_gene': 'COMMD6', 'score': 7.55}, {'connected_gene': 'PIR51840', 'score': 0.44}, {'connected_gene': 'TBC1D4', 'score': 0.31}]
chr13	GH13I075477	75477801	75478200	0.4	[{'connected_gene': 'COMMD6', 'score': 6.51}, {'connected_gene': 'TBC1D4', 'score': 5.2}, {'connected_gene': 'ENSG00000225203', 'score': 0.15}]
chr13	GH13I075506	75506201	75506407	0.37	[{'connected_gene': 'COMMD6', 'score': 18.98}, {'connected_gene': 'UCHL3', 'score': 13.02}, {'connected_gene': 'PIR51840', 'score': 0.39}, {'connected_gene': 'TBC1D4', 'score': 0.34}]
chr13	GH13I075489	75489401	75490400	1.03	[{'connected_gene': 'COMMD6', 'score': 19.41}, {'connected_gene': 'UCHL3', 'score': 12.4}, {'connected_gene': 'TBC1D4', 'score': 0.44}, {'connected_gene': 'PIR51840', 'score': 0.29}]
chr13	GH13I075495	75495642	75496674	0.2	[{'connected_gene': 'COMMD6', 'score': 18.78}, {'connected_gene': 'UCHL3', 'score': 11.76}, {'connected_gene': 'ENSG00000225203', 'score': 10.98}, {'connected_gene': 'TBC1D4', 'score': 4.96}, {'connected_gene': 'PIR51840', 'score': 0.31}]
chr13	GH13I075537	75537000	75538774	2.01	[{'connected_gene': 'COMMD6', 'score': 558.03}, {'connected_gene': 'UCHL3', 'score': 10.3}, {'connected_gene': 'LMO7-AS1', 'score': 8.66}, {'connected_gene': 'GC13M075537', 'score': 0.77}, {'connected_gene': 'GC13P075531', 'score': 0.44}]
chr13	GH13I075548	75548739	75551005	2.04	[{'connected_gene': 'COMMD6', 'score': 571.47}, {'connected_gene': 'UCHL3', 'score': 563.05}, {'connected_gene': 'ENSG00000261553', 'score': 550.77}, {'connected_gene': 'LMO7-AS1', 'score': 7.97}, {'connected_gene': 'GC13M075563', 'score': 0.39}]
chr13	GH13I074769	74769370	74773304	0.69	[{'connected_gene': 'COMMD6', 'score': 4.93}, {'connected_gene': 'LOC105370260', 'score': 0.28}, {'connected_gene': 'RIOK3P1', 'score': 0.22}]
chr13	GH13I075634	75634965	75638008	1.62	[{'connected_gene': 'LMO7-AS1', 'score': 608.02}, {'connected_gene': 'UCHL3', 'score': 10.67}, {'connected_gene': 'COMMD6', 'score': 10.67}, {'connected_gene': 'GC13P075644', 'score': 0.44}, {'connected_gene': 'LMO7', 'score': 0.37}, {'connected_gene': 'ENSG00000261553', 'score': 0.17}]
chr13	GH13I075632	75632587	75634490	1.03	[{'connected_gene': 'LMO7-AS1', 'score': 66.4}, {'connected_gene': 'UCHL3', 'score': 10.68}, {'connected_gene': 'COMMD6', 'score': 10.68}, {'connected_gene': 'ENSG00000228444', 'score': 0.77}, {'connected_gene': 'LMO7', 'score': 0.39}, {'connected_gene': 'ENSG00000261553', 'score': 0.18}]
chr13	GH13I075541	75541345	75541554	0.43	[{'connected_gene': 'GC13M075537', 'score': 550.77}, {'connected_gene': 'UCHL3', 'score': 0.44}, {'connected_gene': 'COMMD6', 'score': 0.44}, {'connected_gene': 'GC13P075531', 'score': 0.39}]
chr13	GH13I075405	75405650	75407162	0.87	[{'connected_gene': 'ENSG00000225203', 'score': 11.65}, {'connected_gene': 'COMMD6', 'score': 4.93}, {'connected_gene': 'LMO7-AS1', 'score': 4.87}, {'connected_gene': 'TBC1D4', 'score': 0.18}]