PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000337938	[[57875481, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897472], [57899385, 57901047]]	[[57875867, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897472], [57899385, 57899514]]
ENST00000311585	[[57875497, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897507], [57899385, 57901047]]	[[57875867, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897507], [57899385, 57899422]]
ENST00000371028	[[57875498, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897472], [57899385, 57899529], [57899750, 57901046]]	[[57875867, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897472], [57899385, 57899514]]
ENST00000371025	[[57875672, 57875919], [57876464, 57876777], [57896071, 57896248], [57899385, 57899801]]	[[57875867, 57875919], [57876464, 57876777], [57896071, 57896248], [57899385, 57899422]]
ENST00000395654	[[57875757, 57875919], [57876464, 57876777], [57896071, 57896248], [57899381, 57901047]]	[[57875867, 57875919], [57876464, 57876777], [57896071, 57896248], [57899381, 57899514]]
NM_001302456	[[57875481, 57875919], [57876464, 57876777], [57896071, 57896248], [57899385, 57901047]]	[[57875867, 57875919], [57876464, 57876777], [57896071, 57896248], [57899385, 57899422]]
NM_207033	[[57875481, 57875919], [57876464, 57876777], [57896071, 57896248], [57899381, 57901047]]	[[57875867, 57875919], [57876464, 57876777], [57896071, 57896248], [57899381, 57899514]]
NM_207034	[[57875481, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897472], [57899385, 57901047]]	[[57875867, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897472], [57899385, 57899514]]
NM_001302455	[[57875481, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897472], [57899381, 57901047]]	[[57875867, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897472], [57899381, 57899390]]
NM_207032	[[57875481, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897507], [57899385, 57901047]]	[[57875867, 57875919], [57876464, 57876777], [57896071, 57896248], [57897426, 57897507], [57899385, 57899422]]

Promoter

Chrom	Start	End	Description
chr20	57875267	57875287	CAGE_peak_4_at_EDN3_5end
chr20	57875457	57875496	CAGE_peak_2_at_EDN3_5end
chr20	57875506	57875525	CAGE_peak_5_at_EDN3_5end
chr20	57875548	57875554	CAGE_peak_9_at_EDN3_5end
chr20	57875631	57875638	CAGE_peak_6_at_EDN3_5end
chr20	57875644	57875657	CAGE_peak_3_at_EDN3_5end
chr20	57875658	57875673	CAGE_peak_1_at_EDN3_5end
chr20	57875797	57875806	CAGE_peak_8_at_EDN3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I059451	59451256	59454880	0.43	[{'connected_gene': 'EDN3', 'score': 10.49}, {'connected_gene': 'CTSZ', 'score': 4.83}, {'connected_gene': 'PIEZO1P1', 'score': 0.44}, {'connected_gene': 'ENSG00000230352', 'score': 0.17}]
chr20	GH20I059252	59252984	59254638	0.89	[{'connected_gene': 'EDN3', 'score': 10.34}, {'connected_gene': 'GNAS-AS1', 'score': 9.86}, {'connected_gene': 'GNAS', 'score': 9.86}, {'connected_gene': 'ZNF831', 'score': 0.12}]
chr20	GH20I059385	59385186	59386295	0.43	[{'connected_gene': 'EDN3', 'score': 10.77}, {'connected_gene': 'ENSG00000230352', 'score': 0.34}, {'connected_gene': 'PIEZO1P1', 'score': 0.18}]
chr20	GH20I059400	59400849	59400971	0.33	[{'connected_gene': 'EDN3', 'score': 4.93}, {'connected_gene': 'ENSG00000230352', 'score': 0.28}, {'connected_gene': 'PIEZO1P1', 'score': 0.22}]
chr20	GH20I059268	59268754	59269292	0.38	[{'connected_gene': 'EDN3', 'score': 11.26}, {'connected_gene': 'ZNF831', 'score': 0.11}]
chr20	GH20I059194	59194502	59196326	0.2	[{'connected_gene': 'EDN3', 'score': 5.41}, {'connected_gene': 'ZNF831', 'score': 0.19}]
chr20	GH20I059221	59221801	59223255	0.97	[{'connected_gene': 'EDN3', 'score': 0.18}, {'connected_gene': 'ZNF831', 'score': 0.15}]
chr20	GH20I059299	59299623	59300859	1.04	[{'connected_gene': 'EDN3', 'score': 550.77}, {'connected_gene': 'ZNF831', 'score': 0.1}]
chr20	GH20I059320	59320316	59321653	0.43	[{'connected_gene': 'EDN3', 'score': 12.04}, {'connected_gene': 'ENSG00000225129', 'score': 0.28}]
chr20	GH20I059333	59333566	59335768	0.54	[{'connected_gene': 'EDN3', 'score': 11.53}, {'connected_gene': 'ENSG00000225129', 'score': 0.34}]
chr20	GH20I059314	59314029	59319281	0.64	[{'connected_gene': 'EDN3', 'score': 0.37}, {'connected_gene': 'ENSG00000225129', 'score': 0.26}]
chr20	GH20I059308	59308041	59309934	0.52	[{'connected_gene': 'EDN3', 'score': 0.44}, {'connected_gene': 'ENSG00000225129', 'score': 0.25}]
chr20	GH20I059144	59144338	59145293	0.63	[{'connected_gene': 'ZNF831', 'score': 12.01}, {'connected_gene': 'NELFCD', 'score': 10.83}, {'connected_gene': 'EDN3', 'score': 0.1}]
chr20	GH20I059176	59176821	59180362	0.79	[{'connected_gene': 'ZNF831', 'score': 5.73}, {'connected_gene': 'TUBB1', 'score': 1.36}, {'connected_gene': 'EDN3', 'score': 0.13}]
chr20	GH20I059158	59158827	59168054	1.35	[{'connected_gene': 'ZNF831', 'score': 17.78}, {'connected_gene': 'TUBB1', 'score': 1.63}, {'connected_gene': 'EDN3', 'score': 0.12}]
chr20	GH20I059191	59191067	59191126	0.5	[{'connected_gene': 'ZNF831', 'score': 550.2}, {'connected_gene': 'EDN3', 'score': 0.14}]
chr20	GH20I059207	59207826	59208015	0.54	[{'connected_gene': 'ZNF831', 'score': 0.18}, {'connected_gene': 'EDN3', 'score': 0.16}]
chr20	GH20I059175	59175049	59175434	0.44	[{'connected_gene': 'ZNF831', 'score': 4.02}, {'connected_gene': 'EDN3', 'score': 0.13}]
chr20	GH20I059181	59181844	59183510	0.46	[{'connected_gene': 'ZNF831', 'score': 0.22}, {'connected_gene': 'EDN3', 'score': 0.13}]
chr20	GH20I059157	59157131	59157990	0.56	[{'connected_gene': 'ZNF831', 'score': 0.29}, {'connected_gene': 'EDN3', 'score': 0.11}]
chr20	GH20I059232	59232120	59232518	0.33	[{'connected_gene': 'ZNF831', 'score': 2.2}, {'connected_gene': 'EDN3', 'score': 0.2}]
chr20	GH20I059139	59139083	59140663	0.65	[{'connected_gene': 'ZNF831', 'score': 0.37}, {'connected_gene': 'EDN3', 'score': 0.1}]
chr20	GH20I059170	59170446	59170595	0.74	[{'connected_gene': 'ZNF831', 'score': 11.93}, {'connected_gene': 'EDN3', 'score': 0.13}]
chr20	GH20I059185	59185180	59185333	0.56	[{'connected_gene': 'ZNF831', 'score': 1.71}, {'connected_gene': 'EDN3', 'score': 0.13}]
chr20	GH20I059145	59145715	59151501	1.34	[{'connected_gene': 'ZNF831', 'score': 15.52}, {'connected_gene': 'PHACTR3', 'score': 1.42}, {'connected_gene': 'STX16', 'score': 1.42}, {'connected_gene': 'EDN3', 'score': 0.1}]